Array 1 895-2243 **** Predicted by CRISPRDetect 2.4 *** >NZ_LEHQ01000043.1 Pseudomonas aeruginosa strain Pae_CF67.09l CF67.09l_contig_43, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 895 28 100.0 32 ............................ CAAAGCTCTGGTGTGGTTTGCTCGCACTCAAC 955 28 100.0 32 ............................ GTCTCGCGCACATGCGGAAACCAGCCGGCACG 1015 28 100.0 32 ............................ GATTCGGGGAACTCAAGCCGCTTGCTTTGCAT 1075 28 100.0 32 ............................ TGCTGGCGCTGATCAGTTGGAAAGGGCTTGCT 1135 28 100.0 32 ............................ TTCGAGGCCGACATGCTCGACCGCAGCAAGGT 1195 28 100.0 32 ............................ AATGGCAGCAGCGCGAAAAGCTCGCGGAGTTC 1255 28 100.0 32 ............................ TCGCCGATCAGCAAGATGGAGGCTTGGCTGGA 1315 28 100.0 32 ............................ CAGACCGGCATCGAGGCGCGTCGCGGCCATCG 1375 28 100.0 32 ............................ TGGAAGAACGCACTTGGACGGTCAGCATTGGC 1435 28 100.0 32 ............................ ACTCTGCGCCAGAGGTCAGCACCAGAAGATCA 1495 28 100.0 32 ............................ TATAACGATATTGATGCCGGATTTAGGCCAAG 1555 28 100.0 32 ............................ AGGTAGACGTCCTCGCCCACACCGATGTCGCG 1615 28 100.0 32 ............................ GTCCAGGCACGTTTGCTCGCGCTTTGATCTCA 1675 28 100.0 32 ............................ GAAAAGAGTTGACTGCACAGTGGGCATCACCT 1735 28 100.0 32 ............................ AATTGCAGGTGACCGACAGGCTTGCGGTACCA 1795 28 100.0 32 ............................ TTCTGCGCAAGTTGTTCCTCGGACATCCCCGG 1855 28 100.0 32 ............................ AGCTCGGTCGCCCCGGGGCGGCCGGCGTAGTA 1915 28 100.0 32 ............................ AGGTCGGGGATGGATCGAACCACCCGCGCGAC 1975 28 100.0 32 ............................ GTGCCCGGGGCCGACTCCGAACCCGACGAGCA 2035 28 100.0 32 ............................ TTGTCGCTGATATCGAAGGTGTCCCACTTCCG 2095 28 100.0 32 ............................ AGTAGCCGTCGGCGTTGTGACAAAGCCATTCC 2155 28 100.0 33 ............................ GCACGGTAGGTGCCGGCGCCCACGCCGGAGGCT 2216 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 23 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACACACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCACTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTTGCATCGCCCATCACAGGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCTACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 6348-6495 **** Predicted by CRISPRDetect 2.4 *** >NZ_LEHQ01000055.1 Pseudomonas aeruginosa strain Pae_CF67.09l CF67.09l_contig_55, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 6348 28 100.0 32 ............................ TGATCAAGAAGAACCCGATGGCGCCACTTGAG 6408 28 100.0 32 ............................ ATCCTATCGACGACAAAGTGCTCGAGCATCTC 6468 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 100.0 37 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTATAGGCAGCTAAGAAAGAAGAACATCGCTGCGGCGATCTGGGCCTCGCGTTCACTGCCGTATAGGCAGCTAAGAAAAGGGGTTCGTCCCTGGCCGAGGTGGCCCGCTCGTTCACTGCCGTATAGGCAGCTAAGAAAAGGAAACCAGAGCAGGAGGATGGACTATGACCGTTCACTGCCGTATAGGCAGCTAAGAAAGAGAACGATTCCGTCTTGTTGGAGCTTTCTGTGTTCACTGCCGTATAGGCAGCTAAGAAACGACGAGCAACTGCGCTTGCGCGTGCGTAACCGTTCACTGCCGTATAGGCAGCTAAGAAAGGAAGGCTGGCGCTCGAACGGATGTGTACAGGGTTCACTGCCGTATAGGCAGCTAAGAAATCCGGATCACCAGGGCGACAGATGGCCACCTCGTTCACTGCCGTATA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 6620-7544 **** Predicted by CRISPRDetect 2.4 *** >NZ_LEHQ01000055.1 Pseudomonas aeruginosa strain Pae_CF67.09l CF67.09l_contig_55, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 6620 28 100.0 32 ............................ AGGGGTTCGTCCCTGGCCGAGGTGGCCCGCTC 6680 28 100.0 32 ............................ AGGAAACCAGAGCAGGAGGATGGACTATGACC 6740 28 100.0 32 ............................ GAGAACGATTCCGTCTTGTTGGAGCTTTCTGT 6800 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 6860 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 6920 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 6980 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 7041 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 7101 28 100.0 32 ............................ TGGCGCCGCCCGATTTCACGTAGCTGCTCGAT 7161 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCGCTGGCGG 7221 28 100.0 32 ............................ TGATTTCGAAGGCCGCGGGCGACTGATCCGGA 7281 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 7341 28 100.0 32 ............................ TGTCCGGTCCCGGAAAAGACCAACGCGGGAGT 7401 28 100.0 32 ............................ TCTACGAGCAGACCGAGTTGAAAGGACAGGAG 7461 28 100.0 28 ............................ GAGTGTGAGGCCGGGCAAACGGATTTGT 7517 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 16 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : TGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTAGTTCACTGCCGTATAGGCAGCTAAGAAATGATCAAGAAGAACCCGATGGCGCCACTTGAGGTTCACTGCCGTATAGGCAGCTAAGAAAATCCTATCGACGACAAAGTGCTCGAGCATCTCGTTCACTGCCGTATAGGCAGCTAAGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTATAGGCAGCTAAGAAAGAAGAACATCGCTGCGGCGATCTGGGCCTCGC # Right flank : | # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [36.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 52-319 **** Predicted by CRISPRDetect 2.4 *** >NZ_LEHQ01000059.1 Pseudomonas aeruginosa strain Pae_CF67.09l CF67.09l_contig_59, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 52 28 100.0 32 ............................ CGCAACGTTCGTGATCTGCCGTTCGCCGCCCA 112 28 100.0 32 ............................ TCGGCGAGGCGATCGATCATGCGAATCAGCAA 172 28 100.0 32 ............................ ATCGACCACGACAGTGCTTCCCTGGTCTATTC 232 28 100.0 32 ............................ ATTGGCCGTGCAAGGTCCACCAGTCGATGCTT 292 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 5 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGTATAGGCAGCTAAGAAAACGTCGGAACGCAACTACCTGACCGCGTTGGTG # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAACAGCTTGAGCAGCAAACATGAAGCCCGCTCGAACGTCCCGTAGGGCGAATACCGCCACAGGCGGTATCCGCCGATACCCCGGATAAGCGGCGG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [40.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //