Array 1 555930-557258 **** Predicted by CRISPRDetect 2.4 *** >NC_018591.1 Listeria monocytogenes serotype 7 str. SLCC2482 chromosome NC_018591.1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 555930 29 100.0 37 ............................. CAATGCTTAAACCGAGAGCATCAAATTGTTCCCATGC 555996 29 100.0 36 ............................. ATTACAGTACAAGCAAGGGTTATTGAGTTAAATATT 556061 29 100.0 35 ............................. ATTAATGATAAGAGCGGAAAGAAAACTTTCAAGGG 556125 29 100.0 37 ............................. TCCCCCTTAAGATACAAACTCGATTTGACAGGTGCAG 556191 29 100.0 36 ............................. TCGTTTATGACCTTATGAAAGAGTTAACACCTCGAC ACT [556203] 556259 29 100.0 36 ............................. CTTCCTACTTTTTGACATAAAAAATAAGCCGAGTTG 556324 29 100.0 36 ............................. AAGTTCAAAACCTCCCACACCCGCTATGAATAAATT 556389 29 100.0 37 ............................. TTCGTAATTTTACGATTATACTTTTTAGTCAAATTAC 556455 29 100.0 35 ............................. GTAACAAGTAGTGTTATACCTGCAACAATACCAGT 556519 29 100.0 36 ............................. TGGAAATGGGAAGAAAGAAATGCACTGATTGTAGAG 556584 29 100.0 36 ............................. GTCCACATCGACAATAAAAAACACATTGTATCACTT 556649 29 100.0 36 ............................. CTGGTTACTCAACTGGCGACAGTAATACACCTCAAT 556714 29 100.0 34 ............................. TTTGGATAGGTTGTTTCTGATAAATAGGTTCACG 556777 29 100.0 34 ............................. AGAAAAAAAACATCTTTCCAATTTGTTGTTTTGC 556840 29 100.0 37 ............................. ACAAGTGCTAGAACAGAAGTTATAATTTGAACATTAC 556906 29 100.0 34 ............................. AGAAGCGTTAGCGGCATTGTTCGAAAGTAATTTA 556969 29 100.0 36 ............................. TATAAAATATTGCCCAATGTGCGGAAGGAGTTTGGA 557034 29 100.0 37 ............................. AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG 557100 29 100.0 36 ............................. GTGTAATTCTTAATTCCGTATTGATTCGCTAGTTTT 557165 29 100.0 35 ............................. TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT 557229 29 93.1 0 .......................A....C | C [557252] ========== ====== ====== ====== ============================= ===================================== ================== 21 29 99.7 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : CGTCTTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACTCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTCTCCGCCATTCCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGTGTCTGTACTTTCTTATTCGCAAGTAGTTCTTTCTCCACACCAAACGTCTTGGCTGCAAGGTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTCCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [12-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 2663408-2660727 **** Predicted by CRISPRDetect 2.4 *** >NC_018591.1 Listeria monocytogenes serotype 7 str. SLCC2482 chromosome NC_018591.1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 2663407 36 100.0 30 .................................... GCAATAGACCAGTTAGGTGTCACAGGTGCG 2663341 36 100.0 30 .................................... GATAGTAGTATAATAACTGTGCTAATATGG 2663275 36 100.0 30 .................................... TTCGTACCATAGTATACACATGCAGGGGCG 2663209 36 100.0 30 .................................... CATATAGATGTTTCCTTTCTACTCGTATAT 2663143 36 100.0 30 .................................... AAATATTATTCAATGCTGTAACTGTAAAAG 2663077 36 100.0 30 .................................... TACTTTTATTGTCTGCTAAGAATACTACTA 2663011 36 100.0 30 .................................... ATTGTACAAATTCCAAGTAACTCATCATTA 2662945 36 100.0 30 .................................... TTTTTCACGTTTGTACTGTCTCTCCTCGTA 2662879 36 100.0 30 .................................... TAACTTTAGATACTGCTAAAGAATTAGCAA 2662813 36 100.0 30 .................................... TGTCTGAATGTAGTTAATATCTTCAACTTG 2662747 36 100.0 30 .................................... CTTCAGTTTCACCTGTGAATACGCCGTTTA 2662681 36 100.0 30 .................................... GCGCTTCAGTTTCAGCATTGGTCTTCTTAG 2662615 36 100.0 31 .................................... TCTCTTGCATTTGGTTCTGAATAATCTCGTA 2662548 36 100.0 30 .................................... AGAGCAATGTAGTCATTCAGCCAATGCCCT 2662482 36 100.0 30 .................................... ATATGGGGGCTTATTGTATGGCTAATATAC 2662416 36 100.0 30 .................................... ACGGGGCATTTAATGTTGGCAAGCGCAATT 2662350 36 100.0 30 .................................... TCCTCAGATAAGGTTTAGTACGCAAGACTC 2662284 36 100.0 30 .................................... TCCACTTCGACGCTGGACGGGCTCTCCTCA 2662218 36 100.0 30 .................................... CAATGCTTGGGGCTATGATGGCATGGATAA 2662152 36 100.0 30 .................................... CTCTTTTCGATATTCCGGAAGAGGTACTCC 2662086 36 100.0 30 .................................... CTTTTGTGTCTTCGGTAGCTTTGTCCATTA 2662020 36 100.0 30 .................................... CCAGAGTCGCTTTTTCTTCCGGCCAGTCTG 2661954 36 100.0 30 .................................... GTGTGTTATCTATTTGTAGCGTGGGTGTAT 2661888 36 100.0 30 .................................... ATATACAATGTCTAAGCTTAATCTTTCGGT 2661822 36 100.0 30 .................................... GAAATAATATTGATAATATCGCTCTTGCTA 2661756 36 100.0 30 .................................... AGTATTTATTATCTCTATTACTTTTGTATA 2661690 36 100.0 30 .................................... CGTATTCAAAAGTATATCCGCTAGCCTCAA 2661624 36 100.0 30 .................................... TAGGTTTAGGGAGTAAATTAGCTCCTTTGG 2661558 36 100.0 30 .................................... GGTAAAACAAGCATCGGCGAAGCAGTAACA 2661492 36 100.0 30 .................................... TCCTAAATCTGAAAACAAAAACTACGAGTT 2661426 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 2661360 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 2661294 36 100.0 30 .................................... AAAGCAATAAATCAGATCATAAAGGAGCCT 2661228 36 100.0 30 .................................... CGACGGAAAAATTAGACGACGCTAATGTGC 2661162 36 100.0 30 .................................... GGGCAACGATATTTGTAGATAACAGGGAGT 2661096 36 100.0 30 .................................... TACGATGTTAAGCGGTGGAGTAGATCAGTA 2661030 36 100.0 31 .................................... TATAGTCTGTTTTTTCGTAAGTGAGCAGCGC 2660963 36 100.0 30 .................................... TTGGGCAAAATGACCGTAATAAATCCATTC 2660897 36 100.0 30 .................................... TTAGCACTTATATAGAAGCCCCGCCCCTAC 2660831 36 100.0 30 .................................... AGTGATGGGGAAGAGATTGAACTTATGTTT 2660765 36 86.1 0 .............A.....C.....A.A.......G | C,A,T [2660730,2660733,2660738] ========== ====== ====== ====== ==================================== =============================== ================== 41 36 99.7 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACAGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : ATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATGTAAGTAAAGAGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAGAAATGAAAACCGATATAACTTTTAGCACCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //