Array 1 145616-147230 **** Predicted by CRISPRDetect 2.4 *** >NZ_UCXI01000007.1 Escherichia coli strain VREC0489, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 145616 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 145677 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 145738 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 145799 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 145860 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 145921 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 145982 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 146043 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 146104 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 146165 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 146226 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 146287 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 146348 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 146409 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 146470 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 146531 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 146592 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 146653 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 146714 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 146775 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 146836 29 100.0 32 ............................. GCTCCCTGTCAGTTGGAATCGATAACGTTGAT 146897 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 146958 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 147019 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 147080 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 147141 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 147202 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 162732-163432 **** Predicted by CRISPRDetect 2.4 *** >NZ_UCXI01000007.1 Escherichia coli strain VREC0489, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 162732 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 162793 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 162854 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 162915 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 162976 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 163037 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 163098 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 163159 29 100.0 32 ............................. ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA 163220 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 163282 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 163343 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 163404 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 12 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //