Array 1 4858373-4857062 **** Predicted by CRISPRDetect 2.4 *** >NZ_WIPD02000001.1 Escherichia coli strain Fec6 unitig_0, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4858372 29 100.0 32 ............................. TTTCAGAAAAGTACGGCTCAATTGATCGCCCC 4858311 29 100.0 32 ............................. CGCTGGTGGCGGAAAACAGCCAAAATAACGCA 4858250 29 100.0 33 ............................. TGGATTAATCCGCGGCTGGCGATATCTCGCAGC 4858188 29 100.0 32 ............................. TCCCTGTCGCCGTTGGCGGATTCTTTCCTGTA 4858127 29 100.0 32 ............................. CGATAAACGCTCAATACCAGCCGGAATAATCG 4858066 29 100.0 32 ............................. GCGGAATCTGCTGCGCACAAGTTACACGGCGC 4858005 29 100.0 32 ............................. CCTTGATCGGATTCCAGAAACGAACCACTAAA 4857944 29 100.0 32 ............................. TCGTTTAGTGTGGAATTTGGCGACGCGGAGCG 4857883 29 100.0 32 ............................. TTTAGCTAATATTGGGCGGCTAACGTCATCAA 4857822 29 100.0 32 ............................. GTTAAATATTGTTCACCATCATGGATCAGGAA 4857761 29 100.0 32 ............................. CATGAACATGGACGATGAAAAAATAAGGGAGG 4857700 29 100.0 32 ............................. CATGAACATGGACGATGAAAAAATAAGGGAGG 4857639 29 100.0 32 ............................. AATTAAATGATTTTGATGCGCGCCGACTTGAA 4857578 29 100.0 32 ............................. CCACGCGGCTGCATTCAGTGATATCCAGTTTG 4857517 29 100.0 32 ............................. CATCTATTTATCTCGCCGCGATTGGCGATAAC 4857456 29 100.0 32 ............................. CCGAACGGCTGGCGAAGCAGGTGGCTGGCGTA 4857395 29 100.0 32 ............................. GTTTACCGCCCCGCAGAGGCGCTGGCAGATCC 4857334 29 100.0 32 ............................. GGATGACCTGTCGCTAAAACTCGCCGCGTACA 4857273 29 100.0 32 ............................. TCCGTTTGGTCCACCAAATGTTTGATGCTTCA 4857212 29 100.0 32 ............................. TTCAGGGTGTGATTCCGCATACCAAGCAGTAA 4857151 29 96.6 32 .A........................... GGCGCACTGGATGCGATGATGGATATCACTTA 4857090 28 72.4 0 .AA........C..T....T-.G.....C | C [4857065] ========== ====== ====== ====== ============================= ================================= ================== 22 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : AGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAATTAAGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTTTCGGTGTCACTCATCCGCTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 4884712-4884073 **** Predicted by CRISPRDetect 2.4 *** >NZ_WIPD02000001.1 Escherichia coli strain Fec6 unitig_0, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4884711 29 100.0 32 ............................. ATACGCCCCAACCAGAAATAAATTTAGGGGAT 4884650 29 100.0 32 ............................. CAATATTCACAATGTGGGATATATCCGATCAC 4884589 29 100.0 32 ............................. CGACCGCGTGGGCGTCTACGTGGGGGATTAGA 4884528 29 100.0 32 ............................. TGGGTCATGCCGGTGATCGCCTGCCCGTCGTG 4884467 29 100.0 32 ............................. GCGGCGCAGGGATTCGTACAGTCAAAAACGCC 4884406 29 100.0 32 ............................. AGTTGGGGCGGCGCAATAACGAGACGATACGC 4884345 29 100.0 32 ............................. GGGAGTGGCACTTCTGGGGTAGCGGCGGCCCT 4884284 29 96.6 32 ................T............ TCAACGCGCTCAGACGTTGCGTGAGTGAACCA 4884223 29 100.0 32 ............................. AAATATCCAGGGCTGGGCTGGAGGCAGACGGC 4884162 29 100.0 32 ............................. CCCGGAATGCATTCTGAAGGTTTGCTGTATAT 4884101 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.4 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAATTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGAATAAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACTGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //