Array 1 10649-11037 **** Predicted by CRISPRDetect 2.4 *** >NZ_VATR01000032.1 Escherichia sp. E4694 sequence32, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 10649 28 100.0 32 ............................ ACATCATGAACGCGCAGCAAAATGCGGCTATT 10709 28 100.0 32 ............................ AATCCGGATATGGTGATTTATATCTACCCGCA 10769 28 100.0 32 ............................ GGTGCGACGGCAGCAGCCAGCTCCGGGACAGA 10829 28 100.0 32 ............................ CAGTCCGCCAGCTCGTTCGTGCCGCCTGATAA 10889 28 96.4 32 ..........A................. AAAAGATGTCCTCCTGCCGAGTACAGCGGAAT 10949 28 100.0 32 ............................ TAAATTTGAGGGTGAGGGTAAGCGGGGTTTCC 11009 28 92.9 0 ....................T...C... | C [11032] ========== ====== ====== ====== ============================ ================================ ================== 7 28 98.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGTTTATCGTCGAGTTGCAGGTTCAGTTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCTAACGAACTGCTGTTTGGCTCGCTGGTGGATGGTGGCCAGGTGACTGTCGCGCTGGATAAAGAGAAAAATGAGCTGACCTACGGGTTCCAGAGTGCACAAAAGCATAAACCGGAAGCCGCGCATTAATCAGATTGTTAGGTAAGTTGATGAAGTCCGTAATCTCGTCAGGGGTTACGGACTTTTTGTTTATGGGGTGGAGGAAGTTCAGACCCTTTTTTTGATGATGATGGTAATTTGTTGATAATTAGTGCTGCTGGAAGGTAAGGATAAAAAAGGGTGGCAGCAGGAAAATGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : ATACGATGATGGCAGAAATTTAGCTGCGTTATGGCGTTCTCAACTCCGAACCATTAGCCACAACACGCAATAACAATTGTGATAATTGCGATAGAAATCAATTTCTCGCACAGAAATCAATGCTGTACTAATCCTAACTCCTTCAAATAAAAATAATCACAGGATGTGTTTATGTCTTCCAATTACCTTACTCCATCTGACCTCAAAACCATTCTCCACTCTAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTGCAGGTGAATGGTGGGCGAGTGGAATATGTTACCAGTGAAGGTAAGGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGTATTGATGTTGGGGATGGGAACATCCGTTACTCAGGCGGCGATGTGTGAATTTGCCCATGCCGGGGTGATGGTGGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCGGCAAATGAAGTTGATGTTGATGTCTCCTGGCTCAGTCCGCAAAG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 25677-26304 **** Predicted by CRISPRDetect 2.4 *** >NZ_VATR01000032.1 Escherichia sp. E4694 sequence32, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 25677 28 100.0 32 ............................ TCTTTCATCTCCTCCAGTCTCGCCCACGCAAT 25737 28 100.0 32 ............................ AATTCTATGCATACTAAATTATTGACACTGAA 25797 28 100.0 32 ............................ TTAAAAAGACCTTCCGTGGCTCAACATGTATT 25857 28 100.0 32 ............................ ATTCACGCAGGCGCTGAACACCGCGCGCGCAT 25917 28 100.0 32 ............................ AGAACGGCGACATTGTGGACGTATTAGTAATC 25977 28 100.0 32 ............................ AGATCTGCCAGCGCCTCTGCGGGGCGGTAAAC 26037 28 100.0 32 ............................ CGGCACCAGCAATGGAATTAGCGAAAAGCGGG 26097 28 100.0 32 ............................ GTGTACGCGCATTGGAGTAACCGCAATTAACT 26157 28 100.0 32 ............................ GTTCAATTATCAAATATTACCCGCGATATGAT 26217 28 100.0 32 ............................ TGCGATAACGAAGCTGTTGTTTCGTCGCCGTT 26277 28 89.3 0 ....................T..TC... | ========== ====== ====== ====== ============================ ================================ ================== 11 28 99.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TCATCCCCGCCAGGCTGTGCAATATGCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTAAAATATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCTGACCTCATGGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTATAGAGATTGATTCGTTTGGTTACGCAATGAACACGCTGTTTGCGTGACGGAGATTATGACCGTATGTGTTCTGTTCAATTGTTTATCAAAAGCTATGCATAAAATATGAGATTGAAGAAGTACCAAATCGACCCTTTTTTTAGGTTGAAATGTAACTCATTGATTTTGTTTATTGCTGTTTTGAAGTCTGGAAAAAGGGTTTAAATCTGCGACTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : ACTTAACTCACCATCCTCCAGTATTTATTCCCCGTAACTCCAAACGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGTGCGCTAATTCGCAACAAACAGGTTTGGCACATAACTCCGAAAACACACGGCTAAGCCGCACTATAAGCGCAACGTATAAGGGAGCGGTGAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //