Array 1 3587-5080 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZNE01000055.1 Gilliamella apicola strain A-1-24 NODE_55, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3587 29 100.0 32 ............................. CCCTCGGTTGAGGGCTTTTTTGTTTCCTATTT 3648 29 100.0 32 ............................. TAACTCTATTTTCTAATATATCTAGTTTAACC 3709 29 100.0 32 ............................. AATTGTCTTTGATGCTATTTATAAAAAATAAA 3770 29 96.6 33 ............................T GTTGGTGCACTTAAATAACCACAGCATCGACGA 3832 29 100.0 32 ............................. TTTGCTTTCTTTATCATAGTTACGACCCTGAA 3893 29 100.0 32 ............................. CAATCGTATGCGATCACGCATGGGTAACGGAT 3954 29 100.0 32 ............................. AGGAAATAATCATTATTCGGATATGACATCCT 4015 29 100.0 32 ............................. AGTTTAAACAATCTTTAGAAACTCATGAATAT 4076 29 100.0 32 ............................. TAACTAATGCGATAATTTCATCGTCTGTTAAA 4137 29 100.0 32 ............................. GATAATAAAAAATTATCAGAGCATGATAGAGA 4198 29 100.0 32 ............................. GATTGACGTAACGAATAGGGTTAACAAATTGC 4259 29 100.0 32 ............................. AAAGCCCTTAATTTTTTAATAAATGAAAAAGG 4320 29 100.0 32 ............................. GCGGACAATGACCCGGCGAATATAAGAAATAC 4381 29 100.0 32 ............................. GAGAGTAAATGCAACAAACTTCATAGTAAATC 4442 29 96.6 32 ............................A GTTTGTCCACCAACCCAGCTAATAGGGCGTAC 4503 29 100.0 32 ............................. CGCACACGTGAAATATTAGAGGTCTTTGATTG 4564 29 100.0 32 ............................. TCAATTTAACTAACATTTGATTGCACCCTCTT 4625 29 100.0 32 ............................. TCTTTTCGCATTATCATTCGCAGATGAGTTAA 4686 29 96.6 32 .............A............... GGTGGGCCGGAGCGTTTACCAGGCTCTCCACC 4747 29 96.6 32 .............A............... AATTAGAAAAAGAAATTGATGAGTTCAAAAGA 4808 29 96.6 32 .............A............... CACGCTTTAATGCGCAAGAATCGCCAGACGGC 4869 29 96.6 32 .............A............... GGGGCGTATGGCTTGGGAGATAACACCACAGG 4930 29 93.1 32 .............A..............A CCGCAAAGTCGGATAAAATTGGAACAGCATAC 4991 29 93.1 32 ............CA............... AGCCTATCGCTATATCCCTATATGAAATGCAA 5052 29 96.6 0 .............A............... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.5 32 ATGTTCCCTGTATGCACAGGGATAAACCG # Left flank : CAGTATAAAAATCAATGAATAATTCAAATTAACTTTATGTTTATAAAGAAAACATAATATTTGGTTAATATAAGCATTTGTTTTAATATCGAGTAAGAGATTCGAAATAACAGAGTTTACTTAATAGCTTTCACTTAAAAAATATATTGGAGTATTTAAAGATCGTTGAAATGATATTAACTAAAAACGAGTATATGAATCATAGATTATGAAAATTTGGTAACTAAGATATACAAACAAACCACTTTGAAAATAGAGTAATTTTGATAATAACAAACCACTAATAACATCTCAATAAAATCTACTATTTTTTTAACTAAATGAAAAATATAAACTTATCGGTAGAATTCCGTAGAATCAAATTTTAATTTCCATCAATTTTAATTACTTTAATAAAAACATAACGTTATAAATACTGATTTTGATAAAAAATAACCTAAAAAATCGGTAGAAATTTTGTAGTCAATATTTTAATTATAAAACAGTATGTTATAATTGGT # Right flank : GCTTATTTAGCAATATAATCAATGGGTCCATATTAGTTTTAGTCTGAATAACAACCGTTAAATCGTGTTAACAGCAATCAAACAGGGCGGTAAAACTGTTTACGTGAATGGGTTGATTTAAATAACTGTCCACAAAAAGGATAATACTATGTTTAAACGGCTTGGAATAATCAACAGAAAATCAGAGAGAGCTAGTGTTAATGTCTCATGGTAATGAGACAATTTTGTTAGTTGTAGAGACGTATTTATTTGAAGAGATAATTGCATCATGGGTCATAGCAACATTAATTACCATATCTATTTTTTGTTTATACGCAAAATATGTTAGTCCTGAAATTTGGAATTATATAGTCGCGTTTTTATTTGGATGATGTATGAATAAATCAAAAATATTAGGTGCCGCATTAATTGTCGTTATTTTTGTTCTAATTATTTATTTCGGTTACAACAATTATCAGGAAAAAATAGACTCAAAAACGATAAATTAGAATTAACCAATA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCTGTATGCACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTGTTCCCCGTATGCACGGGGATAAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 10337-11159 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZNE01000055.1 Gilliamella apicola strain A-1-24 NODE_55, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 10337 29 100.0 32 ............................. CGATGGTTCCACTCCGGTTTTGTTATCATGTA 10398 29 100.0 32 ............................. CGCACAACATATAATGATATTATTAAATTAAT 10459 29 100.0 32 ............................. GCAACTAAACATAACATTGACCCAAAATTGTT 10520 29 100.0 32 ............................. GAGATGACTAATGCAACTGACAGAACATTTTA 10581 29 100.0 32 ............................. ATTGAATATCTATCCAACGATAGTTTTATCAT 10642 29 100.0 32 ............................. CATATGTTGACTGTGTGGTTTACCGCCTACCG 10703 29 100.0 32 ............................. CAAAATTTAATTGGCACACTCAAAAAAATATT 10764 29 100.0 32 ............................. ATATTCAAATAAAAAAACATGCGTTTGACATG 10825 29 100.0 32 ............................. TCTTTGTATGTTATTAATTTACCCGTTGCTGT 10886 29 100.0 33 ............................. ATATTGTTACCACAATGAAATGCGCTGACGGGC 10948 29 100.0 32 ............................. TCATTGATTTTATTATTTCTATATGTAAATAC 11009 29 100.0 32 ............................. AACATAAATTCACAGGAATAGTAGTGAAAGAA 11070 29 100.0 32 ............................. TAAACCAAATTCGTGGGAATGTTCTATCAACA 11131 29 86.2 0 ............C..........T..T.A | ========== ====== ====== ====== ============================= ================================= ================== 14 29 99.0 32 ATGTTCCCTGTATACACAGGGATAAACCG # Left flank : AAAGATAAGTTAAATTATTAGGTCCTCTAAAAGATGAAATGTAAAGCTATTGGTTGTTGCACTCACGCATACTCATCAACTGGTTATTGCCATCGACATTTGTATTTAGTTAAAGCGAATCGAATTGTAAGTAAAGCTGGGTCAATAATGTTCCCTGTGCACATAGGCATAAACCGCGTTACAAATGAACCCGTAAAACTAACCGAATGTTTTCCCTGTATATACAGGAATAAACCAGCGATGCGTCAATTTACATGGCATTTTTTTGCTATTCAAAAATCATAATTCTAAATTTCATTGTTTACCATCTTTTTAATTATATGAAAAATATAAACTTATCGGTGGAATTCCGTAGACTCTAATTTTAATTTTCATCAATTTTAATTAATTGAATAAAAACATAGTGTTATAGATGATGATTTTAATAAAAAAGAGCCTAAAAAATCGGTAGAAATTTGGAAGTCAATATTTTAATTATAAAACAGTATGTTATAATTGGT # Right flank : ACAAATCCATCATAAACAGCCCTAGTGGCGGTTTTTCATTGCCCTTAATCTTTAAATAACATACCATTACCTAAAAAAGGAGATGGTATGAAAAGAATTGTATTACTAGGATTGGTTTGTTTTGCGTTGTCTGGTTGTGGTGATGATAGTGGCAGTAAAGTTACTAATGAGTTTTTGGTTGGTAAGTGGGAGTGTAAATTGGAAGATTACAGATCGAAAATGAAAAATGGAAAATTTACTGATTATGTTAGTGATGGGTTTAATATAATAAGGAAGGAAGAATTCAAAATAGAAAATAATAAACTGTATACTATAAGTAAAACTGAAGTGGATGGACATACTTTTTGGGAATCGAATGATTGGGAAGAAAGTGATAGAACTATTACTCATACGGGACAAATAGTAGAGAAAAAGGAAGATAATTTAACCGAAAAATCAACCAATTCCCTAATTAAAAAATCACATGATACTTATTTAATGATTGAGGAATATATTAAAAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCTGTATACACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: F [matched GTGTTCCCTATACACATAGGGATAAACCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 14497-15623 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZNE01000057.1 Gilliamella apicola strain A-1-24 NODE_57, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 14497 29 100.0 32 ............................. ATATCCGTGCACATACACCAACCTAGATTAAA 14558 29 100.0 32 ............................. CTGGGATCCTTACCTTGTGCCAGTAGCTTCTT 14619 29 96.6 32 ............................C ACAACCTGTTACGTATAATGTTGATTTAGTGC 14680 29 100.0 32 ............................. ACGTAATCGAACTGTACCAATCACAAAAGATC 14741 29 100.0 32 ............................. TTTCTGTATGATCAGTATCACGATTGAGATTG 14802 29 100.0 32 ............................. CTGTCGAACGCTACACATTGCAAAAATTAAAT 14863 29 100.0 32 ............................. GATGTTAGTATTACCAGTCATTATTGATCAAT 14924 29 100.0 32 ............................. GCAACATCGAGCACGAGGGCGAGACACAGCAA 14985 29 100.0 32 ............................. AATGCCCTGAATGCAAATTTATGAAGCCGATC 15046 29 100.0 32 ............................. TTCAATTTCTTTTTGATTATTATCATAGAAAT 15107 29 100.0 32 ............................. CTGGACATCGGCATGATTGAAATTATTCTACC 15168 29 100.0 32 ............................. GGCGTTAGAAAGCTATTACGTCTGGAAATGCC 15229 29 100.0 32 ............................. CGTGGGATGATAAAAACGGTTGTTGGCGAGAT 15290 29 100.0 32 ............................. GATTAAAACACGCTCGGAACATTTGAAAGATG 15351 29 100.0 32 ............................. TTTCTGTATGATCAGTATCACGATTGAGATTG 15412 29 100.0 32 ............................. CTGTCGAACGCTACACATTGCAAAAATTAAAT 15473 29 100.0 32 ............................. GATGTTAGTATTACCAGTCATTATTGATCAAT 15534 29 100.0 32 ............................. CGGTCCAACATTAGAGACCGTGTTGGTTTTGT 15595 29 89.7 0 .......T..................TT. | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.3 32 ATGTTCCCTGTATGCACAGGGATAAACCG # Left flank : GTATAAAAATCAATAAATAATTCAAATTAACTTTATGTTTATAAAGAAAACATAATATTTGGTCAATATAAGCATTTACTTTTAAAATTAAGTAATAGATTTGCAATAAAAGCCTTACATAATGGTTTTTACTTAAAAAAATATAGTTGATTACTTTAAGATTGCCGAAATGATATTAACTAAAAACGAGTATATAAATCATAGATTATGAAAAATTTTGTAACTAAGTTACACAAACAAATCACTCTAAAAATAGAGTAATTTTGATAACAATGAAGCACTAATAACATCTCAATAAAACTTACTATTTTTTTAACCAAATGAAAAATATAAACTTATTGGTAGAATCCCGTAGAATCTAATTTTAATTTCCATTAATTTTAATTAATCAAATAAAAACATATTGTTATAGATTGTGATTTTAATGAAAAATATTCTAAAAAATCGGTAGAAATTTGACAGCCAATATTTTAATTATAAAACAGTATGTTATAATTGGT # Right flank : GGATTGGGTGCATCGATTCTCTCGATGTTATTGTATATTCCCTGTATATATATGAAAAATTAGAAGGTATTGTTATAAAAAATAAACGAGCAAAGTTGTTTTTAAAGACAATATCTGATTTATTAAGATTAGCTGTAAATGTTTTTCTGAAACACAATAAAACTTAATCTAATATTAACCAACGATTGTAAGGAATTGATATGAAAAAGATACTAATGTTAATTACCGCTCTATTTTTATTCGGATGTGACAGGACCTATACTGTGGAAGAGTTCAAAAATGATGAAAAACTAACAGATGAATACCAAAAAAAATGTCAAAACGGTGAAATTGATGGTGATAGTTTAAATTGTCAAAACTCTCGCAAAGCAGTAGTTGTACGAAATAAAGTTAGTAATGCAAGTTGGAATTAAAGTCATTTTAAAAGTGGCTTTTAAAACTTTATCTGTGGTAAGTTTTTAGACTTAAATTGATTGTTATTTATTTGAAACTTATCACTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCTGTATGCACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTGTTCCCCGTATGCACGGGGATAAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3600-4300 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZNE01000090.1 Gilliamella apicola strain A-1-24 NODE_90, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3600 29 93.1 32 ..A..........G............... TCCTAACCGTTAGGGAAAATTTTGTAAACGCA 3661 29 93.1 32 G............G............... TAATTGGTTTTTAAATGGCGAGCTTTGAATGT 3722 29 93.1 32 G............G............... ATATTGTGTCGATATTAAAAGCAAAGCCAAGC 3783 29 96.6 33 .............G............... CAAAAAGCGACGATATATACTTAAACCTTTAGC 3845 29 93.1 32 .............GT.............. AGGATCCTCACCTAGCGCATATGTCCTCATAA 3906 29 96.6 32 .............G............... AGTTCGATCAACCGACTAATGATATTACGCGC 3967 29 96.6 32 .............G............... AAAATCACGAAGTTTTACCAGTATCAGAACAA 4028 29 100.0 32 ............................. GAAAATTCAAAACTTGGATTAAACATTACATT 4089 29 100.0 32 ............................. CATTGGCGGCGTTGATTTAGATACAAATAAAA 4150 29 100.0 32 ............................. CGTCTATCCTCAATATTCTAGTGGTGGTTTTA 4211 29 100.0 32 ............................. CCACCAGTCGTCCTCACGCTCATAGTCTGGTA 4272 29 89.7 0 .............G......A.......A | ========== ====== ====== ====== ============================= ================================= ================== 12 29 96.0 32 ATGTTCCCTGTATACACAGGGATAAACCG # Left flank : TATAAAAATCAATAAATAATTTAAATTAACTTTATGTTTATAAAGGAAATATAAAACATTGAGTAACTAACAGTGTTTACTTGTAATGTTGATTAATAGATTTGAAATAACAAAGCTTAAATAATGGTTTTTACTTAAAAAAAATAGTTGATTACTTTAAGTTTGCTGAAATGATATTAACTAAAAACGAGTATATGAATCCTAGATTAGGAAAATTTGGTAACTAAGATATACAAACAAACCACTTTAAAAAATAGAGTAATTTTGATAACAACAAAGCACTAATAGCTTCTCAATAAAACTTACCATTATTTTAACCAAATGAAAAATATAAAATTATCGGTAGAATTCCGTAGAATCTAATTTTAATTTTCATCAATTTTAATTAATTAAATAAAAACATAGTGTTATAAATACAGATTTTGGTAAAAAATAGCCTAAAAAATCGGTAGAAATTTATCAGTCAATATTTTAATTATAAAACAGTATGTTATAATAGG # Right flank : AAACGGTCAACATATTCAGACGTTTTAATCATATGCACAGGGATAAAATACAAATCCACTACCGCCTTTGTAGCGGTTTTTAATTGACCTAATGGTTAAATAGCATACCATTACCGAAATTTAATTATTAAGGGAATGGTATGAAAAAGATTAAAAAACTTTTATGAAGCTTTTTTGTTTTCAAGATAAAATTTAATTGCATCAATAATCAGTTGCGCTTGAGGTACCTTTAATTGATTGCTTGCTTCCTCAATTAATGCAATATCATCTACATGAAGCTTAAAACCTTTTGTTTTCACACCTCGTTTTTCGTCACTTTTTTTTTGAATTACAGCCCTTGTTAATGCCATATAATCACCATGATTTTTAAATAAAAATTGTTATATTTAAGGCCGCAGGTGAGGACTGCAACCTTCAACCTTTGAAGCAGTTTTAGTAAACTGTACAACTTCAGATTATTAAAACTACGAGAATTAAGATTCTGTTCTTCTTGTTTCTCC # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.54, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCTGTATACACAGGGATAAACCG # Alternate repeat : ATGTTCCCTGTATGCACAGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: F [matched GTGTTCCCTATACACATAGGGATAAACCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [3-3] Score: 0/0.41 # AT richness analysis in flanks prediction: F [80.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 20087-19082 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZNE01000022.1 Gilliamella apicola strain A-1-24 NODE_22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 20086 29 100.0 32 ............................. CGAATAGGTAGGTGATATGACAGAACACGCAT 20025 29 100.0 32 ............................. CCTTGACTCACCTAGTAGACATGGTCTAAATG 19964 29 100.0 32 ............................. TAATGAGTTACGCTCATATGTGCTTTGGGCTA 19903 29 100.0 32 ............................. GGTTTAGTCGTCTTGAATCGTGGTGGGTCGCC 19842 29 100.0 32 ............................. CATTTATGAACCGTTTCCACTCCCTCTAAATA 19781 29 100.0 32 ............................. AAATGTTAACAATTGTCTCTTTTGTTTCTTAG 19720 29 100.0 32 ............................. GGTTCACATTGGATTTAGTCCGAGCAATAACC 19659 29 100.0 32 ............................. GGTTCACATTGGATTTAGTCCGAGCAATAACC 19598 29 100.0 32 ............................. GCTGATAAAAAAAGCCAAGGGGGATAACTAAT 19537 29 100.0 32 ............................. CGTTATGTTGAATTTGTAGGCTGTATACTGTT 19476 29 100.0 32 ............................. GGTTTTGGATACTGATAAACAGCAACAGCACT 19415 29 100.0 32 ............................. AAATTGAGCGAGTACTGCGCGACGTTGGACTC 19354 29 100.0 32 ............................. GGTACTGCAGATTGGTGGAAGAAACAATCAGA 19293 29 100.0 32 ............................. CTTAGAGCTATGGCTAACAGATTATTTTGAGG 19232 29 100.0 32 ............................. TATGTTCACTAAAGGATTTGAAGGTGAAATAT 19171 29 96.6 32 ............T................ TCCTGTAAAATATTCGTACACAGTTAATGGAG 19110 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.6 32 ATGTTCCCTGTACACACAGGGATAAACCG # Left flank : AAGATATATGGTGGAGTTTATAACCTGTTTGACAAAGATGTCTCAAATGCTGACTTCGGTAAAACTTTAGAAGGTCGACGTTACTTCATAGGTACCGAGATTAACTTCTAAATTAACTAATAAGTATTTTCCTATAAAAAAGATGACTGTTAAAACAGTCATCTTTTTCTATTTATACTAATATAGATTATTTATAATCCAAAAATAGAAATACCTTTTTACCCGCCGATAAAATAACTTAGTGCAATGTCAACATAGTAATTTTTTGCTATTTAATAAATCCTAATTATACATTTTAATGTATTATTGTTTTTAATATCATGAAAAATAACAATTTATTGGTAGAATCCTATGAATATTAATTTTACCTACCGTTAATTTAAATTAACTCAATAAAAACATAGTGTTATAAATACTAATTTTATTACAAATTAACCCAAAAAATCGGTAGAAATTTGACAGTCAATATTTTAATTATAAAACAGTATGTTATAATTGGT # Right flank : TTCTATAAAGCTGGTTAGTCAGACTAAGAACGAAGAATTGGCTAAAATAATTCACGAAATGGATTACATCCCGTGGACAAATGTGTCAACTCCAAGAGGTGTTTATGCTCATGAGATGGGGCACGTGTTACATTATCAATATAAAGAAGATATGGATGATATTATCAAAAAATCATAGGGCGAGCTTGGGCATATGCAATTAGTAATTATGCTCTACATAACAAACGAGAATTTGTTGCTGAAGCGTTTTCGTTGTATATTGAAAATCACATAGAAGCTAAAAAGAGACTTTCTCCAGAATTATTTAAACTTTTCGAATCACTAGATAAGGATATTAAATGAATAAGTTTGATTTATTAGTTGAGCAAGCAACTGAACTGATTAACACCGAGCCACTTCCTGATGATGCAGAGGAACAATTGCAAAAAATTATCGACCAAGCTGACGACAAAACGGAAAGACACATGTTAGGTAGGCTTGCTGAAGCTCTGTTTGTTATA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCTGTACACACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTGTTCCCTATACACATAGGGATAAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [68.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 99593-99014 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZNE01000002.1 Gilliamella apicola strain A-1-24 NODE_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 99592 29 100.0 32 ............................. TCTAGACTATATCTTATATAAAGGATACCCCT 99531 29 100.0 33 ............................. CTTGCGCTATGTTGCGGGTCGCCGTCGTCGCCC 99469 29 100.0 32 ............................. GCGATTGATACCGTTTCTGATAACATGATTCA 99408 29 100.0 32 ............................. CAATTCAAATAATTATAGCAGATACGCCCGCC 99347 29 100.0 32 ............................. GGTGGCGGTTGTACTGTATTTGAAAGGCGCAA 99286 29 100.0 32 ............................. GCGGACGATTATAGCGGCGTAGACATGCCGTT 99225 29 100.0 32 ............................. TCCATGCAGAACAACCTATTGAAATTAAAAAA 99164 29 100.0 32 ............................. GCGTTTTCTCGTTTCTCCACGGACCAGGCGAA 99103 29 100.0 32 ............................. TTTCCGAAATGGCATGGCGTAAACTTACACCT 99042 29 79.3 0 ............C..........TTTT.T | ========== ====== ====== ====== ============================= ================================= ================== 10 29 97.9 32 ATGTTCCCTGTATACACAGGGATAAACCG # Left flank : AAATGGTACTAACTAAAAATCGGTGTTTAAGTCTAATTTATGTTAATTTTGTAACCGAACCACATAAGCAACCAATTCTAAAAATAGAGTGATTTTGATAACAACAAAGCATTAAAAACACCTCAAAAAAATCATATTAAAAACATTGAAAAGTTGGCGGAAATTTCAGCAAATGATTTTAGTTAATAAACAATAAGTTATAATAAGGACGTTCCCTGTATACATATAGATAAACCGTCGATGTATTAATATTGCATATCATTTTTTTGCTATTCAAAAATCGCAATTATGTATTTCATTGTTTACTTTTTTTTAATTACATGAAAAATATAAACTTATCGGTAGAATCCCGTAGAATCTAATTTTAACTTCTATTAATTTTAATTAATCAAATAAAAACATAGTGTTATATATTATGATTTTAATGAAAAATATCCCAAAAAATCGGTAGAAATTTGACAGTCAATATTTTAATTATAAAACAGTATGTTATAATTGGT # Right flank : TTTATGTAAGATTTTGCTAATTTTTGTCAAAAAGTTTCAGATTATGCCTATGTTTCAGTATAAAAACATCGATAATTAATTTAGTTTAATGGTTAATTTTTATACAAGCCAACGTATTATAAAAATGCATATCATTTAATGTGTTAAGGCATTACTATTGTAAAGACAATGGTGAAAGTAACGATCTGTTAGTTCTTGATGTTCATTAGTTATCTTCGTACAATAAAAAAAATTTTTATTTTGGTTTGTTATGCAATTACATTTAGTGGTTAATACGTTTGGTTCTGATTTGCAGCGTCGTTATGGAGAAAAGATCTATAAACTGACGTTACATGGTGGATTTAGTTGTCCAAATCGTGATGGTACTCTTGGTGTTGGTGGTTGCACTTTTTGTAATGTTGCGTCAATTATCGATGAATCTATCCAAGTCAAATCTATTTCTGAACAGCTTGCAACCCAAGCACATCAAATGAAAAAATCAAAGCGTTATCTTGCCTACT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCTGTATACACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: R [matched GTGTTCCCTATACACATAGGGATAAACCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 103317-103044 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZNE01000002.1 Gilliamella apicola strain A-1-24 NODE_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 103316 29 100.0 32 ............................. CAAAAATTAATAACAAAAATGTAGCATTTTTT 103255 29 100.0 32 ............................. TCTGATTTATTCTGCATAAGTTCCCTAAATGT 103194 29 100.0 32 ............................. GAAATTAAATTATCGTTCAACGGTACAGACGT 103133 29 96.6 32 ..............C.............. GCAGATGATAAACGTTTAAAACGATTTGAACG 103072 29 82.8 0 A.............C........T..T.A | ========== ====== ====== ====== ============================= ================================ ================== 5 29 95.9 32 GTGTTCCCTGTATATACAGGGATAAACCG # Left flank : GCCCAAAGTACTGTGGATAATTCATCATCAGTCACTTGCCCAGCAGGGAATCCACCACCTGGCGTTGATACGCGTTTTTTAAGACTTTCAAACAGACTCATGCCATCTTTCATTTGCGGTGTCGGTAAATTAATATCGGCATAACAGAATGGTAAACAAAACAATGATAAAAATAGAATGGAAACGGTCTTCCGTAAACCCCAAGGCATAACATACTCCTGAACTTTCGGTAATAGCGTGGTGATATCTTATTGCTAATGATCACAATTATCAATATCAAATAATAATAATTATCATTTTTAAGCTAAATTAAAATTATTAAAATAATCAATATAGTTATTGTTAGCGACCGATTCGCTAATATCAGCTTTATAACATTAATTATGCTGTTAATAAAAATATCGGTTAAATCAAAATGATTTGATTAAAAAACAACCTAAAAAGTTGGTAAAAATTTTAATGCCACTATTTTAATTATAAAACAAACAGTTATAATTAGA # Right flank : ATAGTAGTCATAAATTTTTCCTACAGTGCTACAATTGGTTGGTATTTATAAACAAAATTTAGCCACGGTTATCGACCTGTGGAATGATTTGCGAGAAAAAACAAAATCACCTGATAAAAAGCAACTATACTCTATTACCATTACAAAATTGCAAGGCACGCAAAGGTGGGCAGTCAAGGTCTTAACGATTCAGATACCTGCTCATAACCAAATATCTATTTACACTCATTAACACAAAAAATCAGATTAATAGAGCTATGTTGTATAAACTATATACATATTCACAATAGATATAAAGACAATGTGAGGATGTAGTATGACCAAGCAAGTAGCTGTTTTAGGAGATATGACCAATTATGGTGGTAGGATTATCACAGCGTCAGGGAATGGCTATTGTGGTATGGATGGTGTTGCTCTATTAGGTGACTTGGTATCCTGCCCTAAATGTAGCAGTACTGGCAGAATCATTGAGGGAGCAAACAATTTTATTATCGATGGTA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATATACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: R [matched GAGTTCCCTGTAGGTACAGGGATATACCG with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 28823-29581 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZNE01000024.1 Gilliamella apicola strain A-1-24 NODE_24, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ==================================== ================== 28823 26 100.0 35 .......................... CCATCAAAGATTGGTAATTTATACCGTGTTTCCTC 28884 26 100.0 35 .......................... CCGTGATTTTTAGATGATTTAAAGAGAGCCGACAA 28945 26 100.0 35 .......................... CCGAGATCTAAATATTTTATCAAATCGGTATCAGG 29006 26 100.0 35 .......................... CCGCGAAATAATTTACCTATTGCAGTCAGGGAAAT 29067 26 100.0 35 .......................... CCGAGAAGCTAAACGAAATTTTGGACAATCATGCT 29128 26 100.0 35 .......................... CCGAGGTCCAGGCACAGACCAATTATTTAGGTCGC 29189 26 100.0 35 .......................... CCGTCTGTTCTAGACTGTCTTTCTTTTTGATAATT 29250 26 100.0 35 .......................... CCGCGTACAGCAAATATTAGATGCCTTACCCAACG 29311 26 100.0 35 .......................... CCGGACAAACTGGGCGTTATCCGCTAAATTACCCA 29372 26 100.0 35 .......................... CCGATAAAACATTATTCCAGAGTGCATTTATCCTG 29433 26 100.0 36 .......................... CCGCACTAAATTTATTAACTCAAATACACCAACATT 29495 26 100.0 35 .......................... CCGGGATTTACCAAACGAGGGTACTCGTCGTGTTA 29556 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== ==================================== ================== 13 26 100.0 35 GTGTTCCCTGTATACACAGGGATAAA # Left flank : GCTTATTGAAGAAGTTTTGTCCGCTGGTGGTATCGAACCGCCTCTACCACATGATGATGCCCAACCACCAGCTATCCCAGAACCTCAATCTTTAGCCGATAGTGGCTTTAGGAGTCGCTAATATGAGTATGTGTGTTGTGGTAACTGAAAATGTTCCACCTCGATTACGTGGTCGTTTAGCAATTTGGTTACTTGAAATTAGAGCCGGAGTTTATATCGGTGACATATCAAAACCAATAAGAGAAATGATATGGCAACAAATTGTTAAACTTGCAGAAGAAGGCAATGTAGTCCTTGCTTGGGCGACTAATACAGAATCAGGATTTGACTTCCAAACTTATGGCGCTAATAGAAGGGTTCCGGTAGATTTAGATGGACTAAGATTAGTCTCTTTTTTACCTATTGAAAATCAATAGGTTAACGTTCTTTAAAAAATTAAAAAAATTGGTAGATTTTTGGGTCGCCAATAAATCTAAATAAAACAATTATATATATTTAGA # Right flank : ATCAGCTTTTACTCGTTTTTTATCTAACTAAAATCCTTTGTTGGATAAGTTATTGCTAATTTGTTCTAAGTCAGAATGTTCAGTTTTTTCTGAAACATTAAATAATTGAGCAAAATATTATACAGTTTTGTATCCATTTTGTTTTATTAGCGGTTTATCTAAAAAAGCTTGTCTTTCTGTTAGTATTGGATACCTTCTTGTTCAATAACAACACAATGATTTGATTATAATTAGTTAAAATAGTTTTTATATCACAAAGATCTTCAATAACTTGTTGCAATGATGGTATTGGAAAACACAATAAGGTATAAAATTAGATTTAATTTTTGTCTAATATTTTTATACTTATTGATAATTTATTATAGGTAATAATAAGTTTTTGAGATTATTTGCCTTAAAAGCATGGATTATGGTAGATTTTTCTTATTTATTATTGATATTAAAATAGAAAATATGTTAATACATATCAAGTTATACTCTTTCTTAAAGAAGACGATTAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //