Array 1 206025-206894 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAACNP010000008.1 Escherichia marmotae strain 1374a 8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 206025 28 100.0 32 ............................ GTTAGGCGCGGAAATGATGAAAATGATTAATG 206085 28 100.0 32 ............................ GTAATGATTAAGCCAGCCTGAAGCGCATTGTG 206145 28 100.0 32 ............................ TCGCAAATCCACCACAGCACCGGGCGCAATTC 206205 28 100.0 32 ............................ GCTCATACGCGGAATTAGCAAATGCAATCGAT 206265 28 100.0 32 ............................ GGCGGGAGTTGTTATTTCTCCAAATCGAGAGG 206325 28 100.0 32 ............................ GCTATCTCTGGCGTGAGTTGCTACGACGAAAC 206385 28 100.0 32 ............................ CCGAGGAAATGGAACCCCATAGATTAGTTAAT 206445 28 100.0 32 ............................ AACTCAGCCGCGTACTCGCGACGGGCCGTGTT 206505 28 100.0 32 ............................ ATTACTTCCCGCCAGCGTTGCTCTGGCATGTT 206565 28 100.0 33 ............................ TTTCGATATGCCAGGCGAACAAGTTGCAAACAT 206626 28 100.0 32 ............................ TCGCACAGTTCTGATATTGGTGAAGGCATCGA 206686 28 100.0 32 ............................ CGTAGGGACGCCGTAACCGCCGATTACATAGT 206746 28 100.0 32 ............................ AAAAGTGAAACGCAATTAATTGAGCGCGACAC 206806 28 100.0 32 ............................ GCACTTATGGCGAGTAACAAAGGTTGAAATGT 206866 28 92.9 0 ....................T...C... | C [206889] ========== ====== ====== ====== ============================ ================================= ================== 15 28 99.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GAGTTGCAGGTTCAACTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCACGTAACTGGCTGGCTGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCTCGCGTCATCCAGGACAACCTGAAGAAACCGCTCGCTAACGAACTGCTGTTTGGCTCGCTGGTGGATGGCGGTCAGGTCACTGTTGCGCTGGATAAAGAGAAAAATGAGCTGACCTACGGGTTCCAGAGTGCGCAAAAGCACAAAGCGGAAGCAGCGCATTAATCTGGGGTCGTGAAGCCTTTTAAGTAGGTTGATAAAGTCCGTAATCTCGTAAGAGGTTACGGATTTTTTTGTTTGTGAGGTGGGGCGGTAAAAACCCTATTTTTGAGGGCGAAGGTAAGTTATTGATAATTAATGCTGCTGGAAGGCAAGGATAAAAAAGGGGCTGGACAAGGAATTTTGCTGGTTTCGCTTTATTAACAATGGGCTAAGCGTGTAGTATTTGA # Right flank : ATACGATGATGGCAGAAATTTAGCTGCGTTATGGCGCTCTCAACTCCGAACCATTAGCTGTGACACACAATAACAATTGTGATAATTGCGACGAGAATCAATTTCTCACACAGAAATCAATGCTGTACTAATCCTAACTCCTTCAAATAAAAATAATCACAGGATGTGTTTATGTCTTCAAATTACCTTACTCCTTCTGATCTCAAAACCATTCTCCACTCCAGGCGTGCCAATATTTATTATCTGGAAAAATGCCGGGTGCAGGTGAATGGTGGGCGAGTGGAGTATGTCACCAGTGAAGGCAAGGAGTCGTATTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGTTGGGGATGGGAACGTCCGTTACCCAGGCGGCGATGCGTGAATTTGCCCATGCTGGAGTGATGGTGGGTTTTTGTGGTACGGATGGCACGCCGCTGTATTCGGCAAATGAAGTTGATGTTGATGTCTCCTGGCTCAGTCCGCAAAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 221135-222002 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAACNP010000008.1 Escherichia marmotae strain 1374a 8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 221135 28 100.0 32 ............................ TTTCAGCAAATGGCTGGGGAACTATTACGGTA 221195 28 100.0 32 ............................ TAGTCCGCCGACATTATCCGGGATAATACCTG 221255 28 100.0 32 ............................ GCTGGCACATTCAACGACACGCAACTAACCGA 221315 28 100.0 32 ............................ GTAAAATTCCACCCTGACAAAAATCCGTTAGG 221375 28 100.0 32 ............................ GGCAAAGTTAAAGATTTTAACGACTACACCGT 221435 28 100.0 32 ............................ GTTCCTGTCGGGCTGAAACCATATTCCGGCTC 221495 28 100.0 32 ............................ TGGCTGGCTGTACGCACACGACGTATACAGAG 221555 28 100.0 32 ............................ TGCTCGATGTGGCGCGTGACGTATCCGGCGAT 221615 28 100.0 32 ............................ GCCCAGTTAAATCTGCCATCTGCGCGGATCAT 221675 28 100.0 32 ............................ AGCGAAACCTGGTGGCCGGAAGAAGCCGATCA 221735 28 100.0 32 ............................ GATCGAGCAGCGCAATATGCTGGCGGCGTTTC 221795 28 100.0 32 ............................ GTCGAGCTGATCGACTTATGCCCCATCAGGCT 221855 28 96.4 32 ...........T................ AAAGCTTGATGACATTTTAGAAAATTCAAAAG 221915 28 96.4 32 ...........T................ ATGTACGAGGTTCGTGACGCGAGTGGCGTTTT 221975 28 82.1 0 ...........T...A....T..TT... | ========== ====== ====== ====== ============================ ================================ ================== 15 28 98.3 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TACGTGTTTTTTATTCATGGCGGATCAATGCAAAAAAAGCCCGTACTTTCGCACGAGCTCTTCTTAAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTTTTACTGCCTTACCACATGGGGGGCAACGGGGCGCTACTATAGGGAGTTGGAGCAAAACGGTCAAGAAGAATTTATTTAGATTGATTTGTTTGGTTACGCAATGAACACACGATTCATTCGCCCGAGATTATGGTCGTATGCGTTCTGATCAATTGTTTATCAAAAGCTACGAGGGAAATATGAGAGTGAAGAAATACCAATCGACCCATTTTTTTAGAGTGACATGTAACTCATTGATTTTGTTTATTACTATTTTGACATCTCGAAAAAGGGTATGAACCTGTGATTTTGTGATTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTTCA # Right flank : AATCCACACCCCAATATTTATTTTCTTCCTTAATCCCGGGCGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCGTCAGGCGGCAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTGTTAGGTAACGTTTCAAGAACAGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTTGGCACATAACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAACGGTGAGATAA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //