Array 1 554098-559566 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVEO01000001.1 Harryflintia acetispora strain AM01-30 AM01-30.Scaf1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 554098 33 100.0 34 ................................. CTTGCCGTCATCCAGGTGCCCGAACTTGTGGAGG 554165 33 100.0 33 ................................. AATAAGTTTGACGCCCTGCCGATACAATGCAAG 554231 33 100.0 34 ................................. CTTGCCGTCATCCAGGTGCCCGAACTTGTGGAGG 554298 33 97.0 33 .....C........................... AATAAGTTTGACGCCCTGCCGATACAATGCAAG 554364 33 100.0 33 ................................. AGCCGAACGGTGCGGTGCTCCTCGATGGCTGTC 554430 33 100.0 35 ................................. CAGATGGTCCTCTCGGTGGAGGACCCTGTCGCCTT 554498 33 100.0 34 ................................. TTTCTTCCCATGTGTGTCCTCCTTAATGTAATCA 554565 33 100.0 34 ................................. AGATCCGTGACGTGGCCGGTCAGCTGGCCGAAGC 554632 33 100.0 34 ................................. CTACGGCGAGATGTTCGGGCACGACGACTGGTAC 554699 33 100.0 35 ................................. CGGCACCAGACCACCACGGGGGCGTTGGGGTTTTT 554767 33 100.0 33 ................................. AAATAGGTGGTGGACTGCTTAATCTTATCCTTG 554833 33 100.0 35 ................................. AAAATCTATTCGGATGGATAAGGCGGGTGAAACAG 554901 33 100.0 34 ................................. CGACAACGATCTGCTGGTAATCCGAGCGAGCCAG 554968 33 100.0 34 ................................. TTATTTGCTCCCCTCTGCATTTCCCCGGCTTGGG 555035 33 100.0 34 ................................. GACTGCTTGATACCAATGGGGACGGGGACTCAGA 555102 33 100.0 34 ................................. TTCTTCGTTTTTATGGTGTGAGACCGGCCCGTCA 555169 33 100.0 34 ................................. CCTGCTTGCGAAAAGGGTTAAAGCCTACTTCCAG 555236 33 100.0 34 ................................. CTCTGTCCCGGATTGAGGGCAATCAGGAAGGGGC 555303 33 100.0 33 ................................. TGCAATGCGCTTGAAAAGGCTGGCTATTATGTA 555369 33 100.0 34 ................................. TTTGATTCTGATTGTTGGGCTTTCCTTGTGAAGC 555436 33 100.0 35 ................................. TATCAATGACGCTTGACGAACTGAAACAAATGCTG 555504 33 100.0 33 ................................. GCTAGTGTAGCTCAATTAAGGCAGAGCAGCCGC 555570 33 100.0 34 ................................. GTCACGGAGATAACGGTGATTGCATAAGGAGGGA 555637 33 100.0 34 ................................. ATCATCATCCGATTGGACGGTGAAACTCCAAACC 555704 33 100.0 34 ................................. GTAGAATTTGCTTTAAATGGCTTGAAACGGTTCC 555771 33 100.0 35 ................................. GTGATTGGATGGAGCATTATAACCCGGCAGATTAT 555839 33 100.0 34 ................................. GGGATTATGACAGCTTAGAGGCTGCAATCGAAAG 555906 33 100.0 35 ................................. CCGGATGATGAAAGCTATCAGCGTCAAAAAGCCAG 555974 33 100.0 38 ................................. GCCCGATGGTATCACATGGACAGTAAGAACGGCAGCAG 556045 33 100.0 35 ................................. CTTCGCTGCAAGAAGATTTACCCGAGGACGAAGAA 556113 33 100.0 34 ................................. TCAAATGGCCTGCGCTACCCGGGAGACCCGGCAT 556180 33 100.0 33 ................................. ATCGGCAACTTGTTTTTGGGTCAGGCCCATTTC 556246 33 100.0 33 ................................. CGTCATGGACGAGGTAGAAAACGGGGCCAACCG 556312 33 100.0 34 ................................. ATAGGGAAAACAAGCACCGTGCCGATATGTATGA 556379 33 100.0 35 ................................. TCCCTCCTGTATCCTTGATTTGTTGAAAATTACTG 556447 33 100.0 33 ................................. CCGTCGCCAAGATCGGCAAGAGCCTGTTGATTT 556513 33 100.0 35 ................................. CACAGGTCGGGCGGGGCGTAGTAGGCGGTGATCGC 556581 33 100.0 35 ................................. GGGAGGTTCGGGACGCTAAATTAAAAACGCTTGAT 556649 33 100.0 33 ................................. GGTTAACAGAGCCAAAGCGGAGTATGTATACAG 556715 33 100.0 33 ................................. CCAAAGTGTAGCCGCAGAGTATAGAGATAAAGA 556781 33 100.0 34 ................................. ATCCATGCACCAGCCCTTGTTATTCGAGACAATA 556848 33 100.0 34 ................................. GCCATCTATTCCACCTCGAATGTCAAGCCTCTGT 556915 33 100.0 35 ................................. TGTTATATTCCAGAGTGCTATCCTTAGCCGATCTT 556983 33 100.0 35 ................................. GATCATATCTATAATGGGCTGGATTTTGGATTTGC 557051 33 100.0 34 ................................. ATCAAATAAGCCAAGAGATTTCAACCTTGCTTCT 557118 33 100.0 36 ................................. GTTAAGGCGGAAGTGGATAAGACTTTCAAAGATAGC 557187 33 100.0 34 ................................. AGGCGCACCCGAGGTCATCAAGATTTTGCCCCTG 557254 33 100.0 33 ................................. ACGAATGCGCTAGATTGCTAAACAAGTCCCCGC 557320 33 100.0 33 ................................. ATGAGCGAAGAATATATACGCCTTGCCGAAGAT 557386 33 100.0 33 ................................. ACTCTTGGAATAATATTTTTAGCAACCGTTACC 557452 33 100.0 33 ................................. ATACAAAGAATCCATCATAGTGGAAAAAGCCCA 557518 33 100.0 34 ................................. AAAGTGCATTGCCGAGCTACAGGAGAAGGTGACA 557585 33 100.0 35 ................................. ATGTCCGCCGCTGACAAGGCAAAGCTAGATACCAT 557653 33 100.0 33 ................................. ATCCCGAGGGGGAAAAATGTATTGCTTCCGAAC 557719 33 100.0 34 ................................. CTTAATATGGTTTTACATAATATATTATAGCACA 557786 33 100.0 35 ................................. AATGTATCCATAGACTATCTTTTGTGCAATTCCAA 557854 33 100.0 34 ................................. CCCGCTTGGCGTGTCTATCTACGCAAGAGCAGTG 557921 33 100.0 34 ................................. ACCATCACCGAGACGGATTATATCGAGGAAATAG 557988 33 100.0 33 ................................. GCCCATCGATGTGTTTGTGATCGAATACCGCAT 558054 33 100.0 34 ................................. GAGATATGGCGGATAATGCTAACAAAATGGGCAC 558121 33 100.0 34 ................................. GCGATCAGCACCGGCGCTATATTGGTCGGATATA 558188 33 100.0 33 ................................. CTATATTCCAGTCCTTTTTACCCATTGTTAAAG 558254 33 100.0 33 ................................. TGAAGCCGTCAAGCAGCATCTCCAGGCGAAGTG 558320 33 100.0 34 ................................. TTCCAGAGGTGCTTACCAATGGTACCGCCGACAA 558387 33 100.0 33 ................................. TGCCGATGGCGCGCGTGCTGGTAAACCATATAC 558453 33 100.0 34 ................................. CGTAAGTATGCCTGTGTGGAGGACTCCGTTGCAG 558520 33 100.0 35 ................................. ATGTTCGGTGCGTTGAATATGGAGAAGTTGGTAAT 558588 33 100.0 34 ................................. TTTTTCCTGCTTGAATAAAGCGGCTTGCCCTTCC 558655 33 100.0 34 ................................. CTTAAAATAGGTGATATTTTACTACCGTTTGTGC 558722 33 100.0 36 ................................. TCAAAGCGTCGTGAGGCAGGAGTATGAGCGCACTGT 558791 33 100.0 36 ................................. TCAAAGCGTCGTGAGGCAGGAGTATGAGCGCACTGT 558860 33 100.0 36 ................................. TCAAAGCGTCGTGAGGCAGGAGTATGAGCGCACTGT 558929 33 100.0 33 ................................. CCCCTCGACACAGAATTTTACTTTGGGATTTAG 558995 33 100.0 33 ................................. CGTCCAGAAACTCCGTGAAAACAACCAGACTAT 559061 33 100.0 34 ................................. ATCAGTGGGAAGCCACTGATTAAGCCCCAAACTC 559128 33 100.0 33 ................................. GCCAGGGAATAGGTGGCGAACAGGTAGCGGCGG 559194 33 100.0 36 ................................. GCGGTGTAATTCCTTGGGACAAACGAAACGCGCGCC 559263 33 100.0 35 ................................. CGTGAGGGTGTCCAGAAGGTCCTCGGGGTCTTTAA 559331 33 100.0 35 ................................. CGCAAGGACGTCACCGATGACACCGTCGTGATCTT 559399 33 100.0 33 ................................. CAAAGATGGGGGCGTAGCGCTTAAGAGCGCCCA 559465 33 100.0 36 ................................. ATCCCGCACGAGATCGGGAAAGACCGTAACAGGCGA 559534 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ====================================== ================== 82 33 100.0 34 GTCGCACCCCTCACGGGGTGCGTGGATAGAAAT # Left flank : TTTTTATGGAAATAAAGGGGTTTAACGATGTTGGTTCTCATCACCTATGATGTCAGCACCGAGGACGCAGCAGGCCGTAAACGCCTGCGTCAGATTGCCAAACAATGTGTCAATTATGGCCAACGTGTTCAGAATTCGGTATTCGAATGTCTATTGGATGCTGCGCAATGCCGCTTGCTCCAATCCAAACTTTGTTCTATTATAGATACAGAACGAGACAGTTTAAGGTTTTACTATCTCGGAAATAAGTATGATACTAAAATTGAGCATTTTGGCGCCGGCAAAAGCTATCAGCCCGAGGGCCCGCTGATCATCTGAGCTGTGCGAAGCATAAGCAAACACCTTTTCACTGATGTTTCGCACTTATCTTTTTTATTAAAAAGCTATATTTTAAGAAATTTTATCTGTTTTAATCGTTTAGATGGGCTATTTTATTTGATATTCCCATTGATATTTGACAAAAGTGGCAAAAGATTAAAGCTATATCTGTCATTTTTGCG # Right flank : TACCAATGAAAGATATTATACATTTAAGCGCACAAGACGAAGAAAGTTCTCAAGTAGATCAAAGAGCGGGATTAAATAAGCCATTACAATCAAGAGCGGTGTTTTTTGATAATAAAAGAATACCTTATCAGAAGAAACCCTGTGAGAGCATTCAATTCTTTTGGAAAAAGCTAAGGGATACTGGTAGTGATGTCTCTTTTCCTGTTAAGATTTATGAGAACAAAGGGAGGGGCTTATTTAAGTTCTCTAAGTATACAGCAAAGGAGGATATTGAAAATGTATTATTCTCAATTATTGATGCTCAGTAATAGTTTTTCAGAGAATACACTTGATAATATGGATAAATACCTTTCAGGCTTGTCTCCCGCAGCTCAAAAGCTAATTACTATTTCAAAAGTGTCTGACGCTCTCCAACTTGATTATCAGACAACTTCAGAATCACCTAAAAAAGTGCTTGGATATAGGATTATTCAAGAAAAGATACGCATTAAAATGCCATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCACGGGGTGCGTGGATAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTCTCGCGGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //