Array 1 62655-61222 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBDI01000048.1 Escherichia coli strain Sum2013_WWKa_ALT_44 Cont048, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 62654 29 100.0 32 ............................. CCCCAGCGCGCTAAGAACTTCGTAAATATTGA 62593 29 100.0 32 ............................. CCGGCGAAGTCTTTCCCTCTGTCATCGTGTTG 62532 29 100.0 32 ............................. CTTTTCCGAGCTCACGAGTTACCGGCTATCGC 62471 29 100.0 32 ............................. TTGACCCATGCGCTAAGGTCAAAATGACCCAA 62410 29 100.0 32 ............................. CACTGTTATTCAGAGGGGTAAATAAAAAATAT 62349 29 100.0 32 ............................. ATTTGCTCGCGATGCGCCTGCAGCTGGAACCC 62288 29 100.0 32 ............................. GGGCTAAAAGACGCGTCGCCGCCAGGCGGCTT 62227 29 100.0 33 ............................. TGGATTAATCCGCGGCTGGCGATATCTCGCAGC 62165 29 100.0 32 ............................. CCCCTGTCGCCGTTGGCGGATTCTTTCCTGTA 62104 29 100.0 32 ............................. TCAGCGTAATATCACCCGTCAGCGCCTTATTA 62043 29 100.0 32 ............................. TCGAGCTGCTGGCGCAGGACGTCGCAATTTAC 61982 29 100.0 32 ............................. CGATAAACGCTCAATACCAGCCGGAATAATCG 61921 29 100.0 32 ............................. GCGGAATCTGCTGCGCACAAGTTACACGGCGC 61860 29 96.6 32 .................A........... CCTTGATCGGATTCCAGAAACGAACCACTAAA 61799 29 100.0 32 ............................. CCGCACCCCGCGCGGTTGGTCTGGATGACAGT 61738 29 100.0 32 ............................. TCGTTTAGTGTGGAATTTGGCGACGCGGAGCG 61677 29 100.0 32 ............................. GTTAAATATTGTTCACCATCATGGATCAGGAA 61616 29 100.0 32 ............................. CCGAACGGCTGGCGAAGCAGGTGGCTGGCGTA 61555 29 96.6 32 .......T..................... GTTTACCGCCCCGCAGAGGCGCTGGCAGATCC 61494 29 100.0 32 ............................. GGATGACCTGTCGCTAAAACTCGCCGCGTACA 61433 29 100.0 32 ............................. TCCGTTTGGTCCACCAAATGTTTGATGCTTCA 61372 29 100.0 32 ............................. TTCAGGGTGTGATTCCGCATACCAAGCAGTAA 61311 29 96.6 32 .A........................... GGCGCACTGGATGCGATGATGGATATCACTTA 61250 28 72.4 0 .AA........C..T....T-.G.....C | C [61225] ========== ====== ====== ====== ============================= ================================= ================== 24 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GATGATTACCCCTGGCTGACGCATGTCACGAAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGACTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : AGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAATTAAGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTTTCGGTGTCACTCATCCGCTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //