Array 1 34715-34284 **** Predicted by CRISPRDetect 2.4 *** >NZ_WNJY01000018.1 Granulicatella sp. zg-ZJ Scaffold18_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 34714 36 100.0 30 .................................... ATTAAATAAATTAGAAGTACGATTTACAGC 34648 36 100.0 30 .................................... GTCCGCGATAACAAGTCCAGTGTGCCCGTA 34582 36 100.0 30 .................................... TATATTGGTGATACACCAACATTACAAACA 34516 36 100.0 30 .................................... TAACAAAACGACCTAAACAAAAACAGTATA 34450 36 100.0 29 .................................... TCATTTTGTGTTTAAAGAAACTAAAGCAA 34385 36 100.0 30 .................................... TACCATTTTTTGAAACGTTTCTAAAAAAGT 34319 36 94.4 0 .........................A.........G | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 99.2 30 GTTTTAGAGCTGTGTTGTTTTGAATGGTTATAAAAC # Left flank : CTACTCGTCGTCAAGCACGTCAATTAGTAAACCACGGTCACATCACAGTTGACGGCAAACGTGTAGATATTCCATCATACAGCGTATCTGTTGGTCAAGTAATCTCTGTTCGTGAAAAATCAAGAAATGTTGAAGTTATCAAAGCTGCTGCTGAAGGTATCTTTGGTCGCCCAGACTACGTTTCATTTGATGTAGAAACATTAACAGGTTCTTTAACACGTTTACCACAACGTGAAGAATTATCAGAAAACATTGACGAAGCATTGATCGTTGAATACTACAATAAATTAGGTTAATTTTAATAGTATATCACACTCACAAATCCCTTGTATCAAGGTTTTTGTGAGTGTGTTTTTTGTCATCTATGTAAAGTTTAAGATGAATCGTTCTAGTTTATAATACAAGTATAAGATGTTATAATAAGTAAAATGAAACCATTCAAAGCTGAAGTTTTGCTAGAATGAGCAGTTTGAGGATAAACCGGTGAACAAAATTCTGAG # Right flank : AGAAAAAGAGATATGTCATATCGGAAATCAGGTTTTTCAAATAACCCGTTAAAAGATAAAAAAAGAGCCTTGGTTAGATGGACCGAAAGCTCTTGTAATCTCAACTGCGATTACAGCGATTGTTGAGATAATCAAACACTTTTTAAAATAAAAAGTGACGGGGAGGGGCGAAAGCCCCAACCAGTATCTGATTATAACATATCTCTTTAGTACAAACAATGAAAAGAAAAAATGATAATTTTTATGTAGGTATTGGAGTTGTAGTTTTAATTCTTTGGTGGATAAAAATTTTAATTTTTGGATAGCAAAGAATTGAGTTATTTGTAAGTATATACAGTAAAGTAATGAAGAAATTTAAGAGGTTTTCAGCTTTTAAATCAGGAATTTTTTCAAAAACAATTAGTAATGATGAAAATGATGTGAAAAATGAGAAAAGTATCTTATGAAATTGTAGAGAAATTGGAAAGTGTGCTGGATATAAAAACGGTACAAATTTCTTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTTGAATGGTTATAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGATTTGAATGGTTACAAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 41470-40378 **** Predicted by CRISPRDetect 2.4 *** >NZ_WNJY01000018.1 Granulicatella sp. zg-ZJ Scaffold18_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 41469 36 100.0 30 .................................... TCTAATTTAGCTGATTGTTTCCACATCACT 41403 36 100.0 30 .................................... GACAAATAACAAAAAGGCTCAAAATTTATT 41337 36 100.0 30 .................................... ATTGATGATGTTGATAATTATAGAGCTGTT 41271 36 100.0 30 .................................... AAGATGTTTCACAAGAAAAACGGAGTGAAT 41205 36 100.0 30 .................................... GTGTGTATCCTCTCCTTTTTCAGTATAGTT 41139 36 100.0 30 .................................... TATTGGCACACACTCCATGCGTAAAACGTT 41073 36 100.0 30 .................................... AAAAGAAAAGCGTTATATTGTCAATTTAAA 41007 36 100.0 30 .................................... GTTTAATTCTTCTTCAACTTGTTTTTTGTA 40941 36 100.0 30 .................................... TCTAATTTAGCTGATTGTTTCCACATCACT 40875 36 100.0 30 .................................... GACAAATAACAAAAAGGCTCAAAATTTATT 40809 36 100.0 30 .................................... ATTGATGATGTTGATAATTATAGAGCTGTT 40743 36 100.0 30 .................................... AAGATGTTTCACAAGAAAAACGGAGTGAAT 40677 36 100.0 30 .................................... GTGTGTATCCTCTCCTTTTTCAGTATAGTT 40611 36 100.0 30 .................................... TATTGGCACACACTCCATGCGTAAAACGTT 40545 36 100.0 30 .................................... AAAAGAAAAGCGTTATATTGTCAATTTAAA 40479 36 100.0 30 .................................... TTGCTGCTCAAGATGAACATGGGGAAGAGG 40413 36 88.9 0 .........................A...CA....G | ========== ====== ====== ====== ==================================== ============================== ================== 17 36 99.3 30 GTTTTAGAGCTGTGCTGTTTTGAATGGTTATAAAAC # Left flank : | # Right flank : AAAAAAAGACACACTATAAACGTTAATTCGACAGCGTTTCAAAGGCGTGTCTTTTTTTGTACACAAATGATTTTATCGATAAATATGATTTATTACAGAATCTATATTTACCAACGATATTTTTGTTGTCTATTAGATATGTTTTACTACTCCCCATGTGATTATTTTTCTTAGATATGGTACAATAAATACAGATATACATAAAGGTCGTTATAAGATGAAAAAACCAAAAATATTTGATATGTGTTTTTCTGTCATTCATGATGCCTATGTTAAAAAGGCAGTGCGTAAACAGAGGACGAAAGAGGAAGTAGATACAATTATTTGTTGGTTAACGGGTTATTCTGTCGAGAATTTGCATATGCTGAGTAGGTCTGAACACATTACGTTAGAGCAGTTTTTTAATCAAGCACCACATATCAATGAGTATGCTGATTTAATTACAGGGACAATTTGTGGTGTGAGAATTGAAGAAATTGAAGATGATATGATGAAGAAAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTTGAATGGTTATAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGATTTGAATGGTTACAAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //