Array 1 226356-223051 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGGLC010000001.1 Halolamina salifodinae strain DSM 26232 Ga0451177_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 226355 30 100.0 35 .............................. GTCTGGCAACCTCGTTGGGGCGTTCTATCTCGACG 226290 30 100.0 36 .............................. GCTTCGAGCATCGACGCACTCCGTATCGACAGAGTC 226224 30 100.0 34 .............................. CCGCAGTCTGGGCAAGTGTATGCGTCGCCACCTG 226160 30 100.0 36 .............................. AAAGCCAGGCTGCATCTGGTGCGTTTTCCAGTCTCT 226094 30 100.0 36 .............................. GTCCATCTGCCGCAGTTCGGTGATGGTGCGCTCCTC 226028 30 100.0 35 .............................. CCCTTGATCGTGGTCGGGGCGTTCTCGCTGGCTTC 225963 30 100.0 36 .............................. CCGCTACCGTCAGTCGACCACGAGGAAATGTATCCG 225897 30 100.0 37 .............................. GTGCATACGCGGGGCGTCGGGAGCGCAGCGGTTAGGC 225830 30 100.0 37 .............................. TTCTCGTCCCTACGAGAACCATGTCGACCAAATCGCC 225763 30 100.0 36 .............................. GACCGGATCGTCGAGTCGCTCGCCTCGCCCTCCGTC 225697 30 100.0 36 .............................. GAGCGTCGCCTCCCTGGAAGTCAGCAGCGGCGTGGA 225631 30 100.0 36 .............................. CCTCGTCTATGTCCACGCCGGTCAGGGCGGTGACTC 225565 30 100.0 36 .............................. GATCGGCGTCCGGTAGCGGTAGTCCGCAGCGTTCGA 225499 30 100.0 36 .............................. CGCCGGGGAGTCGCCCGTCTCGGGGTGTTCCTCGGT 225433 30 100.0 34 .............................. TCGCCCACGACGAGGAGGCCGACACCTACACGGT 225369 30 100.0 36 .............................. TCCTCGAGCTCGCTCTCGAGGGAGTCGATCGTCTCG 225303 30 100.0 35 .............................. AACGGCGTCCAGCTGACGACCGACATCATCGCGCA 225238 30 100.0 37 .............................. AGGTAGTGCCTCGATCCGAACGCATCGATCCTGATCC 225171 30 100.0 36 .............................. GGCTGACGAATCGCATCACGAGACTGCTCTCCCGGA 225105 30 100.0 35 .............................. GGATAGAGGGGTGGGGTGACAGCCCCATTCGCGCC 225040 30 100.0 35 .............................. ACTTGCTTGCGCGTGTTGGCCCAGTAGAGCGACTG 224975 30 100.0 34 .............................. TCATGCAGGTCAGCGCCGCCGTAGCGGGCCCTGC 224911 30 100.0 35 .............................. CTCGCGGGTTCCGAGTCGGCGAGATCACTGCCCGG 224846 30 100.0 34 .............................. GGTGACGCGGTCGCCGAGTTCACCGTGCGCGGGC 224782 30 100.0 35 .............................. CGAAAGTCGATGGTGACCGTCCCCGCCGGGACCGG 224717 30 100.0 34 .............................. ACACTCGAGCTCTTCTTCCCGGACGGCAGCAAGA 224653 30 100.0 37 .............................. GCACTGTATCGGCCAGTGGTGGTGATCACCTGTTCGT 224586 30 100.0 34 .............................. ACCGAGACGGTCGCCGGCATCTACGACCCCTCGC 224522 30 100.0 37 .............................. GACGGATGGACCACGACGGTCACCGACTCGACGGACG 224455 30 100.0 35 .............................. GTCTACTCGCCGGAGGTCCCGACCTACGAGGGCTT 224390 30 100.0 36 .............................. CCGGCGGTGATGGTGGTCGAGGCGATCTCCCTCCAG 224324 30 100.0 36 .............................. CATTGCTGTGGGCTGCAGGACCACGTCCCGCGCGTC 224258 30 100.0 34 .............................. GCAACGGCATCTTCACCGGCGTTCTGTTCGAGCA 224194 30 100.0 33 .............................. GCCCGCGTAGCTCAGGAGCCCGTCTCGCTCCGT 224131 30 100.0 36 .............................. GACCGAGCACGAGCCACGCGAGAGCCGCTCCCGCCG 224065 30 100.0 37 .............................. CGCGTCGATCGGAGATACGTCCGACCGAGCACTCCGA 223998 30 100.0 36 .............................. GCCCCGCGTCGAGCGTGCAGAGCGACACCGCAGTTA 223932 30 100.0 35 .............................. TACGGAACACTACTCATCAAGCGGGAGAACCTATC 223867 30 100.0 38 .............................. TCGAGAACGACGGGATCGTCCCGACCGAGGCCGTTCGA 223799 30 100.0 36 .............................. CACCGTCGAGTTCGAGACCGAAGAACACGCCGCCCT 223733 30 100.0 35 .............................. AGGGAGTACACCGAGGTAGGCGTGGCCCTACTCGC 223668 30 100.0 34 .............................. GGCCGAGATCTTCGCGAGGAGCACGATGGCGATG 223604 30 100.0 35 .............................. TCCTGCTGCTGGGTATCGCGATCGCCTACCGCCGG 223539 30 100.0 36 .............................. TCGCGCCTACGAGAACCATGTCGACCAACGATACGC 223473 30 100.0 36 .............................. TGGCTGAATACTGCCGGTCCGGCCGTCGACGGTGAG 223407 30 100.0 34 .............................. GACCTGCTCCGAGCGTCGGACCTTCAGCAGTACG 223343 30 100.0 36 .............................. CTCTTTCAGCGCGTCCACGTCCACGTCATCGCGGAA 223277 30 100.0 36 .............................. AAACGAAAGACCGCCGGAACGTCTCGCTCAATCACG 223211 30 100.0 36 .............................. GCGTCGAACGTCGTGGCGGTCCGCGAGGTCCAAGTT 223145 30 100.0 35 .............................. CCAGATGAGACTATCATCGTCGTCGGAGTTCTGCC 223080 30 76.7 0 ..........A..TT.C.....A.....CT | ========== ====== ====== ====== ============================== ====================================== ================== 51 30 99.5 36 GATTCAGACGTACCCTTGTGGGGTTGAAGC # Left flank : GCCGCCCTGGTAGATGGCGGGCGTGTCGTGGGCCTCGTAGGTCGCCTTGTTCTGGGCGCCGATGCCGCTGGGGGTGGCGTCGACGATCACGTCCGCGGTGCTCACGAGGTCGTCGAGGTCGCCCGCCACGGGGATGCCCGCGGAGTCGAACAGCTCTCGGCGCTCCTCGACGGCGGCGTAGAGGTCGTACCCCTTCGAGACGGCGGTTTCGGCCTCGAAGTTGGGCGAGGTCTTGGCGACACCCACGACCTCCATGTCGCGCTGTGCGACGACCGCGTCGGCGACGCGCTTGCCGATTGTGCCATAGCCAACTACACCGACTTGGATCATGGGCGTAGGTGGGGCGGAAGCGGATAAGTAGCCGGCGGTTCCGGGCAGCCATCAACCTGACTCGGCCCGCCGAGTTCGACCCCCAGGGGGTTCAGGGGGTATTGGCGGTCGACGGAAATAGTGAAGTGAATACGGGGCAGTCAGGCTGTATGGTGGGTCAATTCACCATG # Right flank : ATTGACACGGTAGTGGCCTGTGTGATCTTCTCGCGATATACTTCGGCGTCGGGACGACCATCGACAGTTCGCCCTTTGCCATCCCTAACCTCTCGAGCAGTGACGACCTGCAGGCTCTTCCGGTACGGTACTGCCCACTCGCCGAGGCTGCCGTCGCAAGACCTACTTGCCCGTCCGGCGAACCCGGGGACATGACCGACCTCCGTACCGCCGCCGAGACGGCGATCCACCAGTGTCTGAACCTCGGAGCCGAGGAGTCCATCGCCATCGTCACCGACGACGAGCGCCGCCCCATCGCTGCGGCGCTTTATGAAGTCGCCGCCAAGGTCACCGCCGACGCGACGCTCGTCCAGTACCCGCCGGGCGACCAGCACGGCCAGGAGCCACCGGAGCCAGTCGCCGCGGCGATGCAGAGCGCCGACGCCTTCCTCGCGCCGACGACCCGCAGCCTCTCACACACCCGCGCCCGCTCGGCCGCCTGTGAGGCGGGCGCCCGCGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTCAGACGTACCCTTGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.60,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 167449-171331 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGGLC010000002.1 Halolamina salifodinae strain DSM 26232 Ga0451177_02, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================================================================================================================================================================================================== ================== 167449 30 100.0 35 .............................. TATTATCGACATTGTGCTGTCGGGATTTGAAATCT 167514 30 100.0 36 .............................. CTCCAGTTTCGAGAGCACGGCCCGCAGGTCGGCCAT 167580 30 100.0 35 .............................. AGCCTGGCGAATAACCTGGTGGTGGCCCAGTATCA 167645 30 100.0 36 .............................. CTGAAGAACTTCAGCACACCAGCCACCTGAAGGATC 167711 30 100.0 33 .............................. CTCGATGGCTTCCACGATTTCATCCACGACATC 167774 30 100.0 35 .............................. AGTCGTGCAGCACGACGACGGGATCAGCGGCGCTC 167839 30 100.0 38 .............................. ACCTTTATCGCAGTCCCGGGCCGTGATGTCTATGTCGT 167907 30 100.0 35 .............................. TGCCTGTAGCCAGTAACCCCACTCATCAGAGTCAA 167972 30 100.0 39 .............................. GCACAGGGGATGCAGACGCCGATCACCGGAACGGTCTCG 168041 30 100.0 49 .............................. CGCCGAGCAGGCGGTCGAACCGCTTCTCGGCGTTGTCGTCGAACAGGTC 168120 30 100.0 34 .............................. ACCCGCCGCTCCTCGCCCGGCGGGTCGATTCAGT 168184 30 100.0 34 .............................. CCCCGAGAGCGCCCGGCCAACCACACCCCCAACA 168248 30 100.0 36 .............................. TGTGGCACGTAGCGACACTATGACGCAAGTAACCGT 168314 30 100.0 37 .............................. GTCGGCGGCGCCCGTCGGCCCGCCGCAATGCGAACAC 168381 30 100.0 35 .............................. GCTGTAGGCCCGTGAGGAGAACCCCACCGCTCCGG 168446 30 100.0 36 .............................. GCCGACGCCGACAGCGAGGCCGACCTGAAGAAGGCC 168512 30 100.0 35 .............................. GTCCGGCCCGTCGCCGTGGCGAACCACCCGGCGGC 168577 30 100.0 42 .............................. TCTTCGAGGACGACCAGGACAACGGCCTCACGCGGCTCGTCG 168649 30 100.0 35 .............................. CCACGTCGCTTCCAGATTGTCGTAGCGGTCCCCTT 168714 30 100.0 33 .............................. GCCGGACGTACCCGGTGAAAGACCCCGACGACA 168777 30 100.0 36 .............................. TCGAAGATCGTCGTGAGGTCGCCCTCGGTTGTCTCG 168843 30 100.0 34 .............................. CGAGATAGTGGGCGCGGCGGCGATCGGGAGCGTC 168907 30 100.0 36 .............................. CACCGATGAGTCGGGGGCTGTCTCCGCCGGGAACGC 168973 30 100.0 35 .............................. ATCCACAACGGAGTCCTGCAGCTGGTCAGGGACTG 169038 30 100.0 36 .............................. CCGGTTGACTCGACCGGGACCCCGCAGTCCGCGGCC 169104 30 100.0 37 .............................. GACGACCAGTCGACCGTCGGCCAGCGCCGAAGTGGGA 169171 30 100.0 35 .............................. GACCGGAAGGCCATCAATCTGGAGCATATCGAGAA 169236 30 100.0 37 .............................. CGAGGAGATCCCGCTGGTAGTCGAACGGCTCGAACCC 169303 30 100.0 35 .............................. GACTGCTCGCCGGTGACATCGCGGTTTATCTCGCC 169368 30 100.0 36 .............................. GGATATGGACGCTAACACTGTGGAACTCACTAAGTC 169434 30 100.0 34 .............................. ACTTACAAGGCCTATCTGTTAAGGTGAGCGCCAC 169498 30 100.0 36 .............................. GTCTCCTTTCCACCGCGGATGATCCTCCCCCGACTT 169564 30 100.0 35 .............................. ACCTCTACCGGCCGGCGGCCGTAGTCGGTGATCGA 169629 30 100.0 36 .............................. GTCGACCGCGCCCCTATCGGCCCGAGTAAGGACTAA 169695 30 100.0 36 .............................. TCCAACTCGGTGCTGGAGGTCCGAAGCGTCTCCTCG 169761 30 100.0 34 .............................. CCCGACGCCCGGTATGCCGTCCACGCCGACCACC 169825 30 100.0 38 .............................. TCGAAGCGCAGCGAGAGATCGCCGGGACCGATGACCCC 169893 30 100.0 36 .............................. GACGTGCAGCCCGGCGAGGTAGAGGCGCTGGCCGAC 169959 30 100.0 33 .............................. GCCCAGCGGTCGCTCTCGGCGGTCCACACCGGC 170022 30 100.0 35 .............................. AACGGCTACGACCTGCTGGGCAACTACGCAAACGG 170087 30 100.0 34 .............................. GTGAAAGTGGCGAAGCGACTCCCCGAGGGGTGGT 170151 30 100.0 35 .............................. GCGCTTGCGCTGGGGCGAGAACCGGACGGGTTCCA 170216 30 100.0 35 .............................. AGCCGGATCAGTCGCTCACTCGCATACTCTCGACT 170281 30 100.0 34 .............................. GACTACTACTCGGGGACGCCCTTCTCGGTGCACA 170345 30 100.0 34 .............................. GTCGAGGCGTAGGTCCGCGCCGACACCGTCTCCG 170409 30 100.0 34 .............................. TTCGTGACCGTCTCGACGGTCTGGCTGATGCGTT 170473 30 100.0 33 .............................. TCGCTGGCAGTCAGCTAAGTGTATCGTTGGCGA 170536 30 100.0 35 .............................. TTACGCACTTGGCGCCGCTTGGTTATTGATGTCGT 170601 30 100.0 35 .............................. CGGTATGCCGATTACGGCATGGCGGCGGCGGTGGA 170666 30 100.0 36 .............................. CGGTGTGGATGATCAGGCCGTTCGGAACATCAAAAG 170732 30 100.0 36 .............................. GACCCGCACCACACCGCACCACACACGCTACACCCC 170798 30 100.0 34 .............................. ATCAACGGGCCTGCCGAGAAGGGGGTCGCCAACT 170862 30 100.0 36 .............................. CCGGTCTGCGTCGCCCCCAGCACGGTGATGTTGTGG 170928 30 100.0 35 .............................. TCCGAGTCGTTCGCGCCGCTGGAAGGCGTGGCGAT 170993 30 93.3 36 ......................G.C..... AGCTTGAACGCGAGGACGTGATCGGCCTCGCTGATC 171059 30 76.7 213 .T........A..T..C.....G..A...A TCGGGGACAGGAACGGTCTCGCCGTCGACGAAAAGGCTTCAGACATCCCTCCGTGAGTTGATCCACCCCGGCGGTCGTAGACGACGTGATTTACGACGTTTCAGAACCCTTGTGGAGGTAAACTTCGGCGTCGGTCAGGTCCGCCTGTCCCGCCCCCTCAGATATTCCCTTGTGGAAACAGAGTGTGGTACCCGACTGGGACTCAACAACGGA 171302 30 73.3 0 A..C....T.TT....GA....G....... | ========== ====== ====== ====== ============================== ===================================================================================================================================================================================================================== ================== 57 30 99.0 39 GATTCAGACGCACCCTTGTGGGTTTGAAGC # Left flank : GATGGTCTCCGCTGCCGGCCGGGCCGCCCAAAGGAGCGTGAGAAGCTGGCAGCCCGCGGCGGCGAATCAGGTAGAACAGCGAGCAGGACAGCCCCACGGCTGCGTGAAGGGCACGGAGCAGCGGGCGACTGACAGCCATGAATCGAGCGATCATCGATGCGTTCGGGGCTGGTAAACGTGCTACTGCTCGCGAGCCTCCAAGCGAGGGACCGCGTTTCCCCGTGCTTCAGTTCCCCCTGAACCCCGTTCATGTAGTCACCCATGAGGGTCATCACGTTCGCTGTACGCGATCTACCGTCGCAAGCCGAGCGTCGCGGGGGCGCCATCTTTCGGTGAGTCATAGGGCGACTTCTCCGGATGGAACGTCGTCGTAGAACGGGGAAGGCCTATGAGCCCTCCAAGATGTCGACCCCACGGGGGGTTGGAGCGGATTGCGGGTCGACGGAAGCTACTTGGTGCGGGGACCTCTTAGCAGCGTTGTATGTCCGGAATTGGGCATG # Right flank : CTAGTCTTGGGCGTACTCCTGTGTGAGCGTCGCGGGTGATTCCACCCTAATACACGATCGGCTTGATTTTTGACGATCACTGTCTCCGTCCTAGATGTTCGACCTGTAAGAAATATTTATGTGCCCATGGAGTGATGAATGAGCCGAATTGTGACAGCAATAGATAACGAGGGTCCGTGATGCGAGTGCTTGCTCATCTCCGTGCACGGACAGATACAGCGTACCAGAACGACTATCACCACAAGCTCAGGGGTCGGATCTGGGACGCGCTCGAGGACACCGAGTACGAATCGGCACACGACACGAACGACCCGCCCGGGTTCTCTTTCAGTAACCCGTTCCCTCCTCGGGATATGGCCGAGGGTGACGAACGAACGCTCATCGTCTCGGCTCCTCAAGAGGGGCTCCTCTCAGCGGTCGCGACTGATCTCCAGGAGAGCCCGGAGCTGAACGTGGGTGAGATGCCGTTCACTGTCGAGGATCTCACGCCGATCACGCCG # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.29, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTCAGACGCACCCTTGTGGGTTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGTTTGAAGC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.80,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 181018-188703 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGGLC010000002.1 Halolamina salifodinae strain DSM 26232 Ga0451177_02, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 181018 30 100.0 35 .............................. GCCGGTGACGGGCTCGAGGGAACGCCGATGGTGGT 181083 30 100.0 34 .............................. GGCGTGCAGGACGGCACCGAGTCGGCGACGGCGG 181147 30 100.0 33 .............................. CGCCGTCGGGAAGATCGGCGAGTGGACCGACGC 181210 30 100.0 34 .............................. GTGCGCTGGGTAGCGCAGGGACTGCGCCATAATG 181274 30 100.0 35 .............................. TTGTGGTGAACTTCCATCCCGTCAAGAGGCTCGAA 181339 30 100.0 36 .............................. CTCGATCAGATCATCCAGGCAGTGGTATTCCCGGTG 181405 30 100.0 33 .............................. ACCACCTGATCGATCAGTGGGAAACTGAAGGGA 181468 30 100.0 34 .............................. CCTGCACGCTGAAGTTCCCGGTATGCCTCGATGG 181532 30 100.0 36 .............................. CCGTATCGCTTCGGCCTGATCGAAGGGGCCAGGTGT 181598 30 100.0 35 .............................. TCCCCGCACCACACCGCACCACACACGCTACACCA 181663 30 100.0 36 .............................. GGGCACGAGGGGAACCCGACAGAGGGGGATAGCCGA 181729 30 100.0 34 .............................. CGCAGGGTGATCCGAAACGTGGCCCTCAGGTGGA 181793 30 100.0 35 .............................. CCGAAGGTGACCGTCGAGCAGTCCGGGCAGGTGTA 181858 30 100.0 33 .............................. GGACAGACGGTGTCTGATAGGAATCTATAACTT 181921 30 100.0 35 .............................. ATCCCGGAACTGATCTTCACTAAGGTGGGGCATAC 181986 30 100.0 35 .............................. CCGAAACTGGAGACGGTTCGGGAGGAGTACGACTG 182051 30 100.0 36 .............................. CGCCGCCGCTTCGTCCCACCCGACGAGGCGGTCCCA 182117 30 100.0 32 .............................. ATGCAGGGGAACCGATTATGGCCGGATCCCGG 182179 30 100.0 36 .............................. AGTTCGTGGCCGTGCACGTCGGCGTACACCGTCATG 182245 30 100.0 38 .............................. GACCACGCGCTGGAACAGGTCGCGGTCGGTGTGGCGCG 182313 30 100.0 37 .............................. CGCGAGTCGGTCGCCTCATCCAGCAGCGCCGTCCGAA 182380 30 100.0 36 .............................. GCCGAGGAGAGGATCATCTTGTCGGAGGTCCGCATC 182446 30 100.0 33 .............................. CCCCATCCAGCAGTGCAGGTGTGTCTGTGAACG 182509 30 100.0 36 .............................. CCCCGTAACGCTGTCAGCATGCGACGCTACACAGGC 182575 30 100.0 37 .............................. CTCCCGTTCGGGTGTCGTCGACGCCGATCGAGGCGTG 182642 30 100.0 34 .............................. GTCGACTCGATCGTGGAGGTGGCCGAGCTTGGCT 182706 30 100.0 34 .............................. CCTCCGTGGCGGTATCAGCCGCCTGAGTCGTGGT 182770 30 100.0 35 .............................. TGTCAGTTAACCCTGTTAAGCTCTGAGCATGAACA 182835 30 100.0 34 .............................. AGCGGCTTGTTGCCCGGATCGACGACGTGCGGCG 182899 30 100.0 36 .............................. TACTCCCGAGGATTCGGCCCCCGAGACGACCGAGCA 182965 30 100.0 34 .............................. CGGACTGTGGGGTGCGTACCGTGAGGTGGCCGGC 183029 30 100.0 36 .............................. TCCTCGACGGAGTGGAGGCCTTTATCCGACGACGTC 183095 30 100.0 34 .............................. CCCGAGTGCGTCTTCCAGAGCGTGAACAGCATCG 183159 30 100.0 36 .............................. CCATCATCCCCATCGAAAGAGTGAACCACGCCACCC 183225 30 100.0 36 .............................. ACGCTGTTCTGCCCTGCTGTTCTGATCCTGGATCAT 183291 30 100.0 34 .............................. CCCCTCCGCGCGCTGGACCGAGGTAAGCGCAGTC 183355 30 100.0 36 .............................. TCCAGTTCGATCCGGGCGTCGTCGGCGGAGAGCACG 183421 30 100.0 36 .............................. TAAGTACGGATATTCAAGCCTTATTTCAGAGTAGTG 183487 30 100.0 37 .............................. AGAAATCTGACCGCGTGGTTCGGGCGATGGACCGGCA 183554 30 100.0 37 .............................. TGTTGGTGTACGGGCTCACTCGGGGCCTATACGCCAC 183621 30 100.0 36 .............................. GTCCGCGAGCCGGTAGAACAGCGAACGATAGCGATA 183687 30 100.0 36 .............................. GCGAAGCGATGGAAGATTTCCGCAACCTCCGGGCGG 183753 30 100.0 38 .............................. TCGGGGTCAGTCATCGCCATCACCATCCTCGCGGCTGT 183821 30 100.0 35 .............................. CAGAACGGGAGATCCGCCTGATTCCCCACGCCGGT 183886 30 100.0 36 .............................. TCCGACGGGAGCTCGCGCTACCCGCTGGACATGATC 183952 30 100.0 37 .............................. CGGCTCGGGTGATCGACGATGACACGCCAGATCATCG 184019 30 100.0 35 .............................. CTCGAGCTCCTGGTCGACTGCGTCGAGGACGTCCT 184084 30 100.0 35 .............................. GACGGAGTAGTCCACCAGCGACGGGTCCACGCTGG 184149 30 100.0 35 .............................. ATACGCAAGCACGCCTGGTGGGTCTCGTTGAGCTC 184214 30 100.0 37 .............................. GACCCCGCCGTCGCGACGGTCGCGGCGACGGGTTAGC 184281 30 100.0 35 .............................. ACGACTCGGGTCCTCCGGACTCGGCGTCCTGGTCG 184346 30 100.0 36 .............................. GTGATGGACGCGGTGAGCACGTCCTCGACGGCGATG 184412 30 100.0 35 .............................. GACTCCCCGTGCTGGTAGCCGCCCGACCGCGCGCC 184477 30 100.0 35 .............................. CCCCGTCTCGAAGATGAGGTCGCCGTGGGCCGGCC 184542 30 100.0 36 .............................. GCCCGGGTGAAGTTGTCGCAGATCGTATCCCAGGCG 184608 30 100.0 37 .............................. CTGCGTCGGATGCTCGTACTCAGTCCGAACGGGCCGG 184675 30 100.0 36 .............................. CCACGGGGGAGACGTCACCGACGAACTCCGCCGGCT 184741 30 100.0 36 .............................. GACCACGAGACCGTTATCTCGTCCTCAACGGAGGCG 184807 30 100.0 36 .............................. ATCAGCGGGGCTGCCGAGAAGGGGGTCGCCAACTGA 184873 30 100.0 36 .............................. GCGGGCAGCGTCATCGTCGCCGGTCTGCCCGACATC 184939 30 100.0 36 .............................. GCTCAAGCATCTGGATCCGGCGACTCACCGGACTGC 185005 30 100.0 36 .............................. CCACCGTGCCTTGATCGTCAGTCACCACCGAACCCT 185071 30 100.0 36 .............................. CTTACACAGCGGCACACGTCGGACGCCGGTGTAAGA 185137 30 100.0 36 .............................. AAGCTCGACTACGGTGTCGGTGGCGACACCGACGAC 185203 30 100.0 36 .............................. CTGTTCGACACCAGCCTGGAGGAGCCGATCTACGGC 185269 30 100.0 35 .............................. AATTTCCAGACCGAACGCTAATGGTAATGGGACCT 185334 30 100.0 37 .............................. GCCGAGACGTACGAGGTGGTCGGAGATGAGTGAGGCC 185401 30 100.0 36 .............................. CCACTCGCCGTCACTGGAGTTGTCCTGCTTCGACCA 185467 30 100.0 33 .............................. ATGGGGTGACTCCGCATGGCACAGAACACTATC 185530 30 100.0 35 .............................. AGGCAAGGAAGTAGGACACCGAGAGGGCGGCCCTC 185595 30 100.0 34 .............................. CGTCTCCTCCTTCACGTCCTTCAGCCGCCACACG 185659 30 100.0 37 .............................. ACTGAGGCCGTCGTTCGTATCGCTCCCTCCGGGCCGG 185726 30 100.0 36 .............................. GAGACGAGCGATCTGACGCTCGATCTCTCGTGGGGC 185792 30 100.0 35 .............................. TTCTCCTTCTCCGCCCGTCTCCGGTCCTCTTGGAG 185857 30 100.0 36 .............................. ATTTGCTACCCAACCACCGTCTGGAGCGTTCTGCGA 185923 30 100.0 38 .............................. TTCGACGTCGACGCCTCGACCGCCTGCAGGTGCGTCGC 185991 30 100.0 36 .............................. GTTCCGGGTCTCGCTCAGCTGGTGCTCAGTCTCCCA 186057 30 100.0 36 .............................. CGAGAACTGGTCGTGCTCGTTGCGCCACTCGTGGAG 186123 30 100.0 36 .............................. GTCCTGCGAACCCTCGGCTCCGGCGAGGTCGAGGCG 186189 30 100.0 35 .............................. CCGTAGCCGTTGTGACAGGCTCCGGGAGCAGAACG 186254 30 100.0 36 .............................. CTCCGTTAGGCCGTCATCGGAACAGCCCACTTCGCC 186320 30 100.0 36 .............................. ATCCCGCGCACCCTCCAGACGATCACGGGGACCACC 186386 30 100.0 35 .............................. CACGAGGGCGAGGACTGCAAAGCGTGCTCCCGCGA 186451 30 100.0 36 .............................. TCGACGGTGCCGCCGCCGGAGAGGCCGGCCAGCTTG 186517 30 100.0 34 .............................. ACACTGACGTTCGAGGCCGAGTCGAGGTCCGAGA 186581 30 100.0 34 .............................. ACACTGACGTTCGAGGCCGAGTCGAGGTCCGAGA 186645 30 100.0 35 .............................. GTCTCGGCCCCGGTGTCGGTCTGCGCGGCGCCGGC 186710 30 100.0 36 .............................. GACGCGCTATGGCTCTGCGAGTACGAGCTCGACGAC 186776 30 100.0 33 .............................. GGACAGCGGGTGCGACTCCTCCACGCCCTGCTG 186839 30 100.0 35 .............................. CGGGTGGATTTGGGAACCGTCGTCGGGGTCGCCAC 186904 30 100.0 33 .............................. GACTCCTCGCTGGAGGAGGGCATCTACGGCGGC 186967 30 100.0 42 .............................. CTGGGCCTGCTCCTCCTCCCGTTCGCCAGGACCGTGGCGGTG 187039 30 100.0 35 .............................. TCCTCCGGGTTGTCGGGGTACAGGGCCTCCTCGAC 187104 30 100.0 36 .............................. GTCGAGGATCTAGAGCTGATCAGCTCCAGGACGAGC 187170 30 100.0 34 .............................. CTCGACGCGAACCCCGTCTACGAGGGTGTTGCTC 187234 30 100.0 34 .............................. CTCGACGCGAACCCCGTCTACGAGGGTGTTGCTC 187298 30 100.0 34 .............................. CTCGACGCGAACCCCGTCTACGAGGGTGTTGCTC 187362 30 100.0 34 .............................. GACTGCACGTTGAGGGTCGCGGAATCGACCGCCG 187426 30 100.0 35 .............................. GTGCTCGCTGACGCCGAACGCCGGGTCGCCCGGTA 187491 30 100.0 35 .............................. GCCTACGAGGAGGTGCCTCGGGAGGACGTCGTCGA 187556 30 100.0 42 .............................. ACCCGACAGACCGTCGGGATCGAGCGCGACGCCGTCGACCAG 187628 30 100.0 36 .............................. TGGGTCAGGAACGCCTGGCTGTCACCACCGGACGTG 187694 30 100.0 35 .............................. TGCTTGTCCATGTAGAGCCGGTCCTGGGCACCGGT 187759 30 100.0 34 .............................. ATTCAGGTCTTGATTCAAGACAGAAACAGAGGGT 187823 30 100.0 35 .............................. CGCGAGGGCTACGAGCGCGTGTACGGCGACGGAGC 187888 30 100.0 36 .............................. CAGGAAACCATCGTCGGTCTCGTCGCCGTCAGCCCC 187954 30 100.0 36 .............................. ACGGAACTGGAATCCGTGGAATCAGGGACGCTTCTG 188020 30 100.0 36 .............................. GTCCAAGCCAGTTCAGGCCAGCCACGCCGACGCCGA 188086 30 100.0 35 .............................. AACTACGACGTCTACGGCTTCGCAGCCTGGCCCGA 188151 30 100.0 35 .............................. GGCCGTTGCCCTTCCCACGGCCGCGAACTTACAAC 188216 30 100.0 36 .............................. CATCAATGCGGACGAAACGGGCAGCAGCACTGTGAG 188282 30 100.0 35 .............................. CGAAATCTTCGTCGCTGCCGTGGCTGATTGGGGTC 188347 30 100.0 35 .............................. ACAGACGATACCGCTCTCGCCGACACATCTCCTCG 188412 30 100.0 35 .............................. GGCTGGAACTCGTGGGGGATGCGGTCGTTCTCCGC 188477 30 100.0 36 .............................. GGGTGGTCGTCGCGGTCGCCCGAAATTGAGGTCATG 188543 30 100.0 35 .............................. GAACTGCACGCCGACACCGACGACTATCGGGAGCG 188608 30 100.0 36 .............................. CTCGACCTGCTCCTCGAGGGCGTCGACGCGCTCGTC 188674 30 83.3 0 .......................ACC.G.G | ========== ====== ====== ====== ============================== ========================================== ================== 118 30 99.9 35 GATTCAGACGTACCCTTGTGGGGTTGAAGC # Left flank : ACCCTCGAACGGACGGTGGAGCATCCCGACCTGAACCGGAAGGTGAGCTACCAGTATCTGCTCCGACTGGAGGTGTACAAACTCAAGAAGCACCTGTTGGCCGGGGAGCCGTACGAACCGTTCCGGCGGTGGTGGTAGATGTACGTGATCGTCGTCTACGATATGGAGGCCGACCGGACCCAGTTGATGCTCAAACTCTGTCGCCGATACCTCATCCACGTGCAGAACTCGGTGCTCGAGGGTGAGATCACCGAGGGCGATCTCACGACGCTCAAAGGCGAGATCGAGGACCTGCTACAGGCGGGGGAGTCTGTCGTGGTCTATGAACTCTCCTCGGACTCCCTACTGAACCGCGCAGTGTACGGTGACGACCCGGCAGAGGACAGTCGATTCCTCTAGTCGATGTCGACCCCCCGGGGGCCCACGAGGGATTCGGGGTCGACGGAAATAGTGAAGTGAATACCCCTGGAAGAGCGGGTATGGTGGCCAAATTCACCATG # Right flank : GTTTCCCACTCCTTGTCGGCCGAACCTTCGACTTCACACGGTGATCTGCATACCGTCTTCGGGAACGAGAACATTCTCTATTGCCGATTGTAGTTCATCACGGCCGAGCAAGCAATGGTTGATCGCCTCCATATGGACGACCGCAACCGTGGCGTCGGTAGCGTCACGAACCGCAGCAATATCCTGGATGCCCATCGTGATGGGGTCGCCCTGCTCGAAACGTGCCTCCCCACCATTGAGAATGACCATCTCCGGATCGAACTGTCCCAATGTCTCTTTCACCGGCTCGTACCAGACCGTGTCGCCCGCAGCGTACACTGTCTTTTCGCTCTCGAACACGAACCCTGAAACTGGTCCCATATCCTCGGCTAACTCCCCATGCCCGTGACGGGCGGGTGTCCGGTGAATGGTGACGCCCTCGAAGGTAATCTCGTCATTGACTGGCCGCACATCAGTGAAGCCCTCCTCGGTGAAGGCCTCCGACTCCTCGGGCTGACAGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTCAGACGTACCCTTGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.00,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //