Array 1 410-926 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASC01000219.1 Gilliamella apicola strain N-28 NODE_219, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 410 29 100.0 32 ............................. CGCTGAACGCGGCATCCAAAACTATAAAATGT 471 29 100.0 32 ............................. ACGCGGGTATGTGAATATATCGGTATCGATGG 532 29 100.0 32 ............................. TCGTTTGGATGAATTAGAAAGTAAATTAAGAA 593 29 100.0 32 ............................. TTAGCCGGCTTCAAACTCATTGACCCATTTAT 654 29 100.0 32 ............................. GCGGTAATGCTACTGGCTATTTAGTTAACGGA 715 29 100.0 32 ............................. CAATCGATTATTGCCTGCGTTCGCTAGGTGAA 776 29 100.0 32 ............................. TTTTACATTATAACGGTGTTATCTTGCGAGGG 837 29 100.0 32 ............................. GGTTTCGCGCACATCATCCCTGAGGTCATCAA 898 29 96.6 0 ...........................T. | ========== ====== ====== ====== ============================= ================================ ================== 9 29 99.6 32 ATGTTCCCTGTATACACAGGGATAAACCG # Left flank : GAGTAATAGATTCGAAATAACCGAGTTTACATAATGGTTTTTACTTAAAAAATATATTGGTGTATTCAAAGATCGTTGAAATGATATTAACTATAAACGAGTATATGAATCATAGATTATGAAAATTTGGTAACTAAGATATACAAACAAACCACTTTAAAAATAGAGTAATTTTGATAATAACAAACCACTAATAACATCTCAATAAAATCTACTATTTTTTAACTAAATGAAAAATATAAACTTATCGGTAGAATTCCGTAGAATCAAATTTTAATTTCCATCAATTTTAATTACTTAAATAAAAACATAACGTTATAAATACTGATTTTGATAAAAAATAACCTAAAAAATCGGTAGAAATTTTGTAGTCAATATTTTAATTATAAAACAGTATGTTATAATTGGTA # Right flank : GCGTTAAGCCTTAATGTTGCGGAATATGCTAATCATAAAACATTAAAAAATATTATAAATCAAATGGAATATTTACATTGGCATCCCGTACCAACACCTAGATGTGTTTATGCTCATGAGATGGGACACGCATTACATCATCAACACCAGGAAGAAATTGATAATATCATTAAGAAATTGTGGGGACGAGGTTGGGCACATGCAATTAGTAATTATGCTCTACATAACAAACGAGAATTTGTCGCTGAGGCGTTTTCATTGTATATTGAAAATCGCATAGAAGCTAAAAAAAGACTACATGCAGAACTATTTAAATTTTTCGAATCGTTAGATAAGGGTATTAAATGAATAAATTTGATTTATTAGTTGAACAAGCAACTAAATTGATTAACACCGAACCGCTTCCTGACGATGCAGAGGAGCAATTACAACGAATTATTGACCAAGCAGAAAGTAAGCCTGAAAGGTTTATGTTAGCCACTTTTGCTGAGGCTTTGTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCTGTATACACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: F [matched GTGTTCCCTATACACATAGGGATAAACCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 9050-8350 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASC01000030.1 Gilliamella apicola strain N-28 NODE_30, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9049 29 100.0 32 ............................. GCGCCGAAAGAGGCGCCCGATAATCTCAAATC 8988 29 100.0 32 ............................. CACAGGTATATAATGGTATTGTTATTTCCTAT 8927 29 100.0 32 ............................. CGCTTGAAAAATCGGATTATAACTAGACCAAT 8866 29 100.0 32 ............................. ACGACTGGTGGCATAACGGGCAAAACCTATAT 8805 29 100.0 32 ............................. CATTCGCAATACCACCAAGTGTCTTTTAAACT 8744 29 96.6 32 ..............T.............. CGGAGGAGGAGGCGAAAATTGAGGCTCAACGC 8683 29 100.0 32 ............................. CATTATTATCTAATTCAATTTCTTTAGTGTTC 8622 29 100.0 32 ............................. GGTGTTCACTGACAACTACTGATTCATCAGGT 8561 29 100.0 32 ............................. CTATTCTCTGGTTCAATAGTTATATCAAGCCC 8500 29 100.0 32 ............................. ACTGGGTAAAATCAGCTAGAAATAAAGCTAAT 8439 29 100.0 32 ............................. CATAATGTCGTCCACTCCTAACGTTGTTACTG 8378 29 82.8 0 .......................TTTT.T | ========== ====== ====== ====== ============================= ================================ ================== 12 29 98.3 32 ATGTTCCCTGTATACACAGGGATAAACCG # Left flank : TATCATTTTTAAGCTAAATTAAAATTATTAAAATAATCAATATAGTTATTGTTAGTACCGATTCGTTAATATCAGCTTAATAACATTAATTATGCTTTCAATAAAAATATTGGTTAAATCAAAATGATTTGATTGAAAAACAACCTAAAAAGTTGGTAAAAATTTTAATGCCACTATTTTAATTATAAAACAAACAGTTATAATTAGAGTGTTCCCTGTATACATAGAGATAAACCGTCGATGTATTAATATTGCATATTATTTTTTTGCTATTCAAAAATCGCAATTCTGTATTTCATTGTTTACCTTTTTTTAATTACATGAAAAATATAAACTTATCGGTAGAATTCCGTAGAATCTAATTTTAACTTCTATCAATTTTAATTAATCAAATAAAAACATAGTGTTATATATTATGATTTTAATGAAAAATATCCCAAAAAATCGGTAGAAATTTGACAGTCAAGATTTTAATTATAAAACAGTATGTTATAATTGGT # Right flank : TTTATGCAAAATTTTACTAATTTTTGTCAAAAAGTTTCAGATTATGCCTATGTTTCAGTATAAAAACATCGATAATTAATTTAGTTTAATGGTTAATTTTTATATAAACCAACGTATTATAAAAATGCATATCATTTAATGTGTTAAGGCATTACTATTGTAAAGACAATGGTTAAAGTAACGCTCTGTTAGTTCTTGATGTTCATTAGTTATCTTCGTACAATAAAAAAAATTTTTATTTTGGTTTGTTATGCAATTACATTTAGTGGTTAATACGTTTGGTTCTGATTTGCAGCGTCGTTATGGAGAAAAGATCTACAAACTGACGTTACATGGTGGATTTAGTTGTCCAAATCGTGATGGTACTCTTGGCGTTGGTGGTTGCACTTTTTGTAATGTTGCGTCAATTATTGATGAATCTATCCAAGTAAAATCTATTTCTGAACAGCTTGCAACCCAAGCACATCAAATGAAAAAATCTAAGCGTTATCTTGCCTACT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCTGTATACACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: R [matched GTGTTCCCTATACACATAGGGATAAACCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 665-394 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASC01000038.1 Gilliamella apicola strain N-28 NODE_38, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ==================================== ================== 664 26 100.0 36 .......................... CCGCTACAGGATTGGAAAGAACAGCAGATCGCAGCC 602 26 100.0 35 .......................... CCGCCACCGTATTATTAATGGCTTTATTAATGATT 541 26 100.0 35 .......................... CCGTGTTGCACCTGACCAACCAGCCAGCCCAGCAA 480 26 100.0 35 .......................... CCGTATTTGCATTTTTCGGATTCTGTTTTGAACAC 419 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== ==================================== ================== 5 26 100.0 36 GTGTTCCCTGTATACACAGGGATAAA # Left flank : GCTTATTGAAGAAGTTTTGTCCGCTGGTGGTATCGAACCGCCTCTACCACATGATGATGCCCAACCACCAGCTATCCCAGAACCTCAATCTTTAGCCGATAGTGGCTTTAGGAGTCGCTAATATGAGTATGTGTGTTGTGGTAACTGAAAATGTTCCACCTCGATTACGTGGTCGTTTAGCAATTTGGTTACTTGAAATTAGAGCCGGAGTTTATATCGGTGACATATCAAAACCAATAAGAGAAATGATATGGCAACAAATTGTTAAACTTGCAGAAGAAGGCAATGTAGTCCTTGCTTGGGCGACTAATACAGAATCAGGATTTGACTTCCAAACTTATGGCGCTAATAGAAGGGTTCCGGTAGATTTAGATGGACTAAGATTAGTCTCTTTTTTACCTATTTAAAATCAATAGGTTAACGTTCTTTAAAAAATTAAAAAAATTGGTATATTTTTTGGGTGTCAATAAATCTAAATAAAACAATTATATATATTTAGA # Right flank : ACCATATTCGTCATTTTGCAGGGCTTTCTGCAAATTGTGTAAGGATAAATCAGCTTTTACCTGATTTTTTATTTAACTGAAATCCTTTGTTGGATAAGTTATTGCTAATTTGCTCTAAGTCAGAATGTTCAGTTTTTTCTGAAACATTAAATAATTGAGCAAAATATTATACAGTTTTGTATCCATTTTGTTTTATTAGCGGTTTATCTAAAAAAGCTTGTCTTTCTGTTAGTATTGGATACCTTCTTGTTCAATAACAACACAATGATTTGATTATAATTAGTTAAAATAGTTTTTATATCACAAAGATCTTCAATAACTTGTTGCAATGATGGTATTGGAAAACACAATAAGGTGTAAAAGTAGATTTAATTTTTGTCTAATATCTTTATAC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3589-4166 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASC01000082.1 Gilliamella apicola strain N-28 NODE_82, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3589 29 100.0 32 ............................. ATCCCAAATATGTTAATTTGAAACAATTAGCT 3650 29 100.0 32 ............................. AAAACCCTAACCCGTTAATGTTGCGGGTTGGT 3711 29 100.0 32 ............................. ACTAACCGCGTTACTACCTCCACGCAGATTAA 3772 29 100.0 32 ............................. CCGCAGACACTAAAAACTTCTTAACCGAATCA 3833 29 100.0 32 ............................. GGGTGGCACCAAATCGCCAAAGAGTGGAACGG 3894 29 96.6 32 ............C................ AACTCAAGGATAGCGCGCCTCAATTTGCAGGG 3955 29 96.6 32 ............C................ AATTCATCAAGAAACAGGAGCTAGAAAATGGC 4016 29 96.6 32 ............C................ GTAATTCATTCTGATTTAAGCATGATAGCGGG 4077 29 100.0 32 ............................. CTCGGTGGTGTAGCCCAAATGCTGGCACGAAC 4138 29 89.7 0 ............C...T..........T. | ========== ====== ====== ====== ============================= ================================ ================== 10 29 98.0 32 ATGTTCCCTGTATACACAGGGATAAACCG # Left flank : GATATATGGTGGAGTTTATAACCTGTTTGACAAAGATGTCTCAAATGCTGACTTCGGTAAAACTCTAGAAGGTCGACGTTACTTCATAGGTACCGAGATTAACTTCTAAATTAACTAATAAGTATTTTCCTATAAAAAAGATGACTGTTCAAACAGCCATCTTTTTCTATTTATACTAATATAGATTATTTATAATCCAAAAATAGAAATACCTTTTTTCACCCATCGATAAAATAACTTAGTGCAATGCCAACATAGTAACTTTTTGCTATTTAATAAATCCTAATTATATATTTCAAGGTATTATTATTTTTAATCTAATGAAAAATAACAATTTATTGGTAGAATCCTATGAATATTAATTTTAACTACCGTTAATTTAAATTAAATCAATAAAAACATAGTGTTATAAATACTAATTTTATTACAAATTAACCCAAAAAATCGGTAGAAATTTGACGGCCAATATTTTAATTATAAAACAGTATGTTATAATTGGT # Right flank : GGATAGCGGTTTCTGAACAAAGTTTATTGTGTATAATGTTCTCGTTTACTACCGCATAGCTAGTTTAGAAAGGGTGAAAATGGAAAGGTTCATTTTAGGAACTTTAGGAGAAGATCTATTTGTTGTGCAACATGACAATTTAAGAAAAGTTCATGAATTGATTCAAAATAAGCCTTGGGCTGATGATATTTTGGAACAGATTCAAACATTGATAGATAAAGAATCAAGTGTACCAATTAGACGTATGATGTCAATGAGCATGAGTTCAGTAATAAATAAACTCGAAAATAATAAGTAGAGCTTAGTTGAGTAACAATATGCTACCCAACCAGTTAATTATTATTAAGAACTATTGAACATCAGTATCGCTTCTTCAATAATGTTCCTTGGACATACAGGGATATTCACTGCCGTGTAAAATATTAAAAATCCAGCAAATCAGGATTAATACCTAGCGCGTTAGCGATTTTAATTCGTGTTGTTTTTTTTAACGTTTGGCT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCTGTATACACAGGGATAAACCG # Alternate repeat : ATGTTCCCTGTACACACAGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: F [matched GTGTTCCCTATACACATAGGGATAAACCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 6659-5836 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASC01000130.1 Gilliamella apicola strain N-28 NODE_130, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 6658 29 100.0 32 ............................. CAATGCAAATTGGTATCGATGCTGACGGTGGT 6597 29 100.0 32 ............................. TATTTTTAATAAATAATAAAAAAAGGGGTAGG 6536 29 100.0 32 ............................. AGTTCGCTGATATTGATGTGGTTGAATCTCTT 6475 29 100.0 32 ............................. TATCGAGAGGTTAGCATGTCCTTTTATACTAA 6414 29 96.6 32 ............................T GGATAGGAATTGTCACAATTGCGTTAATGTCG 6353 29 100.0 32 ............................. AGTAGTGTGCTTTAAGTTTTCTAGTCTTGGCA 6292 29 100.0 32 ............................. AGTGCATTAGCGAACTAGCCGAAAAATTGGGT 6231 29 100.0 32 ............................. TTTGTGCTAATGTAGAATTTTTCTCCAGCTAG 6170 29 93.1 32 .T..........T................ AGAAAAAAGAGCGTACCGATTGGCATAGGATT 6109 29 93.1 32 .T..........T................ GTATTAATTACCGCTATACCCATGTTTTTAAC 6048 29 93.1 32 .T..........T................ CCTTTTTTAACATCACTCCGTTTCATTTTAAC 5987 29 93.1 32 .T..........T................ CAATCAAAACGCGAATTAGAAAATCAATCAAC 5926 29 96.6 33 .T........................... GACGGCGCAATCGAACCGTACCGATCACGAGGG 5864 29 79.3 0 .T.....................T.TTGA | ========== ====== ====== ====== ============================= ================================= ================== 14 29 96.1 32 ACGTTCCCTGTACACACAGGGATAAACCG # Left flank : GTATGTTATAATTGG # Right flank : TTAAGAAAATCATAAAAAGTCAATCTTGCTATCTACTGTCTACGTAGAGGAGTTTTTTTATTCTGCAAACTTATTTTTGTGATCATATCGATTGTAATGGATAGCATCGCTTATTAAGTAGTTGTAAATTTCATCTACAATTTCGATTCCATTTTTTAAGTAATTTGCTTCACGTTTTTTACCGCGTTCACCAGGAAAAAATACCTCAGTAATTCCTTTAGCAGGTTTAACCTTTTTTAGTTGATCCAGCATGGCGGACATGTTCTTTTTGAAAGTTTCAAGACCGATAAAATAATCGGGGTTGATAACAATATGCAAATGCCCAAGATCTCGTCCTTTGGATAAATCGGCATACATTGATGAGACGTTTTTACCAAATGGTACACCTAATAAAATGCCTGACAATATATCCACCATCATCATTAATCCAAAACCTTTTGCATCTGCTATAGGTAATAGAGCATTGACCTGGTGCGGATCAGTTGTTGGTTTCCCTTGTT # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACGTTCCCTGTACACACAGGGATAAACCG # Alternate repeat : GTTCCCTGTATACACAGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCTATACACATAGGGATAAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.80,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3252-2684 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASC01000178.1 Gilliamella apicola strain N-28 NODE_178, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3251 29 100.0 32 ............................. CTCCGATGAAATTCTCGCCATGATGGATGAGG 3190 29 100.0 32 ............................. TATTTTTAGCAACAAAACCCATTCCCACTCCT 3129 29 100.0 32 ............................. GGGGTCGTTTTGCTGTATCTATTATATTATGC 3068 29 100.0 32 ............................. TTACCTCGAAATTTGGCAGCTTTAATCCACCA 3007 29 100.0 32 ............................. GTCGAATCCGCCGAGCGAGATAGTGCCGCCGC 2946 29 100.0 32 ............................. GAGCATTTCATGACTAAATTTATAGAGCTAAC 2885 29 100.0 32 ............................. AGGTGGTTTATTTAAATATAACTCTCAGTATT 2824 29 100.0 32 ............................. CTAAAAACAGATAACTTAAATAAGGTATGGGA 2763 29 96.6 22 ............................A ATAGAGCTCAACATTATTATAA Deletion [2713] 2712 29 79.3 0 .A....A.......TG.......T....A | ========== ====== ====== ====== ============================= ================================ ================== 10 29 97.6 31 ATGTTCCCTGTATGCACAGGGATAAACCG # Left flank : ATATAAGCATTTACTTTTAAAATTAAGTAATAGATTTGCAATAACAGCCTTACATAATGGCTTTTACAAAAAAATATAGTTGATTACTTTAAGATTGCCGAAATGATATTAACTAAAAACGAGTATATAAATCATAGATTATGAAAAATTTTGTAACTAAGTTACACAAACAAATCACTCTAAAAATAGAGTAATTTTGATAACAATGAAGCACTAATAACATCTCAATAAAATCTACTATTTTTTTAACTAAATGAAAAATATAAACTTATCGGTAGAACTCCGTGGAATCTAATTTTAATTTCCATCAATTTTAATTACTTAAATAAAAACATAACGTTATAAATACTGATTTTGATAAAAAATAGCCTAAAAAATCGGTAGAAATTAAGCAGTCAATATTTTAATTATAAAACAGTATGTTATAATTGG # Right flank : TAAATTCACACAAACCGCCTAAATGGAGGTTTTTCATTGCCAAAATCCTTTAAATAACATACCATTTAAAAAAAATATAAAGATTAAGGATATGGTATGAAAAGAATTGCATTACTAGGATTGGTTTGCTTTGCGTTGTCTGGTTGTGGTGATGATAAGGTGACAAAAGAGTATCTTGTTGGCAAATGGGAGTGTAAATGGGACAGTTATAGGTCGACAATGAAAGATGGAAAATTTACTGATTATGTTAGCGATGAGTTTAATATAATAAGGAATGAAGAATTCAAAATAGAAAATAATAAGCTGTATAGTATAAGTAAAACTGAAATAGATGATGATTCAAATGGTTGGAAAGAAAGTGATATAATTGATACGCATACAGGTGAAATAATAGAGAAAACAGAAAATAATTCAACAGAAAAGACAATCCGATCTCTAATAAAAAAATCACATGATACTTATATAATGAGTAGCGAATATATTAAAACTCGAAACGAACA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCTGTATGCACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTGTTCCCCGTATGCACGGGGATAAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //