Array 1 115195-114253 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUAW01000001.1 Flavobacterium columnare strain CSF-298-10 NODE_1_length_1006071_cov_235.384, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 115194 36 100.0 30 .................................... TAACGCCACAAATATATAAATAATAATTGA 115128 36 100.0 30 .................................... AATGACAAAGAAAGAATTGATTCATTCAAA 115062 36 100.0 30 .................................... TTGTTTCCAACTGTCGTATTCAAAGTAACT 114996 36 100.0 30 .................................... AATAGTTAAATAAATTATAAGGGTATTAAG 114930 36 100.0 29 .................................... TCACGTCGTTAGGTTGATTATTAATACAT 114865 36 100.0 30 .................................... GATGTTTTTAATTTGTTTTATTGTATATTT 114799 36 100.0 30 .................................... TCTTCCACCGACAATAGTCTAAATAAATCT 114733 36 100.0 30 .................................... TCTTCCACCGACAATAGTCTAAATAAATCT 114667 36 100.0 30 .................................... TGAAATTTCTTTTACCGCCGTATCCACTTT 114601 36 100.0 30 .................................... TCAATATGAGGCATGTTAATTCCAGTAAAT 114535 36 100.0 30 .................................... TATAATACCCTGACGACCAAATCTTTTACA 114469 36 100.0 29 .................................... CTGTCTTACAAAGCAATCCAGTACGTGGA 114404 36 100.0 29 .................................... TTGCGCAAAATCTGTGATATTGTTTTTAC 114339 36 100.0 15 .................................... CACACACACACACAC Deletion [114289] 114288 36 69.4 0 .........................AGGGACGAGCG | ========== ====== ====== ====== ==================================== ============================== ================== 15 36 98.0 29 GTTGGGAAAGCCCTTATTTTGAAGGGTATCTACAAC # Left flank : TGAAATCATAAATTTAGAAAACATAGATATTGAAATTTTACTTAAATATTATGATTATAATACTGAAGAGTTGAAGGAAAAAATAAAAAATATGGATGAGGATGAAAAAGCCAAAATAATTAATACTAAAGAGAATTATAACAAAATAACCAATGTTTTAATTAAAAAAGCACTTGTTTTAATTATCATTCGCAACAAAATGGCGCACAATCAATATCCACCTAAATTTATTTACGATTTAGCGAATCGTTTTGTCCCAAAAAAAGAAGAAGAATACTTTGCGACCTATTTCAACCGAGTTTTTGAAACCATAACAAAAGAATTATGGGAAAACAAAGAGAAAAAAGATAAAACACAGGTCTAAATACAATTGCTCTTTGACATTTTAAATTAGGATTAAAAAAATGACTACATTTGCAGTGATTAAAACAAAAAAAGTTCATTTTTTTGTATAAAAAATTGTAGTAATCCCTTACTATGAGAGGCTTACCAGCGTTTAG # Right flank : TTAAAAAATAGTCCAATGGACTATTTTAGCGAAGTAGCCAGGAGGCGCGTGGGCGTTTAAAACCGAATTCAATTTTTTTGAAGGAGGGACGAGCGTTAAGGAAGCTGTCCAAAAAGTACTAATTCAACATCCAGTTTGTCACTCCTACGTAAGGAGGAGTCTCATAATCAATAGTATGTAATTTCTTCCTTTGGTCAAAATCACAAGATTGCGAACTTTTTGGACAGTCTCTAGCAAAATAGCGAGCAGGCGTTTGAAACCAAATTCAATTATTTAAAAAATAGATAAACCATAATTCTTATTCATAGAAATACCTCTTTTTTTAAAATAACAAAAACAAACCTATAACACAATCAAGTAAATATGATCTGTATACTACCTCCTAAACTTCCTTATAATTTAACCTCAACACCTAAGATATTTTTGTAAATTTGAATCATCAAACCATTTGGAAACATGAAGGCTAAATATATTAATCCGTTTACCGACTTTGGATTTAA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGGAAAGCCCTTATTTTGAAGGGTATCTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 2 674489-671701 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUAW01000001.1 Flavobacterium columnare strain CSF-298-10 NODE_1_length_1006071_cov_235.384, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================================================= ================== 674488 36 97.2 30 ......A............................. TCATCATTTATTAATGAATCAAAATTATCA TAATA,T [674474,674485] 674416 36 100.0 30 .................................... ATTTTATTTTTTTCAAAGGTCAAGGATGGA 674350 36 100.0 30 .................................... ACAAATATAAATTATGACAACTTTATCATT 674284 36 100.0 29 .................................... TAAATAAAAAAAGTTTAGTAAAAGTTTAG 674219 36 100.0 73 .................................... TCTGTTAATAATAGTAATCCCGTTTATATGGTTGTGGTTTACAAACACCAAGTCAATATTTGTTATAGGTGTG 674110 36 94.4 30 T.....A............................. TTTTAAAATAGTTATCAAAAAGATGTTAAC AATAT [674098] 674039 36 100.0 30 .................................... TAAATCATCAGTAGTTCGTATTGTGGATAT 673973 36 100.0 30 .................................... ACTGTTTCTAATTTTGCATTGTCCCAGATA 673907 36 100.0 30 .................................... ACTATAGATGATATAATTTAAGGGTATAAG 673841 36 100.0 30 .................................... TTAGTAATCAAAATTAATTTTGAATTGCAT 673775 36 100.0 30 .................................... TTTAGAGTGCAATACGGAAATTTCCGAGTA 673709 36 100.0 30 .................................... AAAAATTTGTTAAAGTTTTGTTGAAAAGTA 673643 36 100.0 30 .................................... AACAAAAAAAAAGGAGGTACAGGATTTGTA 673577 36 100.0 29 .................................... TCTTTAAATATTATTTCAGGAGCTCATAT 673512 36 100.0 30 .................................... CCGTATCATGTCTGATTTTATTATGGCCTA 673446 36 100.0 30 .................................... TTTTTATTTTATTTATATAAATGTTTTCCA 673380 36 100.0 30 .................................... TAATTTTCAAGTTTCTCCTTTAGGATTAAG 673314 36 100.0 30 .................................... AATGATTGTTTTTTGTTGTAATATTGAACA 673248 36 100.0 29 .................................... CTATTTTACCTCCACCCCCTGCCTGATAT 673183 36 100.0 30 .................................... TATAACACTTCCAAAAGCCGAATATTTGTA 673117 36 100.0 30 .................................... TGGCGCAACGAAACAGAGATTACAATTGAA 673051 36 100.0 30 .................................... TCCAGCAGATCATTTAGCTTTAAAATTCAA 672985 36 100.0 30 .................................... AAAAATTCAATTTATTACACGAATGGGGAA 672919 36 100.0 30 .................................... TTTTGCTTATTATTTGATACAGTTCTTGTA 672853 36 100.0 30 .................................... AAATACCAGCAAATATTTGAACACTAACCA 672787 36 100.0 30 .................................... AATGGTCTTTTGGTTGCTTTCTGTTATATA 672721 36 100.0 29 .................................... TATCAATAGCAAATTCGTAGCGCACTATA 672656 36 100.0 30 .................................... GAAATTAGACAAAGTTTAGGAGTGGAAACA 672590 36 100.0 30 .................................... TTTAGACGTAATTGGGAAATGGTTAAAGAA 672524 36 100.0 30 .................................... TCTTTTTCTAATAATTCTGATGCTCGCTTA 672458 36 100.0 29 .................................... ATTTTACAAGAATGGCAAGAATAACAGTT 672393 36 100.0 29 .................................... GAAAAGAACTATTGATTAAAGAGTAGCTA 672328 36 100.0 30 .................................... TTAAATCCACAAAATGGGCAAATAAGATAA 672262 36 100.0 30 .................................... AAGAACGTTAACCGAGATACAAGAAAGTAT 672196 36 100.0 30 .................................... CGGAACGGTTACGCTCGAAGAGTTTATTAA 672130 36 100.0 30 .................................... TCGGACGATTATAGAAATTTAGTAAAAGAA 672064 36 100.0 29 .................................... ACTTTGTAGCTAACTATACAATGGAAGAG 671999 36 100.0 30 .................................... GTTGATTTAAACGTAACAGGAGGACAAATC 671933 36 100.0 30 .................................... AAAAAGGATTTTAGACACAATTAGTCACTT 671867 36 100.0 29 .................................... ACGCACAAGATCGAAATAGAAGAGCTTAT 671802 36 100.0 30 .................................... TCTTTATCGATTAACAGCTCGAGACCGTCA 671736 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================================================= ================== 42 36 99.8 31 GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT # Left flank : AAATGCTTGCCGAATTTAAAAAACGATTAAATGTATAATTATGATTTAAGCGAACAAGCTAAAATAGATTTGTTGCGTATTTATGAATATGGAATTGGTCAGTTTAGTCTAGACCAAGCTGATAAATATTTTGACATGATGCACGATTGTTTTAATAAAATTGCTAAAAATCCATATTTATTCCCTTTGGCATCAAATATTAAGTCAAATTATTACAAATGTGTTTGCGGAATTGACACCATCTATTATAAAGTTGTTACAAATGGAGTTATCATTACAACAATAGTTGGAAGGCAGGATTTTGAAATTCAAAATTTAGTTCATTGACATACACTATCAAATCGCAAATAACCAAACCTCATACTGATTGGTTTGATTAAAGATTAGAAACCGAGGGACGAGGTTCAACGAAGTCAAAACACGATATTATTTGGTTAAAAATTACGATTGTAATTTCAGTTGTGGTTTACAAACACCAAGTCAATATTTGTTATAGGTGT # Right flank : AGCTAACAGCTTAGTTATTAAATATCAAAGCATTAAGCCAAAATATCGTTAAAAAAAATGCTTCTTTTTTGGCACGTTATACCAAGATTGAAGCATTTTTTTATTTCTAAAACAGTTCCAGTTGGGTGGGTTGTGGTGCTTTAGGGGTTTCTACTTTACCCCAAAAGTTTTGTATGTTCCCAAATTGCTTGTCTGTAATTCGTAACATACTTACTTTTCCTGAAGGAGGCAGGAGTTTGTGTACACGTTTTTCATGTACATCGGCACTTTCGCTACTGGCACAATGCCGTATATATACCGAGTATTGCATCATACTAAAACCATCTTTCAAAAGTTGGTTCCGAAATCCAGAAGCATTTTTTCGGTCTTTCTTAGTCTCAGTAGGCAAATCAAAAAACACAAACAACCACATAATTCGATACCCGTTTAAATCCATAATTTTGGGTATTTTATCTTTTTACGATCGCCCGAAAAACACTGTTGTAAGGAACTTGCCGTTT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //