Array 1 89546-87404 **** Predicted by CRISPRDetect 2.4 *** >NZ_QWMK01000007.1 Haemophilus influenzae strain 60295_BAL_Hi1 60295_BAL_Hi1_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 89545 37 100.0 33 ..................................... CAACTTCTTCGGCAACATTGTCGAAGCGGTTCC 89475 37 100.0 31 ..................................... GTTTTCTATTTATCAACTTTTAAAAATAACG 89407 37 100.0 33 ..................................... AGTGCAATAGCCACTATTGAACACTTTAAAAAA 89337 37 100.0 34 ..................................... TTTTCGCCATAGCCAAAGTATCGCTATTGATTGT 89266 37 100.0 31 ..................................... GAATCCAATACATTAACCGTTGCTGAGAATG 89198 37 100.0 35 ..................................... TGTTTTCCTCTTTCTGTTTAACTGTTACTTATTAT 89126 37 100.0 34 ..................................... TCCTTTATCGCTAAAATCACACTGTAAAAAGCTG 89055 37 100.0 33 ..................................... TCATTATCGCCCACACTTGCCAGTTTCGTGGGT 88985 37 100.0 34 ..................................... GCTTCAACAATTGTAAGCTCTACGCTTGCCTTGT 88914 37 100.0 35 ..................................... ATTGAAAAAGTAGCTAAAGTTAGATTTTATCAATG 88842 37 100.0 30 ..................................... GTACTAGAATGAATATTAAAGCTAAAATTT 88775 37 100.0 32 ..................................... ATAGCTATTGCGTAATAGTAGCCAGTATCTAC 88706 37 100.0 34 ..................................... CGTTTTACTGTTGGTTCAACTGAATCCATAATTG 88635 37 100.0 34 ..................................... ATGTTTTGAATAGTACAGTAACCAGTATCAAAAA 88564 37 100.0 33 ..................................... CTGCAATGAAGTCATCTTGTTGTGGTTTACTTA 88494 37 100.0 31 ..................................... CCATTTAAGCAATTCATAAACTACTAAGCCT 88426 37 100.0 32 ..................................... ACTGTAATGGTTGCGGAGAATGCTGAAGAGAT 88357 37 100.0 32 ..................................... TTTTTTACTTCCATTTCCACAAAATCATTTAA 88288 37 100.0 33 ..................................... GAATGGTTGGTTCAATTGAATCCATCACAGTAA 88218 37 100.0 34 ..................................... TGTAACTAATTCCTCAACTGGACAATAAGCTGTG 88147 37 100.0 33 ..................................... TAAAATAAGTTGTTTAATAGACATAATGTTTTC 88077 37 100.0 35 ..................................... GAATTAACCCCTTATTTATTATTTATATCTGTTAC 88005 37 100.0 33 ..................................... CTCAACACTTTAGCAAGATTTACAATTTCATTT 87935 37 100.0 33 ..................................... TTTCCAAATTTAACATTACGTGCCATAATGTAA 87865 37 100.0 34 ..................................... CAATTGCTTGTTGAATTGTATCAGTTAAGTTACT 87794 37 100.0 35 ..................................... CTTCAAGTTTACCCAGTTCCTCAAATCCTCCAATG 87722 37 100.0 32 ..................................... ATTCATAATCAATACCCTTAACAGTTCGCCAT 87653 37 100.0 35 ..................................... AGAAAATGTAGATGACAATGCGTCACCAAATTTAA 87581 37 100.0 35 ..................................... AAACTTTAAGCCGTTATATTTTGCAAGCTCACATT 87509 37 100.0 32 ..................................... TTTTTTACTTCCATTTCCACAAAATCATTTAA 87440 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =================================== ================== 31 37 100.0 33 GTCGAAAGACATTGCCCTGTTCCAAAGGGATTGAGAC # Left flank : TAAATTCTAGGAAGAAAAAAATGGCACAATATTTAATTGGTTACGATATTTCCGATCCTAAACGACTACAACGGATTTATCGTCGAATGACAAATTATGCGACCCCCATTCAATATAGTGTATTTATTTTGGATGGCACAGAAAAACTACTTAAGCAATGTTTAGCAGAGATTATGTTAATTTTCCACAAAAAGGAAGATGATTTGCGCGTCTATCCCTTACCAGCCAATGCGGCTCAATGGCGACTAGGTAAATCAAGTTTACCTGATGGGATTTACTGGACGGCCTTGCCTACAGCCTTAACCTTATAAAATGCTACTGGAGTATTTCACAAACTTTGCTAAAATATACCGCACTTTTGGCTGAGTTTTGAAAAAAATAAGAATGATAAAAATTGTTCAATATTTAATCAAATCAATACCCAACTATTCAAACATCAGAAAAAGTTGGGAAGTGGCTCTGGGAAGCCTTGCCACACAAGGCTCTAACACCCCACTGCA # Right flank : AGCTCTAATTTTGCGAGTTCTTCAAATCCCCCAAGTCGAAAGACATCGCCTGCCTAAAAGGGATGTACATCGCTAAAGTGCGGTTAGTTTTCAATATAAATTGGAAATCGACCGCACTTTTTATTTCCTTTCATTTTTACAAATTTGTATTTTCGCCTTTCTATTTATGACTTTTCTATAATTCACTCCGTCAGTAATTGATTTTTAGCTCAGAGGATTGAGCGCTAATTTAGTTTGTTAAAAATCTATAAAGAGAAAATAGAGAATTAAGCAATTATTGGCATATAAAACAATTGTTCTAACTTAAAAATGTGAGGGAATTAAAATGGCTGGAATTAATAAAGTAATTATTATTGGTAATTTAGGGAATGCACCAGAAATTCGAGCGATGCAAAATGGTGATACGGTTGCTAATTTTAGTGTGGCGACATCTGAAAGCTGGGTGGATAAAAATACACAGGAAAAACGTGAAAATACCGAATGGCATCGTATTGTGCTTT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAAGACATTGCCCTGTTCCAAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.30,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 228-403 **** Predicted by CRISPRDetect 2.4 *** >NZ_QWMK01000009.1 Haemophilus influenzae strain 60295_BAL_Hi1 60295_BAL_Hi1_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ========================================= ================== 228 32 100.0 39 ................................ AGCAATGAGCTGTCAATTGAAGTTTAGCAGTGGGGTCTC 299 32 100.0 41 ................................ GTTAAGTTTGGAGATGCTATATCTTCAACGTTTTACGTCTC 372 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ========================================= ================== 3 32 100.0 40 AATCCCTTTGGAACAGGGCAATGTCTTTCGAC # Left flank : TGCCACTACTTGCCCGCCAAATACTTGGCGAAAACCTAAATCTTGGCTTTCACTACGAAAGATTAAATCATCAATTTTTTCAAGTTTAAGAAGATGAATGAGGTTATTGAGAATATCTGACATATTGCTTTCCTAGAAGATAAGAAAAAGTGCGGTTATTTTAGCGGAGATTTTTAGGAATGCCAAAGCCAGCAATAATTTTAAGATAGAAGTAAAAACTTAATTTTA # Right flank : CAGCAGTGGGGTGTTAGAGCCTTGTGTGGCAAGGCTTCCCAGAGCCACTTTCCAACTTTTTCTGATATCTGAAGAGTTAGGTATTGATTTGGTTAAATATTGAACAACCTTTATCATTCTTATTTTTTCAAAACTCAGTCAAAAGTGCGGCGTATTTTAACAGAGTTTTTTTAATACACCAGTAGTATTTCTATAATGTTAATACATTATGACACAATAGCGGTTTTCGGCACCGCATGCCGCCAAAGTTTAATCTTTGGATGCGTTTTCTACTGCTCTTGCGATGGCTGTAGCAATCGCGACAACAAGTAAGCGTTCAAACATATTCTTCTTCCCGTTTTGTTGGCTAGCTAATATTGATGTAGCAAGTTCACAGCACTTGCCAAGCTGAGAGGCGCTAATCCTCCATGAGGCGGTCAACCACCTCTGTTACAACAGCTGCGACGATTAATTCTGCTACAGGTAACCACATAATTTTTCTCCTATCATCTACATTAATT # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCTTTGGAACAGGGCAATGTCTTTCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.40,-0.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA //