Array 1 42951-44443 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAVMS010000008.1 Escherichia coli strain UFMG-H7C NODE_8_length_165466_cov_5.318031, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 42951 29 100.0 32 ............................. GCTATCGCAGCAACACCCCAGCAGGAGCACAC 43012 29 96.6 32 ............................T CCCACTTCCCGCGCTCCATATCGATGATATAC 43073 29 100.0 32 ............................. AAAAGGGCCGCATTGACGGCCCTGTGTTATCG 43134 29 100.0 32 ............................. GGGTGGCGGTGGTGCTGTAATTCACACCGGTA 43195 29 100.0 32 ............................. TATTCCCCCAGTCACCCCCGCCACCAAAATCA 43256 29 100.0 32 ............................. ATTTTTCAGACTCATCAAAATAATCCTTTAAT 43317 29 100.0 32 ............................. CATTGCCTTTGCAGCGTCTTTCCGATCATTCA 43378 29 100.0 32 ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 43439 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 43500 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 43561 29 100.0 32 ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 43622 29 100.0 32 ............................. CTCTGTCGTTTTCATATTACCGGCCTGCCACT 43683 29 100.0 32 ............................. GCCAGGAATGCAGCATTTTGCATGGGAAATGA 43744 29 100.0 32 ............................. CCGATATTTTCCTGACGTCGAAAAAAGAGGAC 43805 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 43866 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 43927 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 43988 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 44049 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 44110 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 44171 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 44232 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 44293 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 44354 29 100.0 32 ............................. GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 44415 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 70144-70661 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAVMS010000008.1 Escherichia coli strain UFMG-H7C NODE_8_length_165466_cov_5.318031, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 70144 29 100.0 32 ............................. ACGTTGGTGATTTCGCTGTCGGGATCGGCATG 70205 29 100.0 33 ............................. GTCGCTGGCTAATCCATTTGTCGAGGCGCAAAA 70267 29 100.0 32 ............................. ACCTCCTCGTAATCCTGTCCCTGCAGAGCCAG 70328 29 100.0 32 ............................. CCAGCCGAAACAACGCCAGCAAAATCGACCGC 70389 29 93.1 32 .A........A.................. CGATACTTCCGGATATCCGCAGTGATGTGGAT 70450 29 96.6 32 .A........................... GGATATAGAGCGGGTACTCGAGCGGAGCGGGG 70511 29 96.6 32 .A........................... TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 70572 29 96.6 32 .A........................... GACGCACTGGATGCGATGATGGATATCACTTG 70633 28 75.9 0 .A.........C..T....A..-.C...C | T [70652] ========== ====== ====== ====== ============================= ================================= ================== 9 29 95.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : CAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAATTAAGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTTTCGGTGTCACTCATCCGCT # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.20,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //