Array 1 1019431-1020249 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABGYP010000001.1 Klebsiella pneumoniae strain 4928STDY7071684, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1019431 28 100.0 32 ............................ CGCATAAGTTCGTTCCGGCGGCCGGGGCGGGC 1019491 28 100.0 33 ............................ CGAACTGTTCCGCCAGTTGCTCGCTGTGTTCCC 1019552 28 100.0 33 ............................ TTAAGCGTCACACTCACCTCGGCGCAGACAACC 1019613 28 100.0 33 ............................ TCACCCTGTCCTGCTGGACGTGAAGAAGGTTGC 1019674 28 100.0 33 ............................ TAACCCAGATGTTTTCGATAAAAGCGAAGCCGA 1019735 28 100.0 33 ............................ CGAAGATGTTCATCCTGACGATAGCAAGAAAAT 1019796 27 96.4 33 ......................-..... TTGAGATGGCTCCAATGCTAGGTCATGGAATGG 1019856 28 100.0 33 ............................ TATGTTCCAGGCGTTCTATGCCCCTGCTGATGC 1019917 28 100.0 33 ............................ TTTATGGCGACCCCGAAGCCTTTGGGGAGCGAG 1019978 28 100.0 33 ............................ TTCCATCATCTGCGGCGGGATAGCGCTGCGGGT 1020039 28 96.4 33 ............C............... CCTGCAGCTGGCCGTCGAGCTGACGGATGCCGG 1020100 28 96.4 33 ............C............... CCTGCAGCTGGCCGTCGAGCTGACGGATGCCGG 1020161 28 96.4 33 ..............T............. TTCATCACGTGTGAGCGGATTTGGCTCTATCCT 1020222 28 92.9 0 ...................A.......T | ========== ====== ====== ====== ============================ ================================= ================== 14 28 98.5 33 GTCTTCCCCACATGCGTGGGGGTGTTTC # Left flank : TTAGCGTTGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGACTTGACGGCGCAGCGCAGGATAACAGCCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCGGTAACTTCGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCTGGGGATGACAAAAGCGTTTTACCCCCGGCTGCGGGCCGGGCAGGCCAGTAGGGTAGACCGGTCCAGGTCAGCAGCAAATCGACGGTGGTGATATGGGGACATACTTTTTCGTTTGATGAATGTTGATGCTGATGCGGAAACCCTGCGGAGCGCAATTGTTGTAAATCTGGCGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : TCGCCTTTCAAGTGACGACAAGTCACGTCTGTGCGCATTTCTCAGATGAAAGGGGATTCCTGACGTAGAGGCATCAATGCCGTGACATAGTTATCCTTAATGTACATCAATGTCTTCGAAATTTCGTTTGGCCAGCACAGTCTCATATGTTTTTTGTATGATTTTACTTATAAATATTCGTGAACTATGTTTGTCCTATACTTTCTTTAGGGGCATCTAAATCATTCGAGTTTATTACTCGTCTGGAGATATTGTTCTTCATATTAATTATTTATAGCTTTTTATATTATTATTTTTGGCTTTTATCTTTAATTCAGTGTGTTGTGGATATTTTTGATTTTATAAAAAGTTATTTATAAGTTTCCCGGTTTTTAGTATTAATAAAGGGCACATGTTTTTTAAGGAAAAATTCCATGAGGCGCTTGATCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAGTTTTGAAAACTGTCCAGCGAAAACCCGGATG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACATGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1029003-1030318 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABGYP010000001.1 Klebsiella pneumoniae strain 4928STDY7071684, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================= ================== 1029003 28 100.0 33 ............................ TCTTTCTGCGAGCGATGCGTGAGCGCCTTCATA 1029064 28 100.0 33 ............................ TATTTTGGCTAACTGCACCCGCCTGGTTGAGAT 1029125 28 100.0 33 ............................ CATCATCGGGCTTGAGTGGCAGCAGGTCGATAT 1029186 28 100.0 33 ............................ CAGCAACCGTGAGCAGAAGTACAACATGCTGGC 1029247 28 100.0 33 ............................ TAATGCGCCTGATCTGGCTGCTGTTCATCGCCT 1029308 28 100.0 33 ............................ TGCAGAACGGCTCTTTGACGGACGTTGTGGTAT 1029369 28 100.0 33 ............................ CCAGAAAGCCGAGCTCCCGCAGCCGCGTATGCT 1029430 28 100.0 33 ............................ TACGGATTTATATACCTCGTGGAACTCGCCTTC 1029491 28 100.0 33 ............................ CCTGCGTTGTCAGCTGGCGAATCTCGCCGATCG 1029552 28 100.0 33 ............................ CATATTTGCAAATTATTTCCTGATAGGAGAATT 1029613 28 100.0 33 ............................ CCAGCGCCGGGTTTGCCGTTGTTGATATATCCC 1029674 28 100.0 33 ............................ TACACCCGCCGTGGGAACGACCTGGACACCTAT 1029735 28 100.0 33 ............................ CACCAGGCAGGGCGGCGCGGATAGCGTCAGGGG 1029796 28 100.0 33 ............................ CGTAACGGGGATAACGAATGCAAATCCTGGCGT 1029857 28 100.0 33 ............................ TTATGGAGGCACTTGAGATGAGCAAAGAAAGAT 1029918 28 100.0 33 ............................ TGACGGACATACCGCGCTGCCCGGTCTGCGGCA 1029979 28 100.0 33 ............................ CCGTTGGCGGGACAGTTTTTTCACTGACAGGTA 1030040 28 100.0 33 ............................ TGGCACTGTCACTGTCGAGACGATATCGACTGC 1030101 28 100.0 33 ............................ CCTCATCTAGTAAAAGCGGTTTTGTTATGAATG 1030162 28 100.0 33 ............................ TCCGCCGTTTAATCGCGGTGATGATATCCGGCA 1030223 28 100.0 41 ............................ TGGAATCCACGACGCGCCGTACCAGCGCTGGCATTCGTTCT 1030292 27 85.7 0 ......A...T.T....-.......... | ========== ====== ====== ====== ============================ ========================================= ================== 22 28 99.3 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTGCGTGGACGAATGAAGCTGTGGTTTGTCGAACCACGGCCAAATGTTTTTGTCTCAGGCGTCAAAGATTCGGTCGCGCAAACCGTTGTTGATTACCTGTTGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGATCTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT # Right flank : CTTGTGAGGGGTCTACCAGCATTGGCGTACTGGAGTCTTCCCTACACATGTGGGACTTAGCAATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGTAGAGGTAGGAATATTTTATTGCGATAGAGAAGGGAACTGTTTAAAGCAATAACGGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGACTTTACCAGTCACATGATTTAATACGCCAATTAAATCCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGCGTGTATACATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCCTACCGAAGGAAATATACAACTCATCTCCACATAAAAGGCCATATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTATGATGAGGTAGAGCACAGGCTACAAATTGGCT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //