Array 1 30763-31764 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSRK01000026.1 Klebsiella pneumoniae strain C43 26, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 30763 29 93.1 32 ............TG............... AGCAACGTTTCCGGATTATATGGCTGGAACGT 30824 29 93.1 32 ............TG............... TGGTGCTCTCAACCGTTACCCGCTGGCTGGAA 30885 29 93.1 32 ............TG............... TCGTGTTGTCCACGGTTACCCGCTGGCTGGAA 30946 29 100.0 32 ............................. AGGTATTTGACCTCATCCAGAAAGGCACAGAC 31007 29 100.0 32 ............................. GCACCCTCACGGATACCTTTTGCACAGTGTTA 31068 29 96.6 32 ............................C CTTAGAGAAGCAAAAACCCCACCGAGGCAGGG 31129 29 93.1 32 ............TG............... TTACTTTTTGGCAGTTGGTAAAACACTTTTGC 31190 29 100.0 32 ............................. CGAAAACGGCAACCTTCATAAAAACGTCTTTT 31251 29 93.1 32 ............TG............... CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 31312 29 100.0 32 ............................. CAGCGTCTGAACGGACGAAACATCCCTGTTGA 31373 28 89.7 32 ..........-.TC............... TGTGTGTTGGCGTTCGTTAAATATTGTTAGTA 31433 29 100.0 32 ............................. GCTGGATTTCCGTCAGTTGGTCAGCTGCTGCT 31494 29 89.7 32 ............TGA.............. TTCCGGACTCCTGTTTCCGGCAGTGGATTAAA 31555 29 96.6 32 .............C............... TGACTTTTAAAAAAAATCAGCTGAAACAGCCG 31616 28 89.7 32 ..........-.TG............... TTCCGGACTCCTGTTTCCGGCAGTGGATTAAA 31676 29 100.0 32 ............................. CACTACCAGATCCGAATGGACACCCGTAATGA 31737 28 89.7 0 ..............C.......-.....A | ========== ====== ====== ====== ============================= ================================ ================== 17 29 95.1 32 GTATTCCCCCCGCATGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : ACATAAAAACCGCAATGGTGGGGCTTTTGTTATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCTTCAGGATAACCCACATTCTGTCAAATCTTGCAGGTTGCAATCAGCAAAGGCCTTACGTCGATAAATTCATGCCTTGAGCTGGTAAGGAAGTATGACGTTATAACTCTGCATTTCTGGTTGATTAAGGTAGGGCGGCATTCCTGCTTTAAAAACAATCAATAATTTTGAACGGTAGTCGTCTTGATCCCAACTGCTACCTGATGGACTAGGCACCTGCAAAGATCCAATTTATACTGGTTATATATACAGTGTTTTTAAGTGATCGGAGGTTGTGCCTATGTTCTTAATTCCAATGGAAAATCCTGAGAAAATCGCCATCCCTTTATTTCTCGAGCGGTGTGCAGCTGGCTTCCCCAGCCCTGCCCAGGATTATACTTCCAGTGAGCTAGACCTGAACGATTATTGCATCAGGCATC # Questionable array : NO Score: 5.54 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.53, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Alternate repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5013-1876 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSRK01000132.1 Klebsiella pneumoniae strain C43 132, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5012 29 100.0 32 ............................. CCTCGATCATTCTTGCCAGTTGGGAGTCGGAC 4951 29 100.0 32 ............................. CACCTCGCCTATAAATCGTACCAGCCTGACAG 4890 29 100.0 32 ............................. GCATCGCTCGCCTCGTTCGGTGCTAACGCTGG 4829 29 100.0 32 ............................. CGGCTGCGCTGTTGCACATAGCCGCTCAACCT 4768 29 100.0 32 ............................. CGGCCGCGTTCTCCCCTGTGGGAGGGGTGGGG 4707 29 100.0 32 ............................. GAATTTATTGGGAGGTGATAGCTCTGGCAGGT 4646 29 100.0 32 ............................. GGTATGCAGGGCACACGCCAAAATAATTTTGC 4585 29 100.0 32 ............................. ATACGCAGTCATTAATCGCGGGTGTTACGCAA 4524 29 100.0 32 ............................. CCTGCTGTCATTTCCTTCGGCACTACCGGCGC 4463 29 100.0 32 ............................. TTACACAAGAGAAGCACTGACAACCATTCACA 4402 29 100.0 32 ............................. CCTAAATTGCCAATTTTCCTTGAGCGCTGGTA 4341 29 100.0 32 ............................. GTAACAGGTCAACTCTTTATCGCTAACGGCTC 4280 29 100.0 32 ............................. CTTTTCATTTTCTCATGACCGCCACCATTTCG 4219 29 100.0 32 ............................. AATACCGGCGGCAGGGATTTACGCCCGAGCAG 4158 29 100.0 32 ............................. CGCACGGTGCATTCACGCCCGCGCGCCTGTTT 4097 29 100.0 32 ............................. CATCGCTTTCCATCGCAGCTTTTTCCAGGCGC 4036 29 100.0 32 ............................. ATTTTGCGTACGCTCTCCCACAGCTGATCGTG 3975 29 100.0 32 ............................. TTTCCGGCAGCGTAGCCAACCCGGCCAACCGT 3914 29 100.0 32 ............................. CGGATTAAACGTAAGGCCGCGCGCTGGCGTAA 3853 29 100.0 32 ............................. GTGGTTTGTTACCGTGTTGTGTGGCAAAAAGC 3792 29 96.6 32 A............................ GGTTTATAGAGGCTGAGGTATTCACAATGCGC 3731 29 100.0 32 ............................. GGCGCCGGCCTGATCACTATCGGGTAACGGTG 3670 29 100.0 32 ............................. GGCCTGAACCAGAGCACGATCTACACCTGGAA 3609 29 100.0 32 ............................. ATTGGGTAGAGCAGGCGAACGGATGTCTTTTT 3548 29 100.0 32 ............................. TTTTCACGGTCGAAGTTGTGCATGCTTTCTGC 3487 29 100.0 32 ............................. ACATAGCGCCCGATACGCAGCGCCAGCGGGTA 3426 29 100.0 32 ............................. GATCGATCGTTATTGTTGAACCGCACTATGGT 3365 29 100.0 32 ............................. CTTTTAATAATATCATCGGCAATGTCCTTATC 3304 29 100.0 32 ............................. CGGGACCGGATCCGCGTGGGCGACCAGGATTA 3243 29 100.0 32 ............................. CACCGATATTCAGTGCGCCAACGCCATAGCAA 3182 29 100.0 32 ............................. GGCCCAGTAATCCCCGCGAAGTCCTGAAGACG 3121 29 100.0 32 ............................. GTTGCGAAGCCTACGTCCAGATCGTAGAGATA 3060 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 2999 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 2938 29 100.0 32 ............................. TCCCCTACCACCCACTGAGCAAACTGGTAGCA 2877 29 100.0 32 ............................. CAGATACCAACGGTTACTACGGCAATCAGCAC 2816 29 100.0 32 ............................. AAGGTTGACCTGTTGTCGGCAACCATCGAGCC 2755 29 96.6 32 .........A................... GAGGCGCGCGTTGTCGTCGGTGAGATGCGCGA 2694 29 96.6 32 .....A....................... GCCATTCGTGCTTCTTCGCTTTGCTGCATCCA 2633 29 100.0 32 ............................. GAATATAAAACCAGATTCCATATAGCCCTGTG 2572 29 100.0 32 ............................. CCGGTTACGGGGATGACTGCAATTCGCTCCTG 2511 29 100.0 32 ............................. TACAGGACGCACTGGCTGCGAAGCCGTTCGCG 2450 29 100.0 32 ............................. TCGCTCTGTGTCATACGGTTATTAGCCCTGGA 2389 29 100.0 32 ............................. AATTTGCTCATAGAATTGAGACAGTAAACTTT 2328 29 100.0 32 ............................. CCGAAATGGATACCGCCGCGATTGAGTATTCG 2267 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 2206 29 100.0 32 ............................. GCGGCGTCAGGTGTGTGGCAGAAAATTATTGC 2145 29 100.0 32 ............................. TCGTCTGAGTTCCGGCTTACGCCGTGCCGACA 2084 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 2023 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 1962 29 96.6 29 ............T................ GGGTTCACTTGGGTGAAACTGAACTAACT 1904 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 52 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGTG # Right flank : GTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTCTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCTTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTGGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //