Array 1 35672-37139 **** Predicted by CRISPRDetect 2.4 *** >NZ_NCLA01000037.1 Yersinia pseudotuberculosis strain M89 NODE_37, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 35672 28 100.0 32 ............................ AGAATGATGAGCAGTAACGCCGGTAGATAGGT 35732 28 100.0 32 ............................ AAGTTCGGGAAGAATGGTGACTTCTTCCAACT 35792 28 100.0 32 ............................ CATCGTCAACGCGATCGACGGTCGCACGAAAA 35852 28 100.0 32 ............................ AGATAGAGCTAGTGGAACAAGGAGGGTGGTTA 35912 28 100.0 32 ............................ TAAAAACACCGTTGTAAATAATACTTTTAGTG 35972 28 100.0 32 ............................ ACCCCAAGTACCACCAATAGACTCCCAATATT 36032 28 100.0 32 ............................ TGTCTCAAGAGACGAGGAAGTAAATATGCGTA 36092 28 100.0 32 ............................ GTTAAAGATGCGCTAACGGCTATGATTCAAGT 36152 28 100.0 32 ............................ AGCGTGCACGGCCTTGCGAGTATGGCTTGAAG 36212 28 100.0 32 ............................ GGTAACCAGCCATTCATCGCAGAGAACTTTTG 36272 28 100.0 32 ............................ CATCTGATATGGATATAATGGCGTTAGATAAT 36332 28 100.0 32 ............................ TCAATGTAATCAAATAATGGTGTGGCTGTTTT 36392 28 100.0 32 ............................ TGGTATCAAAAGCAGGTTGAGAATCTCGACAC 36452 28 100.0 32 ............................ AATTGTGAAGCGACTCAGGAAGAGATTGACTA 36512 28 100.0 32 ............................ GTCGCCGTTTAGTTGATGGGAAAAATAGTGCT 36572 28 100.0 32 ............................ TGAGCGCGCCCCACTGCGCGGCGTTGAGCGTA 36632 28 100.0 32 ............................ ATAGCGTAATACCATCGTCGGGTTAATATGCT 36692 28 100.0 32 ............................ TTGCTCCATCAATTTGCGAGCCACCTGTGATC 36752 28 100.0 32 ............................ TAAATCTGAATCATGAAATTCTATCTCAGATA 36812 28 100.0 32 ............................ GGGAACTGAACTGATTTTGAAATATCCCTTGC 36872 28 100.0 32 ............................ CTTGGAATACAGATTATTGCTGGTACTGTCAA 36932 28 100.0 32 ............................ TCCACGTTCTCTGGATCAACACGATAACTTGT 36992 28 100.0 32 ............................ CTGACCACAAAAAACGGTTAAACAGCACTACG 37052 28 100.0 32 ............................ GTCAACGCTTCACTCCTTGCGCGGGGTATAAC 37112 27 89.3 0 .....................CC.-... | T [37138] ========== ====== ====== ====== ============================ ================================ ================== 25 28 99.6 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TATAAGGCAAGCTCACGCTCATCATTAAGTTTATCAATCCGGCACAGTCTCTGTTGCCGGATTTTTTGTATTCAGAAAACCAGGTCAGAGCGTATTGCCGTGCGGCTACAATCTCAATCGTGATTAGGCTAGAAAAATGAATCGAGGTGATGAACTCCAGCAGGCAGACCCTCAACTCGTCGTGGGAAAATACCGGATAGCGGATAATGCCGCCCCTAATTCGCAATAGACGATACCGAGTAACCGTACCCATTAGCCATAGTATTACTTTTTTAGTTATTTAATTTGGCAGGCCAGAAACATGGGCCACGCCACCACCACCCTCCTCAGAAGAGTAATCATTAGGGTTACGTCCCCCCCGATTCTTGTGACCCTCTTTTTTTCACTATGACTAACGTATTGATTTTTATGCTACTCAGGTATTTCACTAAAAAAAGGGTTTTTACGCATTTTGCGCCATTGCTCATTGATAAACATCGGGTTATCCGTATTATCTTACT # Right flank : ATCTCAGCTCTCTGGCGGCGCTTTATCTGCAAATATTAACTCACTAATCCCTTGGCATATTCAAACAACGCTTTTAGCAGCGCAAGTTTCTCTTTATCGTCTTCATACTGGTTATAAAATTGTTCCAGTTGCAAAACATAATCTTGTACCCGCTCAGGGCTAAGCGCTTCACGGCGATGCTGTAACCAACGCTGTTGTTCACTGTTATTCAAGGTATTTGGGTAGTTACGGGCGCGGAAGCGGAATAGCAGGGCCTCCAACCGTGGGTCCTGAAATGTCAAATCCAGTGCTGGCAGATTTTGTGGCTCAGTTTGCTGGATAATCTTCATGGTGGCGCGGTCAGCATCACTGAAAAAGCCGTTATACAACTGTGTATCCACATCATCGGTAACCGCGAATGGCTCAGCTTGTGCAAACAGCGCGACCACTTTTTCACGCACCTGCGGGTTTTGCCGCAGCAGTTGCAGATTTTGCAAACAACGCTGGCGATCAATCCCCAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 58081-58229 **** Predicted by CRISPRDetect 2.4 *** >NZ_NCLA01000001.1 Yersinia pseudotuberculosis strain M89 NODE_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 58081 28 100.0 33 ............................ ACTTTCGGAGACAGTGATTCTACGACCGATGCA 58142 28 100.0 32 ............................ AAGCCAACGACGGATCTCTTCAACGGCAATGC 58202 28 89.3 0 ...........T............T.G. | ========== ====== ====== ====== ============================ ================================= ================== 3 28 96.4 33 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATCCTTTAAACACCAGACAGCACAACAACCCAAGAGGTTAGTTACTGTCCGCGGACGGATAAGTCACAGTTTCCCCATTCAGGTTATATTTTATCAGGGATAATAGGTGAAATAGGGGGGAGGGGCTAATGGTAAAAAGCCTCTTATTGATCCAATATATAATAATTCAGATAAAACGCGCATCTATTAGGATATTTCAGACATTGGCGTGGGAATTTTCTGATATTTATCATAGGAATCCCATTAGAGTACGCCAATATTCTTTTTTTAATGTACCTAATAACCTCATTTAGTGAATAACCCAATTGACCTGAACCCTAAAAACGAAGCTATGGCAGAGTCATGCCCTGAGAGCGTTTCAGGGCGTTAGTACAGCAGATGATAAAGATCACAATAATAACTCATGGGGATTCTTAGCCTATTCACATCAGGGGCGTCATTTTTTACCCTTTGGCGAAAGAGTTATTTTATAAACAGTTTGTTACCCGTATTATCTTACT # Right flank : AGGGTTACTGTCTGTGCGCCAGCGCGGCCCCAGCCTGATCCTCCTGCTGGTAGGCCAACGCCACGACCAGCGACTGCACTAGACAGAGCGTGGCTGATTGAGATCGGAAGGCATCTACCTGAGCCTCTTTCACCACAAAACAGAGATCGCTGAACGTGGCGAGCGGGCTTATCTGGCTGTCGGTAATGACAATCTGCCGGGCACCCGCGCTAGCGGCTATTTCACTGACCATCACGGTCTCTTCGGCGTAAGGAGAGAAACTGATAGAAACCACGATATCGCGTGCTTTAATGCTGTTCACCTGCTCGCGCAACATCCCCCCGAGGCCATGAAGTTGCACTGGGCGACATTCTAAATGGCTGAGTGCGTAGGTCAGATAGGCGGCCACGCTGAACGAGCGGCGCAGGCCCACCACATAAATGGTATCGGCCTGAGCAAGCAGTTCCACCGCGCGTTGCAGCATCTCTGGTTCAGTACGTGCCGCCAACTGCTGTAGTGCC # Questionable array : NO Score: 5.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1349-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_NCLA01000072.1 Yersinia pseudotuberculosis strain M89 NODE_72, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1348 28 100.0 32 ............................ ACTGCTAGCCCATAGAGGGGTGGGTGGTAATT 1288 28 100.0 32 ............................ CCACAGTTCAAGCCATCCATTGACCCAATCAT 1228 28 100.0 32 ............................ AGCGACAACGAAGGGCATGATGATGGCTTTGA 1168 28 100.0 32 ............................ AGCTCAGCAATGCTGAAAGGCCCGATTGATAT 1108 28 100.0 32 ............................ ATAATCGTATCATCATTTTCAATTAATTTGTC 1048 28 100.0 32 ............................ CTTGGAATACAGATTATTGCTGGTACTGTCAA 988 28 100.0 32 ............................ AAAAAATCTGGGATATTAAACGCTGTTGCACA 928 28 100.0 32 ............................ CATTCAAAAGCGAGCAACAGGCCAATGCAATA 868 28 100.0 32 ............................ ATCGGCTGGGATGTTACTCAGGAAGCGCAGAT 808 28 100.0 32 ............................ TCCCGTCTATCGCCGCGCTTAACCGCCACCAG 748 28 100.0 32 ............................ ATAGGCATAAACTTCATCATCGAACTGTAAAA 688 28 100.0 32 ............................ ATCACACATAATAAAATCATTTTTAACGTACA 628 28 100.0 32 ............................ TATAAGTTGTGTCTTTTAAACGCTTTGAACGC 568 28 100.0 32 ............................ GCACCTACGCGGTCTGGTAAAGGTGTTAGTGT 508 28 100.0 32 ............................ TGTTGAAATACATGTTCAAGGAAATGGTTTAG 448 28 100.0 32 ............................ CGCCAGGCAGAATGCTCTCCGGTTCCTCACTA 388 28 100.0 32 ............................ TGCGGGGGTGTCGGTGCTGCCGCCTGTGGTAA 328 28 100.0 32 ............................ TATAAGTTGTGTCTTTTAAACGCTTTGAACGC 268 28 100.0 32 ............................ GCACCTACGCGGTCTGGTAAAGGTGTTAGTGT 208 28 100.0 32 ............................ TGTTGAAATACATGTTCAAGGAAATGGTTTAG 148 28 100.0 32 ............................ CGCCAGGCAGAATGCTCTCCGGTTCCTCACTA 88 28 100.0 32 ............................ TGCGGGGGTGTCGGTGCTGCCGCCTGTGGTAA 28 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 23 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATTGCTGCCCACGGCGCTGGAGGGCGGCCAGAACTACACGGTGTAGCACCAGATGGATCATCACAGAAATCAATAATATTAGCCCAATCACCATCGTCAATGACATCACATTGGAGAACTCCATCCCCAATCTTTCCAGCCACTGGCTTATTCTTTGTTGCATCACTGCTCCTATAAAGCATCAATCTGACTAAAAGGCCTTAGCCTAAAGGCTATAGGCGCAGGGGGTGCACCTGTTTACCCTTTTTTACATTGTGGTTCTGTATCTTTGTTCGATTGTTGCCCCGCGAGGGGGGAGACATCTTTATAGGCTGTGGTTTATGACATGGTTTGTGGAATTGTACTGTGGTTTTATTATGAGTTATGTTCTGACCCTATTTTTTTAGCTACTGCTAACTCATTGATTTTACATTGTGGTTATCGGTGGTCTAAAAAAAGGGTTTTTTCCCCATTAGCGAAATAAGTATTTTACAAACAGGATGTTATCGTATTATCTTACT # Right flank : A # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 14604-13376 **** Predicted by CRISPRDetect 2.4 *** >NZ_NCLA01000082.1 Yersinia pseudotuberculosis strain M89 NODE_82, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 14603 28 100.0 32 ............................ TGCGGGGGTGTCGGTGCTGCCGCCTGTGGTAA 14543 28 100.0 32 ............................ CGTTAGTTACCGCACGACCGGCGGTCGCAGTG 14483 28 100.0 32 ............................ TAACTTGAACTCTTCGAAATACATTCGACCTT 14423 28 100.0 32 ............................ ACCTGCAAATTCTTTAGCTTCAATAACATCTA 14363 28 100.0 32 ............................ AATATATTTACGGTGGAGGTGTTGCTGAAAAT 14303 28 100.0 32 ............................ TACCAAAGCCGGAGAATGTGGCTGTGCCACAA 14243 28 100.0 32 ............................ TCATATCCCTCAGAATCAAAAGGTAGAAATGA 14183 28 100.0 32 ............................ GCTGGAACCCACTGACTTACATTGATCGTAAC 14123 28 100.0 32 ............................ ACTCAGCCACACCAACATACTTAAGCCCAAAA 14063 28 100.0 32 ............................ ATGCCGCAACGCCACACTCAAGCTGCTCGCGC 14003 28 100.0 32 ............................ TTGAGCGGCTCAACGCCAGCATCAAGCAAGTT 13943 28 100.0 32 ............................ ATATAGAGAGTTTAAAAACAGTTTACCTAACG 13883 28 100.0 32 ............................ CAGGCGGGGCGGCCCGATACTGACCCGAGAAT 13823 28 100.0 32 ............................ ACCCCCCCATTTCTTGAAGTGCTGATAGTGGC 13763 28 100.0 32 ............................ TTCCATTCAACCGTAACGCCCTTTATATTAAC 13703 28 100.0 32 ............................ AACATCACATGCCGCAAAATATTCATGCGCTG 13643 28 100.0 32 ............................ TTGCGGTAATCGCTCCACGATGGGATTTTGAA 13583 28 100.0 32 ............................ AGACACGCTAATGACTTCTATTACTTTATTTT 13523 28 100.0 32 ............................ CAGCAAGGAACATCGTCAGAAAAAACACTCTA 13463 28 100.0 32 ............................ GTTACGTGGCAAGTATCCGACCCGACGCTGGG 13403 27 85.7 0 ...................A-.A.T... | C [13379] ========== ====== ====== ====== ============================ ================================ ================== 21 28 99.3 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TTAGAAACGCCAGGCAGAATGCTCTCCGGTTCCTCACT # Right flank : TTCTGGACCATGCGTTGATGCTATTTGGGGAGCAAAATTGCGAGCGGAAGCGCATTTTGTAACTGACAACAGGGAGAATGGCATCTTTTATTACTGACTTTATGAGTATTAGAGTAGGGTAAATAGCAGGTAGCATATCAAGATATACCCGTCATACTTCAAACTGCATGTATGTTGGCTGCGCTCAATTATCCCGGTCACTTACTGGTGTAAGTGCTTGGGGATTTACTCAGTTGCTGGCTTCCTGCAACTCGAATTACTTTGGGTATAGAGAGAGTTATTTTTTGGAAGAATATCTGCTAATAAAGCGCTAACGGAAAAATAGCGCGGTGGATATCCCGCTAAGGAGTTTTTTGGCTATGGAAAACGCTATTCATTCCTCTGATTTGAAAACGATCCTGCATTCAAAACGATCCAATATTTACTATTTAGAATATTGCCGCGTATTGGTTAATGGTGGGCGAGTTGAATATGTCACCGATGAAGGTAAACAATCCCTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //