Array 1 85370-85733 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABMMS010000003.1 Gordonibacter pamelaeae isolate MGYG-HGUT-02487, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 85370 32 96.9 34 ........................A....... CGAAGGCGCACTTGATGACGAAGCGATCATGCGC 85436 32 96.9 34 ........................A....... GGCCGGCGGGAGGGGCGCCGCGTGGCGCTGCCCC 85502 32 100.0 35 ................................ ATGATGCAATCACTTACCATCTGCGGTAGCTGCTG 85569 32 100.0 36 ................................ CAGAAGATCGTGCAGGGCCCCCAAACGCTTTCCATG 85637 32 100.0 33 ................................ AAAAACACGTCGCCAACAGTCATTAAAGATATG 85702 31 87.5 0 ..........-.C.....T..C.......... | C [85716] ========== ====== ====== ====== ================================ ==================================== ================== 6 32 96.9 35 GTCGCGCCCCATAGGGGCGCGTGGGTTGAAAC # Left flank : GGCCCCTGCATCGGCTCGGTCGGGCTCATCCCCGACCCGCAGCGGCGCAACGTCGATGCCCTCATGCTGGGGTACTCCCTGGCGAAGCCCGCCTGGGGCCGGGGCTACATGACGGAGGCGTCGCGTGAGGTTATCCGCTACGGTTTCGAGGAGCTGGCCCTCGGCCTGATCTCCTGCACGCATTACCTGTTCAACGACCGCTCCCGACGCGTCATCGAGAAGTGCGGCTTCGAACGCGAGGGCGTCATCCACGCCGCCGAGCCCGCCCCCGACGGCACCATGCAGGACCTGGCGACGTACTATCTGACGCGCGCGTCATGGGAGGCTGCCTCGCACGAGAGCGCGCGAAACGGCGCGAACCCGAAGCTCCGGCAATCCACTCAAGAGGTTCGCGCAGAATGACACGTTCAATGGTGCTGCCTGCTGGTTGCGCGAGGTGCTACGCATGTTGAAAAATGAATACTATAAGTGAAAAATGCACTATCCTGCATAAACTACCA # Right flank : CTGGGATTTCCGCAACGTGCCGACGAGGAAGCAGGTCGAGCCCTCACAAGCTCGCGGGTTGGAACGAGCGCTCCCACAGTGGTTTCTTGCAGAACTGGTTGATCATGGCGGGCTCTTTCGCGAAAGCGGCGCCGCATGCGTCGATGGACTGGACGGGTTATTTTCCTTCGAAGACGATGCGGTTGCCGAAGCTCGCCCGCCCGACTTCGCGCAAATGCTATGGCGCACTCCTCGACGGGCGGTTGCAGCGAGCGGCGAGCCGACTGGTGCGGTCCCTGCACTGGCAAGGAGGCTCAACGAAGGTTGGAGCTTGCGGCGACCTCCAAGCAGTTGGTCTATAATTCTCGTTCGTAGAAAAACGGGGGAAGGGAATCCATGGCATCGGAGAAGCAGCAGGCGGGGCGCGCCTTAAGGCGGTTGGCGCGGAGGAGCCCGCTTGTCGCCCTCGCCATTGCGGCCGTGCTCGTGGTCGGCGCCGCGCTCGGATGGTTCGGCGCTGC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCATAGGGGCGCGTGGGTTGAAAC # Alternate repeat : GTCGCGCCCCATAGGGGCGCGTGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCGTGCGGGCGCGTGGGTTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.30,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 191682-187888 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABMMS010000004.1 Gordonibacter pamelaeae isolate MGYG-HGUT-02487, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 191681 36 100.0 30 .................................... GCGCATGTCGCAGCGGCTGTCTTTGTAAAG 191615 36 100.0 30 .................................... CAACCTCGTGTGCCTATGCAGGCTGCACCA 191549 36 100.0 30 .................................... TCCAGCTCGCGCTGGCGCTGGGTCGCTTCG 191483 36 100.0 30 .................................... GCAAAATGCTGACACCTCACAATGGAGACA 191417 36 100.0 31 .................................... AAAACGGTACTCGACTTCGGATGTGGAAAGG 191350 36 100.0 30 .................................... TATCGTATGTGATATTCGCCGCATATCGCG 191284 36 100.0 31 .................................... TAAAGCGCAGCGGGTTCCCCCCCGTGAGCAT 191217 36 100.0 29 .................................... CTTTAATATATCATGTGCGATTTGCATTG 191152 36 100.0 30 .................................... GCGCGAATGGATGGATGGGATGACTGATGA 191086 36 100.0 30 .................................... TTCTTGGTGCGGTACAGGCGAACGGGCATG 191020 36 100.0 30 .................................... AGAACTCGTTTATCCCGCCCTTGGCATCGT 190954 36 100.0 30 .................................... TTGGTCGTGTTCATGTGGAAGCGGGTAAGC 190888 36 100.0 30 .................................... CATCCAACATGGAAGCCGAGAAAGGAAGGG 190822 36 100.0 30 .................................... ACGCCTCCTTCAGCATCGCCGCCTTGTATG 190756 36 100.0 30 .................................... GATACTCTGCGAAAACACGCCTTGGGTAAG 190690 36 100.0 30 .................................... TCTTTAATATATCATGTGCGATTTGCAATG 190624 36 100.0 30 .................................... GGCTTGCCGCGCTATCTGACCGCCCTAGCT 190558 36 100.0 29 .................................... CGACCATAGGCGTGGAGAACTGGATACCG 190493 36 100.0 30 .................................... TGGAACGACGGGCGAACGACGGAGGGTACG 190427 36 100.0 30 .................................... CTTGTGCCAGATTTATAGGGCACAAGATGA 190361 36 100.0 30 .................................... TCGCGCCATGCGCTTTCTCAAGTTCTTCCT 190295 36 100.0 30 .................................... AAAGGTTGTCGTGGAAGACTGCAAGGGCTT 190229 36 100.0 30 .................................... CCACGCGAAGTTAATGGTCGGGTCATAATC 190163 36 100.0 30 .................................... AACCTCGAAGTCACCGGTCAACCCATTTGA 190097 36 100.0 30 .................................... GATGATGAATGGCATACGCACTATATTTAC 190031 36 100.0 30 .................................... GTGCTGCGATGAAAGGTTTATCCATGTGAA 189965 36 100.0 30 .................................... CAACGATTGATCGTTGCAGAACGTCCGATT 189899 36 100.0 30 .................................... ACGGAACACCGCAACGGGAGATAACCTTTT 189833 36 100.0 30 .................................... GCCAGCGCGAAGGTACTTTGACCCCCGTGG 189767 36 100.0 30 .................................... CGCCGCAAGTATTTATACTATACACGACGC 189701 36 100.0 30 .................................... CCATCGGACAGAAGGGATAATCATGATGCA 189635 36 100.0 30 .................................... GGGTTCCCCGTGACTATCAAAATACACAAA 189569 36 100.0 30 .................................... TGCTGGAGCAAGTATACTGCGTTGATAAGC 189503 36 100.0 29 .................................... CACTTTTATCGCTGTTTGGCTTCGAGTAC 189438 36 100.0 29 .................................... ATCTGGGTTCCCGCTGAGAAGTGCAACGT 189373 36 100.0 30 .................................... CGTTGCTTTTGATGCTGTTATCTTTGTTAT 189307 36 100.0 30 .................................... TAGGGCAGGAAGACATATGGGCAAAACCAT 189241 36 100.0 30 .................................... CGCAGAATATCTATGGGAAGGTGGAATGAT 189175 36 100.0 29 .................................... TCGCAAGCTATAATGATGCAGGCACGGGC 189110 36 100.0 29 .................................... TGCGACAAGATTTCCAGCGTTATCTACAC 189045 36 100.0 30 .................................... GTGGACGCGCCCGACGAACAGCCCGGTGCG 188979 36 100.0 30 .................................... ACATAATAATTACGTTCATGATTGTCAATA 188913 36 100.0 30 .................................... AATACGCATTCCAGCCAACCTTGGAAAATG 188847 36 100.0 30 .................................... TGCGGCGTCTCTGGAAGCATTAGAAGGATA 188781 36 100.0 30 .................................... CGCGGCTGGAAACTACTCGGACGTTACCGT 188715 36 100.0 30 .................................... AGAACGACAGCACGGTGATTGCGTTGATTG 188649 36 100.0 29 .................................... CGCTGCTGGTCTGCTCCGTCACCACGACT 188584 36 100.0 30 .................................... CCCACGTTCCCCTTCTCGCCTGCCTTTCGT 188518 36 100.0 30 .................................... GGTGAAGGCTCTTATGCTTACGAACCCGCC 188452 36 100.0 30 .................................... AAATGTCGAACAGGGAAATTGTACGAACTT 188386 36 100.0 30 .................................... GGTCGGTGTGGACTTCGTGGTGACTGTCGA 188320 36 100.0 30 .................................... GTGCTGCGATGAAAGGTTTATCCATGTGAA 188254 36 100.0 30 .................................... GCGCCGCATCATCAAGCTCGAAGAGAGCAG 188188 36 97.2 30 ..............G..................... CGCCACGCTCACGTACTTCCACGGATGGTC 188122 36 94.4 31 .......G......G..................... GGAAGTGGCGAGCTCGGAAGATGAACGCAGC 188055 36 91.7 30 ..............G.............G....G.. AAACGGCTGATACGCTCGTTGCATGCGCTG 187989 36 80.6 29 .......T..G.....G...C.....T..A....G. TAATCTTGGGCGCGTAGCCTTCGGTAGCC 187924 36 75.0 0 ..........G...G.TGG.G.......G.A....A | T [187890] ========== ====== ====== ====== ==================================== =============================== ================== 58 36 98.9 30 GTTTTGGAGCAGTGACAAACTGACTGGTAGTCAAAC # Left flank : ACTTATCGGCGAAGTGCTTGAGCGTGTGGAGGGCATGTTTCTCTCTGAGGATGACGTGCGTCAGGAGATTGAGACGGCGGGACGAACGCTATCCGAGCGGGTTGCCGCTTTGGGGTTGCGGCTTCAATCGGACTATACTTTTGACATACAATGGGAGATGCGGAAGTATCTGAAAGCTTTTGATTTCAGCGTTGATGTCGATTCTTCCGACACGCTCTTTGACAACCTGATAAAGTTCTTGAAGTTTGCATCCGACGCGTCGTTTAAAAAGCAGTTGGTTTTCGTGAATCTGAAGAATTTTTTGGAGACGGAAGAGGTTCAAGAGTTCTATCGGCAAGCGATTTTTTCAGAATTGAACGTTCTGCTGCTGGAGAACGTACCTGATGGAGCGAACTTTGAGTTCGAGAGAAAAATGTGCATTGATAAGGACTTTCTTCAATCATGAAGAAGCCCGCCAGTCGGCTTGTCCATCCTCCTGCAGAGAGGATTTTGCCCCAACG # Right flank : CGAATAGGATGACCAACCGGAGGGCATCGCTTTAAGATACAGGGGTGGGAGGGTGTGAGGTTGGATGCGTCTTCCGTCGTCGGTTAACAATTGCCGGTGGTTTTCAGGGCGATTGCCTGTACCATAATAGGGATAGATAGTTTATACTCGCACGTAGGGATTGCAAGCGGACCTGTTGCGAGGAGGAACCATGGCCGTCAACCGTCAGAAGCTCAAGCTGCTGTATCTCATGCGGATGCTCGAGGAGGAGACCGATGCCGAGCAGGGGCTCACGATGGCGCAGATCCTCGAGCGGCTGGAGGCACAGGGCATCACGGCCGAGCGCAAAGGCATCTACCGCGACATCGAGGCGCTGCGCGAGTTCGGCTTGGACGTGCGCACCTACCAGCGCGCGCCGGTGGAGTACGCGCTGGAGCGGCGCGACTTCGCTTTCCACGAGCTGTTGCTGCTGGTGGACGCCGTGCAGAGCTCGCGCTTCCTCACGCAGCGCAAAAGCGACG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGGAGCAGTGACAAACTGACTGGTAGTCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [23-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //