Array 1 252176-251125 **** Predicted by CRISPRDetect 2.4 *** >NZ_DS996841.1 Holdemanella biformis DSM 3989 Scfld5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ========================================== ================== 252175 31 100.0 34 ............................... TCAATGCCACATTCTTCTGCCGTTTTCTTTTTGT 252110 31 100.0 37 ............................... TTATTTTCATACATACCTTCTTGGTTCTTACGCATAT 252042 31 100.0 36 ............................... ATGATCTCACCTGTTTGTTCGTTTTCTTTTTCCACA 251975 31 100.0 36 ............................... TGTCTGAATTGCTCAACGATGGATGTTCTAACAATA 251908 31 100.0 37 ............................... TTGTAATGTTTTCAAATCCTATCATTTTTCTTGTTTT 251840 31 100.0 40 ............................... TTTTTGGCTTTCGCACTCTTCGATTTTGTCAATATCTTCT 251769 31 100.0 35 ............................... TTTAATCTTTGCTGATCTGTAAGCGGCTTTTTATT 251703 31 100.0 37 ............................... TGTAAAAGTGCAATAAGCTGGTATATCCTCATATAAT 251635 31 96.8 36 ....A.......................... CAATAATTTATTTAATAAACTTATAAACTTATTTAT 251568 31 96.8 42 ....A.......................... TTGTTTCTCCCGTTTTGTATAATTACCTCTTTACCTACTCCT 251495 31 93.5 36 ....A....T..................... TTAGTAGACAAGAACACACATACATTCAATGCAAGT 251428 31 96.8 42 ....A.......................... TGAGCGCCATGTTTAGCGCTGTTACCAGTCCAGATCTGAATT 251355 31 93.5 36 ....A....T..................... ATCAACTCATCGATTCTTTCTTCAATCATTTTTCTT 251288 31 96.8 36 ....A.......................... TAATAATTGAAATGTTTTTTTTCTTTTTTCCATCTA 251221 31 93.5 35 ....A....T..................... TCATGATAGATTACATTCTTATCAATTGGGTTTGA 251155 31 77.4 0 ....A....T................TGAAT | ========== ====== ====== ====== =============================== ========================================== ================== 16 31 96.6 37 GTTGTATATCGTTCTTATAAAGGATTAACGC # Left flank : GTACATCGGTTATCTGAATACATTAAAGATAAGTCTATTACACTTGATTTTTTTGTGATGAAGTGGTGAGATTATGTACGTTATATGTGTGTATGATGTTAACGAAAAAACATGTGTTAAAGTAATGAAAATTTTAAGAAAATACCTGTTTCATATACAAAAGTCTGTTTTTGAAGGAACTTTAACACCCAAACAATTTAGTGTCTTAAAAGAAGAATTGCATAAAGTTACAAGTGATGAGGATTCAGTATTGTTTTATTTTTCATATAATGAAAAACAGATATATAAAGAAGGATTGAATAAAGTGAATGAATCTCTAAATATTTTGATTGATTGATCATTCGACCATCAGTATAAAATTCAACCAAAAAAGCCTATATTTCCATTAAAAAGTAAAAGTGGTCGAAAAAATTTGACATATTTTCCTAATGATTACTGAATTTTAGAGTATTTATAGATATTTTTGTAGTAAAATACTACGTATATGGCAAAAATTTGCT # Right flank : TGTGGTTGTTTAAGTGTTAAAAAAGAAGTATTGCTACTTCTTAGGTGTTATATTAACTACCACATACTCACATATACCCTCTGTTCTTATAGGAAAATCCCAACCAACAAGGCCTGAATTAATGATTTTTGTCCTGTGCTTGAATGTTTCTTTTCCGTAATTACCGGCAAAGTCAGGTTGTAAATGGTAAGAATAAGAGAGTGGAAACATTTGTCCGTTATAAGTGTGACCGCTGAGTTGAAGGTCAACGTTGTTTTTGATATTTTCCCTTGTTCCTTGTGGTTGATGGTCGAGGATGATGTTGTAGGTTTTAGTGGATAGATTGTAGTCTTTTGTTTTCTTGCGGTTTTTGTTTGTGTAATCTTTTCTGCCGATTAGAGTTATGTTATTAAAATGTACTTCTTGATCATTTAGAATGGTGATATTGTTTTTTGTGATTTTTTGATTGAGTTTATTTCTTGTGAATTTTATTTTGTCTTCGTGATTACCATATACAAAAT # Questionable array : NO Score: 2.92 # Score Detail : 1:0, 2:0, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.83, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTATATCGTTCTTATAAAGGATTAACGC # Alternate repeat : GTTGAATATCGTTCTTATAAAGGATTAACGC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.74%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 326284-325306 **** Predicted by CRISPRDetect 2.4 *** >NZ_DS996841.1 Holdemanella biformis DSM 3989 Scfld5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ======================================== ================== 326283 31 100.0 35 ............................... TCTATCGATAACATCTTTACAAGCAGTTGACACTG 326217 31 100.0 33 ............................... ATGCTTCCATCGAAATTCAAAACGTCTTCTACA 326153 31 100.0 39 ............................... ACATAAAGATCCTCTCCAAATACAGCGATTAATTCCTGC 326083 31 100.0 36 ............................... TAATGACAAAGATGGTCTTTTACTTTGTCTCCATCA 326016 31 100.0 38 ............................... TGCCCCCAGTTTTCCTTTCCTTCATAGTCATTGTCAAA 325947 31 100.0 35 ............................... AACTTAACATATGTCTTAATTTCATGGTTCCAAAG 325881 31 100.0 40 ............................... ACTATCTGTGCTTTTTCTGTTGTTTCATCTTGTATTCCGA 325810 31 93.5 38 ......................T..C..... TAAAGTAACCATAGGTGAATCTGTATCTACTTCCTCAT 325741 31 96.8 38 .........................C..... GAATTCATGAGCAAATTCAGTAATTGAATATTCTTTTC 325672 31 96.8 37 .........................C..... TCGCTAGCATCGTAATCATACTCTGATTTTTGAGAAG 325604 31 96.8 38 .........................C..... TTTGAATAGGCCCTTGAATTGGTTCATTTACATTATGA 325535 31 90.3 36 ..G..............A.......C..... TGTGGATTACGAATAAATTCTTCATAAATCCATCAT 325468 31 93.5 35 ..G......................C..... TGATGCTTTCTTTTCAATTCTAAATACGACATAAT 325402 31 87.1 36 ..G......................CA..G. TAGTAACTGTTACCAGCCATTGGATTAACTATATTT 325335 30 77.4 0 .....C....C.........-...G...ATT | ========== ====== ====== ====== =============================== ======================================== ================== 15 31 95.5 37 GGAAAATATGATACTTATAAAGGATTGACAC # Left flank : ATCCTGCAGACTTGTCAGAAGTTGAAACACCGGTTGAACAAAGACTTAAATACGTTAAGAACAACTTGAAATCAGATATTAAGCAACTACTAGATATTGGACTTACAGTTGAAGAATTAACATTAATGATTCAGCAAAATGCCAATATTATAGCAACACAATAATCTTTATATTTGGGGAAAGGGGCTTTGCGCCCTTTTGTACTTCTAACTTCTTCTTTTTATAAATTTTATTTTCAGATTAGGTACCTCCTTGTGATTACTTATATTTAAAGTGTAAACAATATTCTTATATAATTCAAACAAGAGTTTAAAATATTAATACATGGTTATACATTCACAACCAGAATATGACTAAATTTTCGACCATCCCCCAAATTCGAGCTGATTTAAGCATAAAAAATAGTCAAAAAACAGGAGATGGTCGAAAAATATATGCCAAAATCAGCTATTTTTCAACATTTTTATCAATCAAAGTCCAAAATGTGCTATATTTAGTAA # Right flank : TTGGAGGCTTGGCCTCCAATTTTTTATTATTGTTTCTACGTGAATTTATTTTAGTGATGAAATATATGCTGCTTTATGTGCAGAAGAGTGTTGTGTTGTAATGATGTCAGTAAGAACATGTGTTTATAGATTTTTTGTTAAATGAACAATTGTGATTGGAATTGAAAGTGCTATCTAGATTGATTGGATAGCGTTTTTTATTTGTCTAAATTCATGTTTTTTAAATTCTTGATTAATTCTATGAAATATCAAGACATATAAGGGTCGGAGGTAGAAAAAGAGGTGTGCTCATATAAAAAGTGTTCGTAAATAAATTTAAATAGTTGTTAAATACATTGAAATTGGATGTGAAAGGGTATCTGTGTTTGACGATATTAAACATCGTTGAAAACATGGATTCGATTTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 2.80 # Score Detail : 1:0, 2:0, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.76, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGAAAATATGATACTTATAAAGGATTGACAC # Alternate repeat : GGAAAATATGATACTTATAAAGGATCGACAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 3 375240-374315 **** Predicted by CRISPRDetect 2.4 *** >NZ_DS996841.1 Holdemanella biformis DSM 3989 Scfld5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ========================================= ================== 375239 31 100.0 38 ............................... ATGTTAGAATCAGAACAGCAAGGGTCATAATCAAACAA 375170 31 100.0 36 ............................... CCTCTAGAGCCTTCATTAATTTTGTTAAATCTAAAT 375103 31 100.0 40 ............................... TGCTTCTCCTTGAAAAAACAACTCTTTTAATGTTTGTAAT 375032 31 100.0 36 ............................... TAATTGGCACGTATCGCATCATAAAAAACAGAAAAA 374965 31 100.0 40 ............................... CTGCAAATACCTACAGCTACGATTCTCGGTTTGAACCCTA 374894 31 100.0 41 ............................... TTTCTCTTCGCCTTCTGGCGGTATATGCGATGAAAATCTAT 374822 31 100.0 36 ............................... TCTACAAAGTCTCCTTCCTTTAGGATACGTTCGTAT 374755 31 100.0 37 ............................... AAGTACTAAAGCATCATATTGTGTATCCCAAAGTTCT 374687 31 100.0 41 ............................... TTAAAAATATATTCTCCATGATAACAACCAAACTTAGCAAT 374615 31 100.0 38 ............................... CTCTTACCGCTTAGCGGCGTATCCATGAAAGTGGTTCA 374546 31 100.0 35 ............................... TCGAACAGTATAGAATCTATGATTTAATTGTAGGG 374480 31 96.8 38 ...G........................... TTGGATGTGATAATCTGATAAAATCATGCCCTCTATTG 374411 31 100.0 35 ............................... CAGCAGTTAATTCTGCCAAGCTCTATAGTTTTCCA 374345 31 83.9 0 ................G........T..TTT | ========== ====== ====== ====== =============================== ========================================= ================== 14 31 98.6 38 GGGAAATATGATACTTATAAAGGATCGACAC # Left flank : TTCAGACCCAGATAATCGTAGACCAACAAATTGGCAAGAACCAAAGGAGTCTTATGAAGACATTTATTATATGACTCAATTATTAATAAAACTCAGAAAAGAACATCCAGTATTAGCTAATGAAGGAAGCATTGAATGGATCCATCATAATGAATTATTAATTATGAAACGAGCTAATGAAAATGAAACACTCTATATCGTAGTCAACACAAAAGAGTATACTCTTAATACAATGTTGCCAATGCAAAATGAATTTATCAATATTATCAATAACGATACAATCCATCCAAATATAGAAATACAAAGACTTGGCTTTATGATTCTAAAACCAGTAAACCAATAACTAAAAGTCTACGTTTTTCGACCATCGACCTATTTTGAAGGATTTTGAGCACCAAAAACACCACAAAATACCGAGGTGGTCGAAAAAAATAGGCTAAATTCAGCCATTTTTCAATATTTTTATCAACTAAAGCCCAAAATGTGCTATATTTAGTAAG # Right flank : ATTGAATACTAGAAATAGTATTCTTTTTTTTATGTTCTTTTTAGATTTGTTGGTTAATTTATTGCTTTTTTTCTACATGTAATAGTAGTAAAGGAGTGATAAGTAATGGCTTATGTATTTCATAATCGAAATGAAAATAAAGATAAATATGATGTTTTAGTGAAAGAGGCTCGTAGTGTTCGTAATATGGGTATTTTGTTGACTTTGGGTTTGATTGTTTGTGTGATGATGGTTCCGTTTTCTGTAGTGTCTTTTTGTGTGATTGGTTTTGGTGTGTTGAGCTTAGTGTATTTAATGTATAAACATGGAAATGTGATGAATGAGGCTGGAATTTTGGCTAGTGGAGTAAGTGGAGAAAATAGGGTGTTTGATATGTTGCGTCAATTGCCAAATGAATATGTTGTGGCGACAAATGTTCCTGTTTCTTATGGTGAGAATCGTTCGGAGGTAGATGCTTTAGTGATGAGTCCTTATGGAATGTATGTTGTGGAAGTGAAGAA # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGGAAATATGATACTTATAAAGGATCGACAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 4 387662-387016 **** Predicted by CRISPRDetect 2.4 *** >NZ_DS996841.1 Holdemanella biformis DSM 3989 Scfld5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ======================================= ================== 387661 31 93.5 39 .A........................A.... GCTCCTATTTTTCAAGAGCCTCTCCGCAATGTTTGACAA 387591 31 96.8 35 .A............................. TTGAGCACCTTCCACTTTGTTTGTATTCAAACTAT 387525 31 100.0 39 ............................... TATCATGTCTGATAGACATACCTCTTGGATTCCCGAAAC 387455 31 100.0 38 ............................... TATCTTCGTTGATATCCAAAGCTTGCCAATAGCCGTTA 387386 31 100.0 36 ............................... TTTTTTGATGTATTCAAATACATCTTGCTGAGTTTT 387319 31 100.0 36 ............................... ACTTCTAGCGGCAAATATTTCTTCTAAAGTTCTTTC 387252 31 100.0 38 ............................... TTAGGAGAATTCCATAAATTATGTCCGTTTTCTAGTAA 387183 31 100.0 39 ............................... ATTAGCCCTAATGTACCAGCAACCAATGCCATCACCACG 387113 31 100.0 37 ............................... TGATATTCACCAGGCCCAAACGTTCCTTGCAATACCA 387045 30 83.9 0 ........................-.T.TGT | ========== ====== ====== ====== =============================== ======================================= ================== 10 31 97.4 38 GGGAACTATGATACTTATAAAGGATCGACAC # Left flank : TTGTTAGAAATCGCCAAGACAAATTATCAAACCAAATACGAGTTGTATCTAGATGCCAAGAAAGAAAAAGCAGATGCCGATGCCAACTACAATAAGGCTATGCAGGCATTAAATGACTACTTGAATTCACAATCAACCAAAGAAACTGAAGTTACAACCAACAAAGGTAATGTACATACAGGCGTTGATGCAAATGTGATGGGATCCATGTTAACAAGCATGGTAGCAGGCCTAGGAATTGTAGGCATCCTACACAAAAAAAGAAGGGAGGAGAAATAAATAAAGTAAATGAAATCAACAACTAAAGTAGGCATTTCCTGCTTTAGTTTATCTAATATTTTTAATCAATCTAATAAAATTTTCGACCATCGACCTATTTTGAAGTAAAAATTGCACAAAAAATACTCAAAAAAAGCGAGGTGGTCGAAAAATATATGCCAAAATCAGCTTTTTTCCAACATTTTTTAAAACAAAATCTCAAAATGTGCTATATTTAGTAA # Right flank : GTTTGGTGTAATATGCTTTTGTTTTGAATTATTGTTATTTGATTGGTTGAAGAGGACATCAGAGGATGTTCTTTTTAATTTATTTAGTTTTAGGTTAATTAATTTGAATTGTTTGACATATAAGAAGTGAAGGAGGGGATAAGATGTTTGTGAATGTTTCAAATCATCCTAGTGAATTGTGGTTAGATAAACAAAAAGAGTGTGCTTTGTGTTATGGAAGTATTGTAGATGTTGCTTTTCCTGCAATTCATAAGGATTATGATAGTAATAAGTATGATGAATTGGTTGAATTGTATTATGAAAGAATTATGGGTCTTTATCCGGATGTTGTGATGGTCCAAGGTGAGTTTGTCTTTACATATAGGTTAGTAGGTAAGCTGAAGGCTAGTGGTATTCGAGTTGTTTCAGCTCGTAGTGAGCGTGTGTGTCAGGAATTCAAGGATGAGAATAATGTGATCCATAAGCATAGTATTTTTGAGTTTATTGACTTTGTGGATTAT # Questionable array : NO Score: 3.13 # Score Detail : 1:0, 2:0, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGGAACTATGATACTTATAAAGGATCGACAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //