Array 1 182604-179954 **** Predicted by CRISPRDetect 2.4 *** >NZ_FBRA01000004.1 Klebsiella pneumoniae isolate 143500513, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 182603 29 100.0 32 ............................. GAGCAGGCACCCGCCGCAACGACGAAGAGCGC 182542 29 100.0 32 ............................. AAATCAGCCAGCACCACGATTCTGGGAAATTT 182481 29 100.0 32 ............................. ACAGGCTTACCCGTATTGAGACGGTTGCTGAA 182420 29 100.0 33 ............................. GAAACCCCATCAGATGACCCTCCCCATGTTGGC 182358 29 100.0 32 ............................. TTGCCTGGTCTGCTTGGTGATGATCCGTGGTA 182297 29 100.0 32 ............................. TACAGAACGACTGAGGCGGCGTGTATTGCATA 182236 29 100.0 32 ............................. GATCTTAACTCTATTGCCAATGGCGCAATTCA 182175 29 100.0 32 ............................. GGCGATGCGCGCTCTGCTGGCTATCGGTAAAA 182114 29 100.0 32 ............................. AATGCAGCAACCGGCAAATATATCGCCGGTAA 182053 29 100.0 32 ............................. GGGCTGCCGCACGCCTGGGACGAGTCGAGCCC 181992 29 100.0 32 ............................. CCGCAATAACAAAAATAAATGAGGGTTAAAGT 181931 29 100.0 32 ............................. GTAAATGGGAATGAGTAGAAGAGCGTCATTGG 181870 29 100.0 32 ............................. CCCCCGCGCACATGCTTAAACGCGCTATCACG 181809 29 100.0 32 ............................. GGCATCTGTTGTGTAATGTTGAGTTTTTTTCA 181748 29 100.0 32 ............................. CAGGTTAAACATGTAAAAAATGACCGTCGCCG 181687 29 100.0 32 ............................. CACATTGCCCGGTCTGAAAAGTATTTGAAAAT 181626 29 100.0 32 ............................. TCCGCACAGTCAAACGCTCCAGACACCAACCC 181565 29 100.0 32 ............................. CCGGAACACCACCAGTAACAGCTACTGTAGGC 181504 29 100.0 32 ............................. TGACCCTGTTGATTTTGTTCCAGGTAATACGT 181443 29 100.0 32 ............................. TTAACCTCGTCGTTCTGGTTTCCGCCCAGGAT 181382 29 100.0 32 ............................. GAACCTGAATTCGAAGGGTGGGTCATCCTTCC 181321 29 100.0 32 ............................. GGACCCCGAGCGACCCGGTCACCCTCCGACCT 181260 29 100.0 32 ............................. CCGTCGAACGGCGGTTATATCCATCTTGAGTC 181199 29 100.0 32 ............................. ACCGATCCCACAATTGCGGCGGTTGAGATTGA 181138 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 181077 29 100.0 32 ............................. CCGATTGTCTGGCGGTCGAGCGCCATTTGCTC 181016 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 180955 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 180894 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 180833 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 180772 29 100.0 32 ............................. CCCTCCGCTTTCAGGGTGTGGCTGATATCACC 180711 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 180650 29 96.6 32 .............A............... TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 180589 29 100.0 32 ............................. ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 180528 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 180467 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 180406 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 180345 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 180284 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 180223 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 180162 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 180101 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 180040 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 179982 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 44 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCCTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : GTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 27841-28775 **** Predicted by CRISPRDetect 2.4 *** >NZ_FBRA01000013.1 Klebsiella pneumoniae isolate 143500513, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 27841 29 93.1 32 ............TG............... TGGTGCTCTCAACCGTCACCCGCTGGCTGGAA 27902 29 93.1 32 ............TG............... TCGTGTTGTCCACGGTTACCCGCTGGCTGGAA 27963 29 100.0 32 ............................. TTACCAATGGGGAAAAATCTTCATTTGTAAAT 28024 29 100.0 25 ............................. AACATCAGTGGAAATCCACTGCGGC Deletion [28078] 28078 29 96.6 32 ......T...................... CGAAAACGGCAACCTTCATAAAAACGTCTTTT 28139 29 93.1 32 ............TG............... CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 28200 29 100.0 32 ............................. TGTGTGTTGGCGTTCGTTAAATATTGTTAGTA 28261 29 100.0 32 ............................. CAGGTTATACTGGCAAAACGTCGATGGCTCTC 28322 28 93.1 32 ..........-..T............... TAAATCAGCAAATATTGTTGTCTACCGTGTCG 28382 29 89.7 32 ............TC...........A... AGCAAATCGAAAATCCGGCTGTTTGAAAAATG 28443 29 100.0 32 ............................. TGAGGCTGCTGACGGAGAAATGGGACCTGTTC C [28448] 28505 29 96.6 32 ..............C.............. CCGACCCGGTGCCCAGGAGAACTGGCTGAATA 28566 29 93.1 31 .............G.A............. TTCCCTGCACTAAGACGCTGGTGGTCGCCAC 28626 29 93.1 32 ...C......................T.. CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC 28687 29 96.6 32 .............T............... GGCATGAGCGAGAACCACTGCGAGAGTGTGGT 28748 28 89.7 0 ..........A...........-.....A | ========== ====== ====== ====== ============================= ================================ ================== 16 29 95.5 32 GTATTCCCCCCGCATGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : ACATAGAAACCGCAATGGTGGGGCTTTTGTCATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCCTGGATAACCCACTTTCTGCCATCTTTTGTCTCAAAGGGTACTCCCACCGTGGCAGGTGGGAGGGGAATTTGAATTGACGCGATAGCGTTAAAGGAACATTTAGCCGCGCTGGTGCTGAATGTAGCGCTTTACGACTTCCAGCGGTGCTCCACCACATGACCCAACAAAGTAACTGCGTGACCAGAGAACAGGCTTACTGTACGCCTCCCGCAAATCCAGAAATTCATTCCGTAGCCGCCGACTTGTGACGGCTTTCAGGCTGTTAACCAGTTTTGACAGTTGCACAGTTGGTGGGTATTCGACCAGCATGTGAACAAACAGTTTTAAACAGAACCAAAGCAGACTGGCAAGGTTACAGCGCCAGCTTGCCCGTAAAGTGAAATTCAGTGCGAACTGGAAGAAGCAGAAAGCAAGAA # Questionable array : NO Score: 5.49 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //