Array 1 151-1861 **** Predicted by CRISPRDetect 2.4 *** >NZ_UXFL01000036.1 Flavobacterium psychrophilum isolate 55-SE558_S1_R1.fastq.gz, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== ============================== ================== 151 46 69.6 29 TAAT.T....A.ACC...CGGGT....................... TTTTGTTTTCGTCAAATTCCCCATTTGTG 226 46 100.0 30 .............................................. ATTAATGCGCTAATTATCGAAGGTAGCACT 302 46 100.0 30 .............................................. AGGACGATTATAAATTTATGCTAAATATTA 378 46 100.0 30 .............................................. AGATATATCTAATACTAGAGCGTACGACAG 454 46 100.0 29 .............................................. AAAACAATATCGAAAAACTGAAAGAGAAT 529 46 100.0 29 .............................................. TATATCCGTGTTTGAATACACATTGCACC 604 46 100.0 29 .............................................. CGTTTTCGCACGTGAAATCAAAGTACTAT 679 46 100.0 30 .............................................. TTTTAAAAAATGGTTAAGTAGGAAAACTTA 755 46 100.0 30 .............................................. TCCAGTAAGCGAGATGTCGTATATCAAAGT 831 46 100.0 30 .............................................. AGCCAATGCCTTGTGTCCTGTTATGTGTTC 907 46 100.0 30 .............................................. AAAAGATTTAGCAACATAGATGATTGTTTT 983 46 100.0 29 .............................................. TTTTACTTTTTATTTAAAGCAACTGTAAT 1058 46 100.0 30 .............................................. TAATAAGTTGCTCGTTTCCGTTTATTCCGT 1134 46 100.0 30 .............................................. AGTAGGTAATGTATTCACAATAGACACATT 1210 46 100.0 29 .............................................. AAAACGAAATACATACAGCGCACGCATTC 1285 46 97.8 30 ............................C................. AGGCACTTCTTTAGACTTAAATAAGTCTTT 1361 46 100.0 29 .............................................. AGTAATAGATGGGGGGTTTGAATGCCGTA 1436 46 100.0 30 .............................................. TCATCATCTGATGAAAATTGCTGTTCAATA 1512 46 100.0 30 .............................................. AAGCAAAATAAAATAAAAGAAATATTTAGC 1588 46 100.0 30 .............................................. AATCAAAATAAGGTTTTAAAAGCGGCTTGG 1664 46 100.0 30 .............................................. AGGGCTTCGATTTTCTCGGGTTTCCATTTA 1740 46 100.0 30 .............................................. CGGTAACATCGATGTAACTTGCGAGCTGTT 1816 46 100.0 0 .............................................. | ========== ====== ====== ====== ============================================== ============================== ================== 23 46 98.6 30 GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Left flank : TAAAAGAAGCAACAAAAAAATGGTCAATGCCAATACAAAATTGGGGTATTGTTTTAAATCAATTTAATCTTATATTTGACAAAAGGCTCAGATTATAAAATCCAAGCCTAACTTTTTAACTTACACACTTTGCGGGATAGTGTCATCAAAT # Right flank : CATACCGCGAGTTAATCGTTTGATATGTTGGTGGTTATATGCTTATTTTGAAATTAAAAAACAGTTCTGTTTGTGTGTTGATATTCTGGTAGGTCTAATATTTCTAAATCCTATTTTTCAAAAAAGTTCTAATTGTTGCGAAGGTTTGTCTGTTTCTACAGGTTTTTTTCCATAAAAAAGCTCCATCATACCAAATTGTTTATCGGTTATTTGCATTACTCCAATTTTGCCGTGTTCGGGCAAACTATTTCTTATTCTTTTGGTATGTACTTCGGCATTTTCTCTGCTGGCACAAAATCGTATATAGATCGAAAACTGAAACATAGAAAAACCATCGTCCAATAATTTCTTGCGAAATTCACTGGCAATTTTACGCTCTTTCCGCGTTTCGGTAGGTAAGTCAAAAAAAACTAATATCCACAAACTTCTATACTGGTTTAAACGGGTGTAATGTTCGTCATACATAAATAGGGTATAAAATTTTTCTTGCGGCTCCCGCA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.91%AT] # Reference repeat match prediction: F [matched GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.00,-0.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 1457-998 **** Predicted by CRISPRDetect 2.4 *** >NZ_UXFL01000065.1 Flavobacterium psychrophilum isolate 55-SE558_S1_R1.fastq.gz, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================================== =========================== ================== 1456 42 97.6 27 G......................................... ATTGAAAAAAGCATTCTCTCGAATAGT 1387 42 100.0 27 .......................................... ACCGGAAAAAGCACCTCGATTAATAGT 1318 42 97.6 27 .A........................................ ACTGAAAAAAGCACTATTTTCAATATC 1249 42 100.0 27 .......................................... GCGTGCAAAAGACCCATCTCCAATAGA 1180 42 95.2 27 .......................T....A............. GCCTGCAAAAGACCCTTTTCCGATAGT 1111 42 97.6 27 ................................G......... TCTTTCAAAAGCAGCATCTCCGATAGA 1042 42 81.0 0 T..A..G.T......G.......T..........TT...... | TTG [1028] ========== ====== ====== ====== ========================================== =========================== ================== 7 42 95.6 27 AGTCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACA # Left flank : AAAGGAATTAAAATGACAAATAATAATTTTCTCATGTTTTTTGTTTTTAATTATTGTATAATGATTGTTTTTGTTGCCTTACCTTGGTTTGTCATTACTTCTACAAAGTAATTTCCTTTTGCAAAGCTTGAAACGTTTATTTCTGAATGATTAGTTGTTTTTATTAACTGCCCTAATGTGTTGTAAAAATTCACTTTTTCTAATTGTAAGCCCTCTTGCAAGGCTATGTTTAAAATTTCTGAAACTGGGTTTGGGTATATTTTTAAAGCACTTTCTATTGCAAATGAATGATTAGAAAGTAAACCACCAGAAATAGGGCTGAAATTTCTCCAAACCGCGGCTGCCTGATAAACGGCTTGAGTACCAGTAGGAACATTTAAAGCACAGTTTGACTGAGTAACATTACCGAAGACATCTGCATTAATAGCTAAAGGCATTGTAATGTAACATTTTACTGTGGTTAAACGTTTACAATTATAAAAAGCAGCATTTTCAATAGT # Right flank : AAGCGCAAAAGCATTCTTTCCGATAGATCTAACGAAATTCCCAACGTTAACCGACGTTAAACCTTGACAGGAAAAAAACGCAGATTCTCCAATAGCAGTCACAATATAGTTTTCCGAATTATAAGCTACTGTTTCTGGTATTTCTGCTGCTCCAGTAAAATTAGCGTTTCTAGCTACCTTAACAGTAAAAGGAGCTGTTGAAGAAGTAACAGTATATTTTATACCATTTGCTGTAAAATCTTGCGCTATTCCTAAAAAAGGAATTAAAATAAGAAATAATAATTTTCTCATGTTTTTTGTTTTTAATTATTGTATAATGATTGTTTTTGTTGCCTTACCTTGGTTTGTCATTACTTCTACAAAGTAATTTCCTTTTGCAAAGCTTGAAACGTTTATTTCTGAATGATTAGTTGTTTTTATTAACTGCCCTAATGTGTTGTAAAAATTCACTTTTTCTAATTGTAAGCCCTCTTGTAAGGCTATGTTTAAAATTTCTGAAG # Questionable array : NO Score: 2.52 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.12, 8:0.8, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.80,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA //