Array 1 75499-76116 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVDY01000012.1 Fusobacterium necrophorum subsp. funduliforme strain LS_1197 contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================================================================== ================== 75499 30 100.0 37 .............................. TATACACTCTTCTTCATTTAACCTCTTATTTCCTTAA 75566 30 100.0 38 .............................. TATGTCCACAACCCCTCAAGTGTTGGACTTCTGAACAG 75634 30 100.0 91 .............................. AGAGAGTTTGAAAAATGCTCTTATGGTACAAAGCGGGACTAAATCCAAGTTTAACTTTGAACATCTTGAAAGCCATTTACACTATCCACCA 75755 30 100.0 36 .............................. TCAGAACTAATACTAGGATTTGTAGCAATACCACTT 75821 30 100.0 37 .............................. TGTTCTAATGCTGTTTTCATGTAACTATCAGACATTA 75888 30 100.0 37 .............................. ACATTTAATACATTTGGCTTTGTACCTGTCATTACAG 75955 30 100.0 36 .............................. AAGACCTCTTCGTCTTTGCTATTGCCTTGACGTAAA 76021 30 100.0 37 .............................. ATTTTTTGCCTAAGTGCTAAGATTTGATTTCTGATTT 76088 29 93.3 0 .......................-.....T | ========== ====== ====== ====== ============================== =========================================================================================== ================== 9 30 99.3 44 GACTAAATCCAAGTAGATTGGAATTTTAAC # Left flank : AAAAATTTAGATACTGTGAAGAAAAATTATTGAATCTTTCTTTTTATAATCATCAAGATAAAAAGAAAGAGGAAAGTATAAGAGTATTTCTTATAAGAGATAAAAATAGCGATAATTTTAAATTTGAATCAATATTAGACGATGGCAGTAATAAGATATTTATTTCTAAAAATGGAAAAGAAATTACAATACAATGTTGTGATAAAGTATTAGAAACTTTAATGATAGAAAAAAATACTTTAAAGATAAGTTCAAATGGAAAAATTATTTCTTTAGTTCCTCATTATTCTTATTCTATTGATGTAAAATATTAAAAAAATTTTTTGTCGACCTTTCATAGTGTAAAATTTATGCTAGGTCGACAAGAGTATAAAAGCATAATATTATGCTTTTTTCTATAATTGAAGTTGTATTTGAGGCATTATTTTGATATAATTTTACTTAGATAGACAATAAGGCTATTATAAATATTTCAAAATATTAGAGTAATAGTAATACTA # Right flank : TATTGTTAATAAAAATCTTTAGAAAATAACTTTAAATAATAGATTTTTTTTATTCAAAACTTGAAATAAGATTTACATAAAAGCTTAAAAAGGGAGATTCCATTCTCTCTTTTTTCATAATTTCTTTCTTTTTTATATAAAGTTTGCTATACTGAAGGTGAAAACTTGTGAAAGGAAAGAAAGCATGGAAAAAGAAAAAATCAAGGAAATGTTGGAAGAGCGTTTTCAAGTAATTCCTGCATACCCTAGAAAACGACATATTCTTTTTTGGTATGATGGGCAGAAAGCATTTCAAGATATTATAGAGGAATTACAGCTTGATAAAGTAAAAATCCTTCGTTTGCAAAAAGGAGTCAATCGAAATGGAGAAGAAATTGATACCAATCTTTTTAAAATAAAATATACTTTGGAGATTTTGGATACGGATTCTCATTATTTAATTTATAGTGCTAATCCAAGACCCTCTAAGCATGAAAATTATCTCTTAGATATAGAAAGCT # Questionable array : NO Score: 2.61 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.60, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GACTAAATCCAAGTAGATTGGAATTTTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.50,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-88.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 9986-15116 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVDY01000010.1 Fusobacterium necrophorum subsp. funduliforme strain LS_1197 contig_18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 9986 30 100.0 35 .............................. ACGTTACGTTGTAGGATGAAAGAAAAAAAGGAGGA 10051 30 100.0 36 .............................. CTTCCAACACCCTTGAAGTACCTTTGATACCGCCTG 10117 30 100.0 37 .............................. AATGCAGGCGGATATAGGATATACTTCCGCTCGGCAA 10184 30 100.0 36 .............................. ATATTTTGGGAAGAAATGAATCCCGGTGATACGATA 10250 30 100.0 38 .............................. GATTGTCATCTAGTGGAGAAATTACTTTTGATGGAATA 10318 30 100.0 35 .............................. ATAAAGATAAAAAGTCTGTTAACAAACTTCTTTCT 10383 30 100.0 36 .............................. TTATAATATCCTCCAAAGTATTTTTGTATAAAAGGA 10449 30 100.0 37 .............................. TAGTTCATTTTCGGAACATGGAATATTTATGGTGCTT 10516 30 100.0 36 .............................. ACTGACACCGTTAAGGTGTCGGAGATAAAAAAATAA 10582 30 100.0 36 .............................. CTTCTTGCGACATCTAGCGCACAAGCAGGAGCTTCA 10648 30 100.0 36 .............................. AGCTCGAACATCTCTTTTTTGTGTTCCAAAAAATAA 10714 30 100.0 37 .............................. TTATGACGGGTAAAAGTGCACATATTTTGAATGCCGC 10781 30 100.0 36 .............................. TTTAAGGCTCTTTTTTTTCATCTTTGGTATTCTGAC 10847 30 100.0 38 .............................. AACTGTTTGCATACACAGAATAGACTTTTTCTGTGTTG 10915 30 100.0 37 .............................. TGTATCAGTCCGGTTGTGACTTCCTGCTTCAATACTC 10982 30 100.0 37 .............................. AGGCGATAAAAAAAAGGAGTGATGAAGAGAATGAGTA 11049 30 100.0 36 .............................. CCAAAACACGCCTAATTGGTGTGTCGGACTTTATAA 11115 30 100.0 38 .............................. TGAAAGAGAACTTTACGGAAGCTCAAGCAAAAGTCCTA 11183 30 100.0 37 .............................. TTGAGTAAAGGAAAGACAGCTCCTTTGCGTTGGGGAG 11250 30 100.0 35 .............................. GAAGGGTGTCGGAGTTAAAAAAAGATGTTAAAAAA 11315 30 100.0 36 .............................. CGATATAAGCACTATCTTTGCAGTCGTCGTAGATAA 11381 30 100.0 36 .............................. TCTTTTTCCATAGGGATAGTGTCAGGTTGCAACAAT 11447 30 100.0 37 .............................. ATATTATGAACCATTTATAGGGGGAGGGGCTATTTAT 11514 30 100.0 38 .............................. TCGTGAATTGGCGTAGACGGTCTTGGAGGTTTGACTCC 11582 30 100.0 36 .............................. AAAGCGGCAGATGCTTTGATTAAAATAGCCAATGTC 11648 30 100.0 38 .............................. AGTCTTGTTTATACTCCCTCCTCATCTTTTTGAACCTT 11716 30 100.0 35 .............................. TTCTTTCAGGTCTTTCGCCCAAGCGGCTAAGTCCC 11781 30 100.0 37 .............................. CACTAGGTCAAAAGCGTTCACGAGCTTCTGACTGCAA 11848 30 100.0 36 .............................. AATAATCCGCCAAACTTTGTGGCTCCTGATTGCGAA 11914 30 100.0 35 .............................. AACCAGTTCAAGGCATACAGGAGGGTGGAAAATGA 11979 30 100.0 38 .............................. TAAATAATCTGCACTATTTAATTCAATATCAAACTCTA 12047 30 100.0 35 .............................. TCAAATCTTCTTGCTTTTCGTCAAATGCCAACTCT 12112 30 100.0 35 .............................. ACCAATGATATTATACCACAAATCTTTCAAAAAAG 12177 30 100.0 37 .............................. TAAATACACACTCCTTTTAAATAGAAAAGCCACGATT 12244 30 100.0 35 .............................. ACCAATGATATTATACCACAAATCTTTCAAAAAAG 12309 30 100.0 37 .............................. TAAATACACACTCCTTTTAAATAGAAAAGCCACGATT 12376 30 100.0 35 .............................. ACCAATGATATTATACCACAAATCTTTCAAAAAAG 12441 30 100.0 37 .............................. TAAATACACACTCCTTTTAAATAGAAAAGCCACGATT 12508 30 100.0 37 .............................. TTTTTACAATGTCATCTTCTTTATATAAATCAATATG 12575 30 100.0 35 .............................. TTCCCAATAAATTTTCTAAAATTCTTGCACTTCCT 12640 30 100.0 37 .............................. CGATCTAAAAAGGCTATTAGGTTGCACTTCTTCAGCT 12707 30 100.0 37 .............................. CGATCTAAAAAGGCTATTAGGTTGCACTTCTTCAGCT 12774 30 100.0 37 .............................. CGATCTAAAAAGGCTATTAGGTTGCACTTCTTCAGCT 12841 30 100.0 37 .............................. CGATCTAAAAAGGCTATTAGGTTGCACTTCTTCAGCT 12908 30 100.0 37 .............................. CTCTATTCGTACATCTATCTAAACAATATTCGTTCTT 12975 30 100.0 36 .............................. TATATTCAGTATCCTCGTTCGAGAGAATGCGGTGGC 13041 30 100.0 36 .............................. TCTGATGTAGTGAATTTAGGACAAGGTTATCAGGAC 13107 30 100.0 36 .............................. GACGGAGAAAGTGTTGGATACAATCATCATGATTGG 13173 30 100.0 36 .............................. ACTTATTACGATTCATCTTAAGCTTCTCTTTATTGT 13239 30 100.0 36 .............................. TACAACTCTTCTTTCAACTTGATAATTGTTGCAAAG 13305 30 96.7 35 ...............G.............. ATAAAAGAATACACTGAGATTGTGTTTGATTTTGA 13370 30 96.7 36 ...............G.............. AATTTAGAAAATGCTTTAACAGGCTCTTCAGGAATT 13436 30 96.7 36 ...............G.............. CTAGATGAATGGAATAAACTCTATCGGATTTTTCAA 13502 30 96.7 36 ...............G.............. TCAAAAACTTCATATTCTTTTGATTCTATTTTCTTT 13568 30 96.7 37 ...............G.............. AGTTCTATGTTATATTTTGTAATCAATTCTTGAGCTT 13635 30 96.7 35 ...............G.............. TTGTTTGTCCTTTTCAATCCCCAAAGCCGCATAAA 13700 30 96.7 35 ...............G.............. TGTTATGGGCACAAAGATTTCTAATCAATTTTATA 13765 30 96.7 37 ...............G.............. TTGTATATCACAGGAAGTATTGGTTTTCAAAAGATAT 13832 30 96.7 36 ...............G.............. GAGCATGAAATGGAAGATTGGAGAAAAGAAGCACTT 13898 30 96.7 35 ...............G.............. AAATTCAAATTACTATTAAGATTATTTATTTTAGA 13963 30 96.7 36 ...............G.............. AATTATAAAGTGAAAAATAGAGAAACAGGAGAATAT 14029 30 96.7 36 ...............G.............. CTTGATTGTCTAATTTTTCATATCTATCGTAAACAA 14095 30 96.7 36 ...............G.............. TTTTCTTCCTCCTATCCGGGAGAGGAACCCCTCTCC 14161 30 96.7 36 ...............G.............. TTTGTTAAGAAGTGTTTACTTCAATGATTTGATTAA 14227 30 96.7 37 ...............G.............. TATAAACCGGACAGCGTAAACTCTCACTGGAAGAAGA 14294 30 96.7 37 ...............G.............. AGATGGTAGAATTTCAGAGAGTGAGAGAAGAAGACAA 14361 30 96.7 36 ...............G.............. ATCTTGTTTTAGTCACTAAATGCCCGTACTTGTCTA 14427 30 96.7 35 ...............G.............. TAAATTTTCAAAATGTGTTAATTTTAATTTTTTTA 14492 30 96.7 37 ...............G.............. CTCATCCAAGCGACACTTCCAACATTTGCTCGAATAG 14559 30 96.7 36 ...............G.............. TTTACGAATACAGCTGAACTTAATTCGTCTTTATAA 14625 30 90.0 36 ...........G...G....A......... AAAAAAGAAATCGGTATTTGTATGTTATTTTCTTCA 14691 30 100.0 36 .............................. TGGTAAAAAATCAAGGAGGTAAAAATATGAAAAAAT 14757 30 100.0 35 .............................. CCTGATATTGTAAATATCAAAGCAATTTCTTATGA 14822 30 100.0 37 .............................. TGGAATTTTTCCTTCTTCTAATGACTTAATGACACTA 14889 30 100.0 35 .............................. TGAGGTGATTGATGAAAGCAATCTAGTCAATGCAA 14954 30 100.0 35 .............................. ATGGGCAAGGAGGAATCTTATTTCGAAAAAACTTG 15019 30 93.3 37 ...............G........A..... TTTCTTACTATCTGGAAACATGCTATTTTTTCAACAA 15086 30 70.0 0 ..C........TT..G.A.TT...TA.... | T [15108] ========== ====== ====== ====== ============================== ====================================== ================== 78 30 98.6 36 ATTAGAGTATTACTAAAGTAGAATGTAAAT # Left flank : TTCCAAATGTGGTGGTGATAAAATATGTATGTAGTAGTTGTATATGATATCTCTTTAGATGAGAAAGGGACTTATCATTGGAAAAAAATTTTTCAAATTTGCAAACGATATTTGCATCATATTCAAAACTCTGTGTTTGAAGGAGAACTATCGGAAGTGGATATTGAGAGATTAAAATATGAAGTATCTAATTATATTAGAGATAATCTAGATTCTTTTATTATTTTTAAATCTCGGAATGAGAGATGGATGGAAAAAGAAATGTTAGGAATACAAGAAGACAAAACAGATAATTTTCTGTAGATATTTTCATTGTCGACCTCTCATAAGGTAAAAATCCCAGGACATTGACAAAAGAATAAAAGAACTTGATTTTCCAAGAAAAAAAGTAAAGATAGAAAAATAAAAAAGGGTTTTCTTTTAATTTTTTTTATAAAATAACTTTATCGACAATTATAGTCAAAAAAAGTTATAGATAGCAATGTATTTTAAAGTCTCGT # Right flank : TTTGAACTATAACTAAAAAAGAGGTAAAAATGTTATGTTGGATTAAAAATCTGCAATATATGGGTTCATTATTGAAGATTGTTTGAGAGTTTCTTTTGAATTAAAAAAAGGGAGCTTTCATTGTAAGAGAATACGTAAGGATATGGTACACATAATCAGGTTACTGGAACTTCGTCCGACGACATCACCGTGATGTTGACAACTTTAGATTCCTTAAAACAAAGTGAAAGACAAATTAATATGGAAGATATGAAAAAAAGATTTAGTAATTGTACAAATGACGAGATTGACAAGAGTTCAGAAATTACACATGTTCACTCTATTTCAAAAGAAGCTTGCAGAATTTATGTGGAAATAGTGAAAAGTCTGATTATAAATAAAAATTTAAAAGACATCTTAGAGAATTTGGAATGTACAAAAAATTTTCAAGATTAAAACATCTCGATACTTTGTAGGAAGAGCAATATATTATGAATGCTTTAGGAGGTAGTTTGTGATGT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAGAGTATTACTAAAGTAGAATGTAAAT # Alternate repeat : ATTAGAGTATTACTAGAGTAGAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //