Array 1 1369072-1372389 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP010311.1 Geoalkalibacter subterraneus strain Red1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1369072 32 100.0 33 ................................ GCCGTGAGCAAAGCGTTTTCAATCGCGGAAGCT 1369137 32 100.0 33 ................................ ATGGGTGAACCGCAAGAGGTCGCTTATACAGAC 1369202 32 100.0 34 ................................ CGGTCTTTACGATGTAGAGACCGGCGAGAAGGTC 1369268 32 100.0 33 ................................ ATCATCAACGCAGACTTTCCGACGCTTGGTCGC 1369333 32 100.0 34 ................................ AGGAAATTGTTAATAGTGAGGAGGAGGGAGCAAG 1369399 32 100.0 35 ................................ AAAGTCCCACCAGCTTATGTGGCGGCTGAAATATC 1369466 32 100.0 34 ................................ GTAGTCGGCTATCTCGTTGCCGCTTTTATCTACG 1369532 32 100.0 35 ................................ ATAAACAGGCGTCCCGACTTTGAGCGCGAACTTGA 1369599 32 100.0 34 ................................ ATCTCGCACAGCAAGGCATAATGCTCAGTCCGGC 1369665 32 100.0 33 ................................ CTCAGATGCTGTGGCAGATGGCGTGTTCCGGCC 1369730 32 100.0 33 ................................ GTGGAAGCTGTCACAGGCCGGCATGCCGTCTCC 1369795 32 100.0 33 ................................ ACCTGGTTGACGGCCAACCAGTAATAAGGAGCC 1369860 32 100.0 34 ................................ CAGATCAGGCGCTGACAAAGATCCCCGGCAAAGC 1369926 32 100.0 34 ................................ AGTTGATCTTTGATGGATTGCATGATTTACCCTT 1369992 32 100.0 34 ................................ AGCAGGTTGTAGGTTACGTCCTCATAGTTCCGAC 1370058 32 100.0 34 ................................ GCCCATGATCTGGCTGGCTGTTTTAGTCGCGGAC 1370124 32 100.0 33 ................................ TGTCCATGGGTGTTCCTCCTTTTGGTTGTTTGT 1370189 32 100.0 35 ................................ GAGCATCCTATCTTTTGCTTCAAGGCAGAGGGGAA 1370256 32 100.0 33 ................................ TTCCGAGGAGGAGGGAGCAAGTAAAGCGCGGAT 1370321 32 100.0 34 ................................ ATTGATCTTTTGTTGCAATGCACTCAGAGTGCGC 1370387 32 100.0 34 ................................ ATCAGCCGATTTGTCATCAGAATCAGTTTGATTC 1370453 32 100.0 33 ................................ TATCTTTACAGCGTAGGTTTTTGTTGTTAAAGT 1370518 32 100.0 33 ................................ TAAACACCTACCCTGGCCCTTATATGCCTGGAC 1370583 32 100.0 33 ................................ TCTGCTACTGGGGAACGTCGTTACCATTTTATC 1370648 32 100.0 34 ................................ ACCTTGCCTTTAGCATCCATTTACTTTTTAGGGC 1370714 32 100.0 33 ................................ CTGTTCGGTGGTAATTCTTTGCTTTATGCCTTT 1370779 32 100.0 34 ................................ TATATAATAAATAAGCAATTCGCGTGCCAAAAAT 1370845 32 100.0 34 ................................ GCTATTTGCTCCGCTGTTAGCATGGCCTCTTAGC 1370911 32 100.0 35 ................................ ATAGCAAGGGGGCTGTGAAACATTCGGGATGGCCT 1370978 32 100.0 35 ................................ AAACACCTACCCTTACAAGGCTATGCCTTGCCTAT 1371045 32 100.0 35 ................................ TTCTATAAATTAAATCGTAAAGACTCTCCCAAAGC 1371112 32 100.0 32 ................................ CCTGTTGTGTAGGGTATATGCCTCGATGCTCT 1371176 32 100.0 33 ................................ ACACAAGTCGCCAAAAACCCATCCCCTTAAATC 1371241 32 100.0 36 ................................ AAAAGCACCAGCCAGAAGGGCGTGCAAAGTAATTCT 1371309 32 100.0 34 ................................ TCGTTATCGCTCTGTTTATCAGCTCTGGCATGAT 1371375 32 100.0 34 ................................ CGATACGACTCAAACCACTTATGACGGTCCGGCC 1371441 32 100.0 33 ................................ ATAGTAAAATAGATGAAATCAAACATCGTCCTT 1371506 32 100.0 33 ................................ TGTTTGGCGGGAACACTTTGCTTTATGCTTTTG 1371571 32 100.0 35 ................................ ATCAAGCGCAGCCGCAAATATCTCGGCCACAAAGG 1371638 32 100.0 35 ................................ TGCCGCTTGCTTAAAAACAACGTCGTCGGCCACGC 1371705 32 100.0 34 ................................ TATAAACAACCGTTCTTTCTTCGTTTTTGCTGTC 1371771 32 100.0 34 ................................ GCCCGACAAAACACCCTCGATGAACAGCTCGAAC 1371837 32 100.0 33 ................................ TCTAAGCCGTTGTTTGGGTAGTCGTTGCGCAGC 1371902 32 100.0 34 ................................ CTGCTCGAGGTTGACGGTGGGGGCTGCGGGCTGC 1371968 32 100.0 33 ................................ ATCTCGTTTATGATCTGCTCGGCTGAGGCGAGC 1372033 32 100.0 33 ................................ ATTATCATCTGCACCAACGCCGTTGACGAAGCC 1372098 32 100.0 34 ................................ GTCCACGACCACAAACCCTTTCAAGGAAAAGGGC 1372164 32 100.0 33 ................................ ACCCAGTTCGAGACCAGCTTGACCGATCTCGGC 1372229 32 100.0 32 ................................ GCCGATATCGCGAAAGACCGGCGCGAGGTTGC 1372293 32 100.0 33 ................................ CCCGCAACCAGGTCGAAATCGAGCTCGCCGAAC 1372358 32 90.6 0 ..........................G.CT.. | ========== ====== ====== ====== ================================ ==================================== ================== 51 32 99.8 34 GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC # Left flank : GCGCGGGGATCTTGACGAATATCCGCCGTATCTGTGGAGATAACAATGATGGTGCTTGTAAGTTATGACGTAGCGACAACCGATTCAGCAGGCGCCAAGCGGTTGCGCAAGGTGGCCCGGATTTGTACCAATCACGGCCAGCGGGTTCAATATTCTGTGTTTGAGTGCATCGTCGATCCAGCGCAATGGGTCGTGTTACGCCAGCAGCTTATTCGGGCTATCGATGATGCGCAGGACAGCCTCAGATTTTATTTCCTGGGAGCGAATTGGCGGAAACGGGTCGAACATATTGGGGCAAAGGTCGCAATAGACCAAGAGGGCCCTCTAATACTTTAGCGAACCCCAAGCGGTTTCAGATTACCCAGGGGGTTCGCATAGCCTGATTTTTGGTAGCTTTTCGAACTTTTAGAATTCGATATGTCAAACTTTCAAGCTGAAATAAGTAGGTTCGCGGAATTTGGATTTAAAGAGATTCAAAAACAGTAAGTTGCAGCAGGACA # Right flank : CATATCGGGTCGGACCAACCCAACTATTTGAAAATAAATCGAAAATCTGTTGTGTGGCGCACTGTTTAGGGCCTTAGACGGTCCATTTTGACCATAAAATGAGATGTTTAAGGGCGGAGGGGGCTATGCTCAGTTACCGTTTGGAGTAATCACAGAAGGCCCGGGCTCAATCGGGGCCTCATCAAGATACCCCTTAGGAGCAAACCCCATGAAATGCTTAGTCTATAATCCTCAGAAAGGCCGCCTGGAAACGCTTGAGGTGGAAGTTCACACCTGAGAACACGACGCGGTTCAGCAGCCGCGGCAATGGTAGCGTCACCATGATCACCGACTGGGACGGTGGGCTGCTTATCAAGTCGGGCTTCGACCACACGATTTACCTGTACGATGTCTCCAGAGCGGATATCGGGCACAGTCAGCAAAGGGCCAGAGAGCTTCAGCAGCAATATGCCTAGCAGAGCTGTGGGAGGCGGCTGCAAGAAAGCTCAGCAGCCTACTGC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCGTGCGGGGGCGTGGATAGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.60,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 160059-161202 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP010312.1 Geoalkalibacter subterraneus strain Red1 plasmid pGSUB1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 160059 37 100.0 36 ..................................... CTGGCCGCAGGCATCAAGCCCGAAAAACAGTGGGTC 160132 37 100.0 40 ..................................... GAGCCCCTCACAGGACAAGGGCGCCAGATCATGCATAGAT 160209 37 100.0 39 ..................................... AGCAAGAATTCTTGGTTAATGTGAGGCGCGTAGATTCAG 160285 37 100.0 36 ..................................... CATACTTGGCGTCGCCGAAATAGTCATGTATCGCAT 160358 37 94.6 38 ....................A...T............ AGATGTTTACCTTTAAATAAGGGCGAAAAACGACCTTT 160433 37 100.0 37 ..................................... ACCCTTCTTCAAATTAACGCAGTACCGGTTTTGACCG 160507 37 100.0 37 ..................................... AGTCAATCCTTTAGTGAGATAGAGCTTCTGCGCGGCA 160581 37 97.3 36 ....................A................ CTCGACGAGCAGTAGGCCCTGATTACCCATCGACCT 160654 37 94.6 37 ..................A.A................ AAGTATTTCCCTCGCTTCGATGGAAAGAGAAATTCAC 160728 37 94.6 38 ....................A...............T ACGTGTTTTTGGCGGATGGGACCGGGCGCAAGGCAAAT 160803 37 94.6 39 ...........T....................T.... TAGCGCAAGCTAGTGCCATCGATCATACGATGCTTAGGG 160879 37 94.6 36 .............A......................A TGATTGGTTTTGGTGATTCTTGCATACAATTGCCCC 160952 37 78.4 36 ....C...........TTT....A.....G..A...T GGCCTTCTCACAAGTTGCGAAATCTCGATATCACAC 161025 36 83.8 29 ....C..........-.TT.A..A............. ATGTGTGAAATATCATACTCGCCCTGATT Deletion [161090] 161090 37 94.6 38 ....C...............A................ TTCTGGACACTCTGGCGTATCCGCCGATTCGTCTGCAG T [161104] 161166 37 70.3 0 T...C......T.....TAAC..AT.......A...A | ========== ====== ====== ====== ===================================== ======================================== ================== 16 37 93.6 37 GTTGTAATAAGCTGTAAAGTGTTGCGGCTTTGGAAAC # Left flank : TTGCACCAGAAGTATCGCTGGGTTGAAAAAGCCCAAGCCTGGTGTGTCGGCGACAAAGACTCGGTGGAGGAGCTTCTGCAGGAATTGACCCACCTCGGGAGTCTGACTCGCAACGGATTTGGTGCCGTAAAAAGCACAACCGTTGAACTGGCCAGCGAAGATCAAAAGGAGAACTGGCGTATTCGCCCTTTGCCCGTCGAAGCAGGACTGGAAAAGCCGGGAATAACTTACGCCATGGCCATGCAGTCAGTCAGACCTCCCTACTGGGACCGCACCCAGTATCAAAAGGTGCTGGTTCCAATCCTGCCCTTCTAGCGCGAGCGGTGTGGTGAAGAAAAAAGAACGGGCAGCTCTCGAACAAGATAATTGGTGAAACTTAAAGGCGTTTTGTATTTCTTGCATTTTTCAGAAAAAAGCCGGAGATCTTTCTGGACAAAGCTTCCAACCCTCTCGAAAAACAAAGGCTTAATGCCTATTAGGTGGGGGTAAACAAGAGGACA # Right flank : ATAGACAAAAATAAGGAAAAACAATGACTCATGCCTTAGCCCCGGCTTTTCGTACCCATCAACAAAAGTTCTATAACAACCTTATATCTTCTTTTGACAAGGAGCGAATATCTCTAAACGAGGGTGCGACAGGAATGGGCAAAAGCCGTGCGATGGTCCAGGCCGCGCTCGACCTTCTCGATCAGCACGACCAGCCTGTAGTTATCTCCTGTCCAAGCATCAGCGGCCTGCAACAGATGTTAGGCGAGCTTTATGCGCTAGAATCAAAGTCTCGACACCGGGTTGCGGTTGCGCTGGGACGAGCCAACTTCTTTGAGCCGAGTCGCGTGATTGATTATTTGGAAAAAGAGATGTCCGAGCAGGAATCTGCACCGATCCTGCAGTGGATTAAAGACGGTGCGCGCTCAACAAACCAGCAGGACGGAGGCCCCCTGTCGCGACTTTACCCACAGATCGGGTTTTTGCTTGAGGACCTGGTGCACAGGCTCCCGGAAGGATTT # Questionable array : NO Score: 2.52 # Score Detail : 1:0, 2:0, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.58, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAATAAGCTGTAAAGTGTTGCGGCTTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.00,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-34] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //