Array 1 56905-55469 **** Predicted by CRISPRDetect 2.4 *** >NZ_WKPL01000004.1 Holdemania massiliensis strain BIOML-A2 scaffold4_size244992, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 56904 33 100.0 34 ................................. ATAATAATTCATAAATGAACGACTATTCATGATC 56837 33 100.0 33 ................................. ATCTGTGTATGACTTATAATCTTCTGCATATGA 56771 33 100.0 36 ................................. GTATGCATACCATTTACCGCTTTGTAAACATCGACA 56702 33 100.0 35 ................................. ATACCATTCTTAACCCTCATTTTACCATTGACTTT 56634 33 100.0 34 ................................. ATGAAAATCATTGTTGACGATGAAGACTTTTACT 56567 33 100.0 33 ................................. TTGTGTAATTCTGTTGTTAACTGTAAATATTTC 56501 33 100.0 35 ................................. AAGGCTAATACATAATTGTTTTGATCCATCCAAAG 56433 33 100.0 34 ................................. AACAGTCAAGGGTGAAACACGAAAAGAGCAGGCG 56366 33 100.0 34 ................................. ACGTTAAAGGCGGAATCGTTTTAGTCGACACCCC 56299 33 100.0 33 ................................. GGTGCTACAAAGAGGAAAAGGTAAAGGAGGCGG 56233 33 100.0 33 ................................. ATGAATTATGCTGACCTTATCCAAGATTTTGAT 56167 33 100.0 34 ................................. ACTGGTTGCAATGTAAGGACCTGTTTCTAAATTC 56100 33 100.0 34 ................................. TATACCTTTACAGAACAGTACAATGCACAGCATT 56033 33 100.0 34 ................................. GTTCCGGGCAATCCGGTACAGTCGGCGACAAACA 55966 33 100.0 33 ................................. ATTAAGAATGCTGAAAACTTTACCAACCGTTCA 55900 33 100.0 33 ................................. TGCCATAGGACATCGAGCGGATCCAATACCTGC 55834 33 100.0 33 ................................. GCCGCAGCGATCGGTTTAACAGAAACAGGGGAG 55768 33 100.0 36 ................................. TGTTACACGACTTCGTGGTGATGATGATGAGATGGT 55699 33 100.0 33 ................................. CAGTTTGGTAATTGCCAAAGCGTTTTCGCGGCA 55633 33 100.0 33 ................................. GGATTTGCAGTTAAGTTTGTATAAGGAGGGCTG 55567 33 100.0 33 ................................. AATAGCTTATAAATATGTTATCTGCTTTAAATA 55501 33 90.9 0 ................T.............T.G | ========== ====== ====== ====== ================================= ==================================== ================== 22 33 99.6 34 GTCGCATCGCTCATGCGGTGCGTGGATTGAAAT # Left flank : AAGATCAAGAATAAAAGAGCATTTCGCGCTTATGCTGAAAATAAAAGGAGGGAATCCCCAATGCAAAAAAATCTGACTACACTCTGCAAGTTAGCTGCCATTCTGATCGTGATCGCCTCTGTCTTCTATTTTTCTTCTGGAGCGCTGAACCAAACACCAAACTTAAATGTTTCCAATATGCCATTGTCACAAATCTTAATACCTAATTGATTATAATTATGATGACTTTGGATATAATGAAAACATTTAGGTTTTTCTTGAACTAATTAATTATAGAAAACTACTTTATGAGGAATATTAGGAACGATTTTCCATCCTGATAATTCCTCTTTTTCTTTGTATTATGATTCTGGTGCGAACCTGAAGTGAACATAAAATCCCAGGGAGGTTCGCACCGGAATTATGTGAAATATGAGGAAATTGTTGCAAGTAAGTGGAGGATTCGATATTATAAAAGTAAGATAAGAATCATCTATACATCTTTAAGTTTCTTATCAACT # Right flank : AAAAACAACTTACATATATTCTCCTAGAATCAATCGTCGATTAGGATAGTCAAGTCGCCAGCTGCGCCTTGCTAAAAGATCCGCACCGCACAATCCTGCAACTTCCTGTTTCGTGACAGGATATAACACTCTATTCAATACCGGAACATGATAAAGTATTATCTCTGCAGCCCCGACTGTTAAGCGTAGAGAATCAAGTCGTTTTGCCGGAACTTCTGTCACGCCATCAACACCCATCATCGTTTCCAAATCCATAGGCATTGTGTCTGGCAAACTCTGATAAAGCAGAGATCCGCCACTGGTATCTGTATTTCCGCTGTCAAAACCCCACAACATAATCTGATCATTTGTTTGGACTCGCAGAACTGGCATATTATCCCAACCCACAAACTCATGGATTTCACTTTTCTCGGGTATTGAAGGCCTGACCCTCAATTGTTTCTGAGTTTCATCCCATTGCCAACAGGCATGTTGAAGAACATCCCAACCTAATAATCCAT # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCGCTCATGCGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCATCGCTCACGCGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.20,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 102474-100852 **** Predicted by CRISPRDetect 2.4 *** >NZ_WKPL01000004.1 Holdemania massiliensis strain BIOML-A2 scaffold4_size244992, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ==================================== ================== 102473 35 100.0 33 ................................... CAGCAGCAGAAGCAGAAACCCAAGCTCCTACAC 102405 35 100.0 35 ................................... ATTAAATACTTGTCCAGAGCCAGTTGCTATCGCAC 102335 35 100.0 35 ................................... TTTCCATACCATAAATCAATACCTAAAGTTAGACC 102265 35 100.0 36 ................................... GTCAAAACCGATTTTATTGACTAGAGGGTAAGGAAC 102194 35 100.0 33 ................................... GTCAATCACTGTTAGCCGATTAAAATCTACTCA 102126 35 100.0 35 ................................... AACTGTAAAGGGTGAAACACGAAAAGAACAGGCCC 102056 35 100.0 33 ................................... AGTATATACATACAATAAATTTGTTGATGTTTC 101988 35 100.0 33 ................................... CGTTGATTGCTCGCAAGGTGCAGGCAAAGCGTG 101920 35 100.0 35 ................................... GTGATAACCACTTTTTGATAGGTATCATAAGCTTT 101850 35 100.0 34 ................................... TACTGTACAGCTTCATTAAGTGTAATTAGGTATG 101781 35 100.0 33 ................................... CGTTATGTGAAGAATAAAAAGGGTATTGTTGTC 101713 35 100.0 33 ................................... GTTAATCTCAGGTGTTTTCGATACTCGCACCAC 101645 35 100.0 34 ................................... GGCGTCGCTTTGTCAATAAGTTCCTGTAGCACGG 101576 35 100.0 35 ................................... GGTTGTTGCTCCTAATTCGATACCAGTATCATTAA 101506 35 100.0 33 ................................... CTCTGCCGGCTGGTCGATGTCATGTGCTGCGAA 101438 35 100.0 33 ................................... TTGCTCTTAAATCCTTCGCCCTTGCCGGAAAAA 101370 35 100.0 34 ................................... TGGCATCTGAAAAACTTTACCGCCGAGTTGAATA 101301 35 100.0 33 ................................... AGAAGCCAAGAAGTCGGATTTTGGATTGATTAT 101233 35 100.0 35 ................................... CATCGTTTGAGCTTGAATCTGTTCAATACGAAGAA 101163 35 100.0 34 ................................... CATAGCGGGCCACGAAAAAAGATATCATAAATGA 101094 35 100.0 34 ................................... ATCATAGATAATTCCAAAATCTTTGTCATATGGG 101025 35 91.4 33 .............TG.A.................. CCACGTTTCTTACTTAATCAATCAAGGCTTTCA 100957 35 88.6 36 .............TG.A......A........... CTTCCTGTGGCTGAACTATCGTCGATGGGGTTATAC 100886 35 94.3 0 .............TG.................... | ========== ====== ====== ====== =================================== ==================================== ================== 24 35 98.9 34 GTCGCATCGCTCACAGGCGGTGCGTGGATTGAAAT # Left flank : GGCCTGTAAACCGAATGAAAAAACGGCTAAAACGCTGATCAATTCTATAATGGCACAAATCCAGATCGCTCCCTCAAACCAGCATATACAGGCCATTAGGGGAGCCAGAGGACTCAGTATCAACAGCTTTTTTAACCGTACTGGCCGGCGGCAAAGCCAAGCTGAACTCAACCATACAGAACAGTTCAAAATCGTTCCCAATATTACGGTTACTTCCACATAACTGTTCACGCTTTTCTCCTTTCTCTACGTTCTATGATAGAAAAAGAGCTGAGCATTTTTTGTCGTTTTGCCCACCTGGTCTGTGAAAGTTCATTTCAGATAGTTCCGAATAATATATCAGAGATTTCTAGTGCGAACCTGAAGTGAACATAAAATCCCTGAGAGGTTCGCACCAGAAATATGTGAAAAATGAGGAAAGAGTTGCAAGTAGATTGGTTATTCGCTATTATAAAAGTAAGATAAGAATCACCTAAATATCTATTAGTTTCTTATTCGCT # Right flank : CAAAGTCCTTTTTCTGTAAATGTAGACCCTTCCAAGTCGCATCGCTCACGCTACAAGGATAAGAAAGAACAAACAAAAAGAGGACTGAAAATCCTCTGTTTTATTTTGTGTGTAACACGCTGATTATGACAAAGGCAGCACAATTAGAATTACACCTCTTAAATTAAAATGAATCTGTATTATCTTTTAATAGAACTTCCTTTCCCCATTTCGTGTTTTGTAATGCTTTAAATATCAGCCAGCCTAACATACCTCCTGCCACATTCATAATCAAATCATCAATATCTGCAGAACGGCCAATGAAATACTGCAAAACTTCTATGAATAAAGAACTTCCTGCAAGGCTTATCAGGCAGATTCCTGCTTTGCGGCATTGAGGTAAACATACAGGAATTAAAAAGCCCAGAGGAACAAACATTGCAATATTCAATAATAATTGCTCGATCATTCGCGCAAATCCCATTTGATAGGTTTCCTGTATCCAAACAAACGGAATAAAA # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCGCTCACAGGCGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCATCGCTCACGCGGTGCGTGGATTGAAAT with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.90,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 36963-35314 **** Predicted by CRISPRDetect 2.4 *** >NZ_WKPL01000010.1 Holdemania massiliensis strain BIOML-A2 scaffold10_size103711, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 36962 33 100.0 34 ................................. GTAATCGCTTAATTGAATCATATCGGCCAGGTAT 36895 33 100.0 33 ................................. CGGTAAAGGCGAAACATCCGATATTGGTATCTC 36829 33 100.0 37 ................................. CGGTTTTAGATTTAGAAATGGACACAGCCTTAAGGCC 36759 33 100.0 33 ................................. ATCCATCCACAACACCTGAAGCGGTTGTTTTAA 36693 33 100.0 34 ................................. TTGCAGAAATGGAAAAGCTTTATAACAAAAAACC 36626 33 100.0 32 ................................. ATCTAGAAATGTCAAAGCTGGAAATTGATTAT 36561 33 100.0 35 ................................. GACAGGGGCAATTAAGCAATTGGCTAAATTAATGC 36493 33 100.0 34 ................................. ATCACGATTTACATTTCGCATGAAACCTGTTTCA 36426 33 100.0 36 ................................. GCAAGTCTGCAGACCGGAACCATTCCAGAGCTGCCG 36357 33 100.0 34 ................................. GATCTTTCTCTGCAATTTTTTCCGATTTCTTAAA 36290 33 100.0 34 ................................. TCGGTCTGATCATGAAGTATAAAAAAGCTCTGTG 36223 33 100.0 33 ................................. GATACTATTGAGCCTTATCTTTATCAAGACGTA 36157 33 100.0 35 ................................. GGTTGATTTAAAATCTTGATCATCAAGTTTCACTC 36089 33 100.0 35 ................................. CAGCGATCCGCTAATAATTTTACCGATGGTGTCCC 36021 33 100.0 34 ................................. CCTTTTAACAATGCCTTGAATTTTGCTATCTCCA 35954 33 100.0 36 ................................. CACAGCTTCCAGCTCATAGAGCTTTTCGGACAGATT 35885 33 100.0 34 ................................. AGAAATGATAAAAAAGGCTCATCGGAAGCCGGTT 35818 33 100.0 34 ................................. ACCGGCGCAGTTATCGTGCAGGATGCCGTTGAAG 35751 33 100.0 34 ................................. AAGGTTAACGCCGGTACCGGGATGACGGTTGTTG 35684 33 100.0 34 ................................. TTCAACCATTGTGGATTTACACCCTGACACTAAT 35617 33 100.0 35 ................................. TTCCTCCGCTCCGTAGATACCGTTACGCATAGCGA 35549 33 97.0 34 .............T................... TCGTCCTAATAAAAAGCCTTTTGGATCTTTTAGC 35482 33 97.0 33 .............T................... TCCCCAAGTTTTGGAGCTGCATCTGCTTTCCAG 35416 33 93.9 34 .............T.T................. ATTATCCTAATCCAGTGATATCTCATACAGTCTT 35349 33 84.8 0 ..............A....C....A...T..T. | A,A,C [35320,35327,35331] ========== ====== ====== ====== ================================= ===================================== ================== 25 33 98.9 34 GTCGCATCGCTCACGCGGTGCGTGGATTGAAAT # Left flank : GAAAATAATTTCTGATTCATTATGCGGTCAAATCTGGGCTGGTAAAGCTAGTGTTGTATTTTATTGGTCACTCATAGCTTATCGATGTGAATGGCGATATGGAATACGTGCACATCGTGTAGCTTTAATTGATGTTGGACATGTCGGTCAGAATCTGTATTTGGCCTGTGCAGCTTTGAATTTGGGAGCGTGTGGAATCGCGGCATTTGATGATGCTATTTGTAGTAAGCTTTTTGAGTTAGACGTTAATGAAGAATTTGTTGTTTATACAGCACCAGTTGGCACTGTCAATTCCGATGATATAGAAAAAGAAAAAGAATTTTATCGTTTTGTAGAAGAAGAGGGATTATAAGTGCGAACCTGAGGTGAACATGAAATCCTAGGGAGGTTCGCACCAGAAATATGTGAAAAATGAGGAAAGTATTGCAAGTATATCGATGTTTAGCTACGATAGAGATGCGATAAGAATCATATGAGTACTGTTTAGTTTCTTATTAACT # Right flank : CAATTTTCAGCAAGAAAGCTAAAAAAAAGAACCTTAAAAAATAAGGTTTAAAACAATTTTTCGATTGACCAATCAATACCGCAAATTAAAAATTAGATATTAAAAATCAAATTGCTGATCTATGATCGTAATCACCTAATAATTTTAATACAAAAATAGACTAATATCACAAAAAATCAAAAAGTGGTATGATTTGGGTGCTATTTGAAAACAAAGGCAACAAAAAAGCCCTTAACTAAGGGCTTCATCATCAACTGGTGCCGATACCCAGAATCGACAGACCCGCTTTATACGATTCCGCAAAGCCTTATTTTAAAGGCTTTTTTAATAGTTCATTTCATCATTCGGCATCATTTTACAATAGATTTTAAAAATTTTCGTACACTTTTCGTACACTTTTTCATTTCAAAAAATGTTCAGCTTTTGCAATCACATCGGGATCTATTTTTTTGTTTTTTAGACACTCAGCCAGTTCTTTGATCAGACATATTGCCTGGATT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCGCTCACGCGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCATCGCTCACGCGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.20,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 43657-44025 **** Predicted by CRISPRDetect 2.4 *** >NZ_WKPL01000010.1 Holdemania massiliensis strain BIOML-A2 scaffold10_size103711, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 43657 33 100.0 35 ................................. GTGATACTGGTATTGAGGTTGATCACCGGCTTGCC 43725 33 100.0 33 ................................. TTTTTAGCTTGCGCGTCTGATTTTTTAAGAGAA 43791 33 100.0 35 ................................. TTGTCCAGCCAGTATAACGGAATGCAACTATCAAC 43859 33 100.0 34 ................................. TTTTGCTGCTACCATTGCCTTGTATACTGCCAGC 43926 33 97.0 34 ......G.......................... ATTTGTTTTATCCTCCCATTTCTCGCAGGTATTA 43993 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 6 33 99.5 34 GTCGCATCGCTCACGCGGTGCGTGGATTGAAAT # Left flank : GATGATTGTCAGCAATTAATTGAAAATCCACAGGCTTTATCGTCAGAAGAAAAACAGCTTCGGCAATTACGCGGACAATTATTACTTGATCAGCAGCCAGCTGCTGAAGGATACGCCGAGAGCGTTCAAAAGGAAATCAATTCATTTATCAAACAAGGATATATTGAAGAACTAGATGGTAAATTAAGCTTAACTAAGGATGGTAAAGGTGCTTTCTGGATCAGCTTATCAAATGAAGCTTATTACTGATGAATAAATAAGTAATGTGTAGGATAGTTACGATTTAATTAAGTGCTGGAATCATGTTCACTCATCTTTAAATAAAAGAATAACGGGTGCGAACCTGAGGTAAACATAGAATCCCTAGGAGGTCCGCACCAGAAATATGTGAAAAAGAAAGATAATGTTGCAAGTAAAAGAATTATTCGTTATGATAGTAGCAAGTTAAGAATCATTTAAATCTCTTTTAGTTTCTTATTAGCTGTCGCATCGCTCACGCG # Right flank : TGATCGTGGCCATAGCGTCAGAATCGTCCAAATTTTCACATTACTTATGCGACATATCCACTGGAATTTGTAATTCATGCTTGTGATTTGCAGAGTATTCAATTACTTGTAAATGTAAAGAAAGGTAGAAATAATTAGAAAAAGAGGTATAATAAAACTATAGATAATTGTTGTCAGGAGGTGTGTATATGTTTTTAGCACACTGGAATGAATCAAAACAACAAGCACAGTCTTTGCAAAATCATAGTGAAAATGTAGCATGTTTAATGCAAGAAAATTGTTTTTCACTTGGTCTTTCTTCTACAGGGAAACTTATTGGTTTACTTCATGATGTTGGTAAAGCAAATCCGATTTTTCAAACATATATGCTAGAGAATCAAATCGAAAAAAAGGGAAAAATCAACCACGCTGCAGCCGGAGCGCAACTTTTAAAAGAGAAAATAATAGATGCGGAGATTTCGAACAAAGAGATTAATCCAAGCATTAATAAGCTGTTATTT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCGCTCACGCGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCATCGCTCACGCGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.70,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 52322-53692 **** Predicted by CRISPRDetect 2.4 *** >NZ_WKPL01000010.1 Holdemania massiliensis strain BIOML-A2 scaffold10_size103711, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 52322 33 100.0 33 ................................. GCAATCATAGTCATATTTTCTCGCCAGCATTTC 52388 33 100.0 33 ................................. AAAGTAAAACTTAGAAGCATCTAAAGTAGGCCC 52454 33 100.0 33 ................................. ATTGCCGACGCGTCATTTGCCGTGTTATGAACA 52520 33 100.0 34 ................................. TGCCGTTGTTTAATATCATCATCAAAAACAGCAT 52587 33 100.0 35 ................................. TTTGGCGATTAATTAGAATAATAGCAATTATTTCA 52655 33 100.0 35 ................................. GATTAGCATACCGGGGTGGATGGACATATTGTAAT 52723 33 100.0 35 ................................. TGTACCTTTGTGATATTGGAACTGTTGGTGTCTAC 52791 33 100.0 34 ................................. AAGTGTAGTTTTGAATGATTTTAATAGGAAGATT 52858 33 100.0 34 ................................. CGTCAGTCGATCCTGCCGGCTCACCGCCGCCGTC 52925 33 100.0 33 ................................. CGTTTTCAAACTAAATCCTTTAATATCAACCCA 52991 33 100.0 33 ................................. CAGGAAAAAAAGATCATTCATCAAAAGGGTAGC 53057 33 100.0 33 ................................. TAGGTCAGGATGAGGCAGGCAATCTGTTAAACC 53123 33 100.0 33 ................................. TGCGAGATCCTCAATCAAAAAGGTTTCAGGGCC 53189 33 100.0 35 ................................. GCAGCCCTAAAAAGTACCCATCATGAGGCGGGGAA 53257 33 100.0 35 ................................. ATTGAAGCCCAGATCATAGAACCGGCGGACTAACG 53325 33 100.0 33 ................................. ACCCTTGATACCTTGAGCGCCGGACAAGTCAGT 53391 33 100.0 35 ................................. CGGAGGAGAGCATCACAATATCAACACTCGTAATA 53459 33 100.0 35 ................................. ACTCCTCACCCCAAAAGCGTGGTTTATGGCTTACC 53527 33 100.0 33 ................................. TGCTAATAAAATAAGCTATTTTGCTAATACAAC 53593 33 100.0 34 ................................. GAACTCGCCAAGGCGTTGGGTACATATCTCCAAA 53660 33 93.9 0 .............................GG.. | ========== ====== ====== ====== ================================= =================================== ================== 21 33 99.7 34 GTCGCATCACGCAAGTGGTGCGTGGATTGAAAT # Left flank : GTGATTTGGATGCCTATCCACCTTTTTTATGGAAGTAGGCAAATTTATGTTAGTGTTGATTACTTATGATGTGAATACACAGACAAAAGCAGGAAGAACAAGACTGCGTAAAGTGGCAAAACAATGTGTAAACTATGGTCAAAGAGTACAGAATTCTGTGTTTGAATGTTCAGTGGATAATGCTAAATTAATTGAAATACAACATATACTGGAGGGCTTGATTGATAAGGAAGTAGATAGTTTAAGATTTTATATTCTTGGAAACAAATATAAAAATAAGGTTATTCATATTGGTGCCAGACCTAGTTTTGATGTAAATGATCCGTTGATTATTTAAGTGGTAGTTTATAAGGTGCGAACCAGAAGTGAACATAAATTCTCTGGGAGGTTCGCACCAGAAATTTGGGTGAAAAAGAATAATATTTAACAAGTGCCTACAAAGAACAGAAAGTAAAGCGGAAATAAGAATCATATTTCAATAGTCTTGTTTCTTATTTGCT # Right flank : TAACTGCTAAATTTTGGATAACCTTAGAATCATAGGGAAGATATGTTTCTTATTTGTAAACAGAAAACTTAATTGCGGAAAAAACTGTGATATACTAAGAACAAAGGAGTGATCCCAATGCAAGCAAAAAATGCACCACGTTATCAACAAATTGCAGCGGATATTGCTGCAAAAATTGCGGGTGGTGAATATAAAATTGGGGATAAAATTTTTGCGCGTTCTTCGTTAGCTTCACAATATCATGTTTCAAGCGAAACCGCCCGGCGTGCCATCTGCGTACTTTGTGATATGAAAATTGTTGAATCCATACAAGGGATAGGCGTTGTGATTCAATCTCCAGAAAATGCCGTAATGTATGTCAGACAATTTGATGAAGAGTATACGATATCGGCAATGAAAGAAGGGTTAATTGAATCACTGAATGAACAAAATTTAAGAAACAACGAAATAAAAAATCAGCTCGAAAGTTTGCTGGACACAGTTACGCGATTTAAGGCCTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCACGCAAGTGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.30,-8.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 4 93543-92299 **** Predicted by CRISPRDetect 2.4 *** >NZ_WKPL01000010.1 Holdemania massiliensis strain BIOML-A2 scaffold10_size103711, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 93542 33 100.0 33 ................................. ATACCGTAACGAACCGATTTCAAAGGCAATGAT 93476 33 100.0 33 ................................. CCCTGCATAATTATTCGGCGTGGCACTGACTTG 93410 33 100.0 34 ................................. GCCGTTACAGGAAGCGACGCTGTTAAAAGACCCG 93343 33 100.0 33 ................................. ACAAGGTATTCGATAAAAGCTTTGACGACTTTA 93277 33 100.0 34 ................................. TGGGTTGAAATTTTTATCGGCTATAATGGCGGGC 93210 33 100.0 35 ................................. ATTAAAAGACGGGGAAAAAGTAGTGATTGATGGCC 93142 33 100.0 35 ................................. CGGTGTGGCTGTGTTTAACCTGCGCAAAGGGGATT 93074 33 100.0 34 ................................. CCATTTGCTCATAATAGGATAATGATTTATCAAG 93007 33 100.0 35 ................................. ATGGCGCTGTTTGCGGATCTGAACGATGGGACGCC 92939 33 100.0 35 ................................. TGTAGAGGGATCAAAGTATTGGTTTAACTGCAATC 92871 33 100.0 33 ................................. AGACCGAGATAATTACAGATCAAACGCATCCGC 92805 33 100.0 35 ................................. GCCAAGCAGTACCTGGCGGCGGGTGGCAACTATTT 92737 33 100.0 34 ................................. ACTTATCGTTCATTGGAACGAATCGCGAAACTTG 92670 33 100.0 35 ................................. AAAAGATCAACAAGCCCAGATATTAAACCGCCTAA 92602 33 100.0 34 ................................. ACCACTTATATACATACGCCACTCTATAGACCAA 92535 33 100.0 34 ................................. TGTTTTGCTTTTTCGGATTCCAAATCAGAGTTAA 92468 33 100.0 34 ................................. AAGTAATGGCGGTTTTTGCGAATTTTATGGTGGC 92401 33 87.9 36 ........A.G..A.T................. AGTGTAAAGAGTGTGGCAACATCAGCACTGAAGTTA 92332 33 75.8 0 ..T..........A..T..T.T..C...A.G.. | T [92312] ========== ====== ====== ====== ================================= ==================================== ================== 19 33 98.1 34 GTCGCATCGCTCACGCGGTGCGTGGATTGAAAT # Left flank : GTTCAGCAATTTGAAAACAATCTGATTTATCCCCGAGTTGTAGGAAACTCAGTAGGCCTTCCAGGAATCTGGGTTCTGCTTTCCATCGTGGTGTTCGGCGGTTTATTGGGATTATTTGGCATGTTAATTGCTGTTCCAGCAACAGCCGTACTGTACACTTTATTAGGTGAATTCGTTAATAGCCGGATGCGGAAAAAAGGACAGGTTCTAGATGAGTCAGGCTTACTAAGTGTGAAGTCAAAGGTAAAAGAAGAAGCTTCACCTACTGCTGAGGATGAAATCAATTAAACTTTAAATATTAGAATTTCACTGCAAGGCTTTTAAAAGTCTTGCTTTTTTATACTTTAATCCAGTGCGAACCTGAGGTGAACATGAAATCCCTAGGAGGTTCGCACCGGAAATATGTGAAAAATGAAGAAAGTATTGTAAGTACAACGATGTTTAGTTATGATAGAGATACGATAAGAATCATATGGGTACCTTTTAGTTTCTTATTAACT # Right flank : TGTTCCATTTGTCTCTGTTAATTTACAAATCAGTATTGCTTAGCAGCTAACCAGTTCTTATCTCATTCAAGGATATACATCGAAAAAAGCCTGTCTTCATTTTAATATGAAAACAGGCTTTGCTACTTTTTCCAACTAATCTACATCTTGGTCTGCAACATTCCAAGGACGAATAACACAACCATCTGTTGTCGGTTCCGCAACATACACCTTCGCAGAATGATTCTGATCACTGACAACAAAGGCAAATTTGATATTGGTTCCAACACCCCAGCGGCCATCTTTATCTACACAGATTAAGGAAATCGCCTCAGCTTGTCCACGCTTACGAATCAACTTTTGGGTAAATTCCGCAACTAAAGTTGAGGCCGCCTCTTGGGGCTCCTGCCCCTGCTGCATTCTACGCACTACTTCATAGCTCAGACAGCCTTTCATAATTTCCTCGCCAACCCCCGTCGCTGCCGCGGCTCCAATATCGCTGTCTGCATAGAAACCACTTC # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCGCTCACGCGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCATCGCTCACGCGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.20,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //