Array 1 609581-611133 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP068103.1 Peptoniphilus harei strain FDAARGOS_1136 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 609581 28 82.1 32 AA..T.A....A................ TATCATTTCTACCGCCTATTAGAGTATGGGGT 609641 28 89.3 33 .A........C....G............ ATGGATTGGCTGTTTGTACTGGCTACTCTAACA 609702 28 89.3 33 .A........C....G............ TATTCTTTCTCCACCAATTCATCTTCAATTTCA 609763 28 96.4 33 ...............G............ AACTTGGGGTCGCTGTCAAGTATCAAAGTTATA 609824 28 96.4 33 ...............G............ AGGATCAGGCGCAGGGAAATAGTTTATATTTTG 609885 28 89.3 33 ..........C..C.G............ TGTGTTTCTTTTATCCTCTTCCTTAGCTTGGGA 609946 28 89.3 33 ..........C..C.G............ GATGCTGGTCCCATCACTATTCGGTCTTTTAAA 610007 28 100.0 33 ............................ CTACGATGTCGAAGCACCCACAATAAGATATCA 610068 28 100.0 33 ............................ TCTTCTCCATCAAATCTTACTTTAGCAGTCCCA 610129 28 100.0 33 ............................ TCATAGTGCCTAACTACTCTATTTAATGGTATA 610190 28 100.0 33 ............................ CTGTCAAATCATTAACCCTAGTATTTACACCAG 610251 28 100.0 33 ............................ CAAAAATCTTCCTGTATTTAAAAGTACCATCCA 610312 28 100.0 33 ............................ ATTAGGATTGTACTTGCAGATGAGGTTGACAGG 610373 28 100.0 33 ............................ AACAATTCATTATTTTCTTCTAAATATAACCTA 610434 28 100.0 33 ............................ ACAAGGTTGAGTTTGGCTTATCAAATGTACACG 610495 28 100.0 33 ............................ TTTCGTTCACACTTGGAGATGATATGCCACTCA 610556 28 100.0 33 ............................ TAGTTTTTTCTTTATCTCCCTTACCTTCGAAGA 610617 28 100.0 33 ............................ TCCCAGGCTTCTCCAGTCTTTTCAGAAAATTCA 610678 28 100.0 33 ............................ GAATATTCTAAAAAAGAATCAAAGGAAGAATTA 610739 28 100.0 33 ............................ ATAAACAAGATATCTTGATGTCCGTATCCATCA 610800 28 100.0 33 ............................ CACCAACTCTTCTTTCAAGTTCTGCCACTGTCA 610861 28 100.0 33 ............................ CTATACAAGTGTGCCCAGAACTTTCTAATCCCA 610922 28 100.0 33 ............................ CTATTCTTTTAATGGGAAGTTATATCAATCAGA 610983 28 100.0 33 ............................ AGACACTATCCCGCAACCATCGTTATTCATTTG 611044 28 100.0 34 ............................ CTATCCTGTAAAGCATCAACTGTATTTGAATTGA 611106 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 26 28 97.4 33 GGATCACCCCTGCATATGCGGGGACTAC # Left flank : CTAAATCATTAAATAAATCCCAATCATTGTTGGAAGCTTCAGCAAATAAGACCTTCTCTATTTCTTTAAAAAAATCATCAATTATACTCATAAGCTTATTGCACTCCTCCCTGAAAACAAAATTTACTATATAAGCTTTAAAACAAAAACACCCCAACTTAAATGTTAGTGTACCTTATTAGCTTCTTTTATCTTGTCTAGTATCCTCTCTATCCTGACTAATCTTTCTTGATTATCTCCACCTGATTCTAGTTCCACTATTTCTGTTTGCAGATCAAAACCTAGTTGAGCCACCTCGTCGTTTTTCTTATTAATTTCATCGAAGTTATCTAAAAAGAAGCTTTCAAGCCCGCCAATGCTACGGACTGCATCTTCATTATCAAATCTTTCCAGACCGCCTTCTATTTCCTTTATGAACATATCAATTATTTTTTTCATAATCTTTTCTCACCTTTCTTTTTTTTTCTTTGGAGATAACTTTAACAACTTCCATTTTTGTA # Right flank : CACTTAAAAGATCCCGTAACTATCTCATTTCCATTATAAAATATCCCATAATTTATTCACTTTATGAATTAATTTTTCTTCCAGAATTGCATCTTCAAGAGCTCTGTGAGGAACTTTTTCATCAATGCCATAGGATTTTAAAACAGTTTCTAGCTTGTAGTTATTCAAAAATAAGTTATCTTTTTTTACAAACTGCATGATATCATAAACTTTATTATTTATTTTTGCCAAGCCTTCTTTTTCTAATGAGGAGTTTAAAAATTTTATATCGAAAGCAACATTATACCCTAGTATTATTGTGTCACCAATAAAATCAATAAACTCTTCTAATGCTCTTTTTAGTGGAATTCCTTTTTCCTCTAGCATTTCATCGTCAATTCTTGTTAAACTTTTTATTTCTTCTGGTAATTTTCCTTCAATTCTTATAAATCTTTGAAAGTTTTCTTGTTTTTCTCCAACTTTTACTACTCCAATCTCTATTATATTATCATTGAAAGGAT # Questionable array : NO Score: 3.13 # Score Detail : 1:0, 2:0, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGATCACCCCTGCATATGCGGGGACTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.10,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.41 Confidence: LOW] # Array family : NA // Array 2 1171253-1174626 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP068103.1 Peptoniphilus harei strain FDAARGOS_1136 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 1171253 32 100.0 35 ................................ TTGATAATCAGACCATGTATCTGACTCATCTTTAA 1171320 32 100.0 34 ................................ ATATTAAGACTACTCAATATGTATTTTGTAGAAC 1171386 32 100.0 34 ................................ GCTTGATCCCCGCACCGCCAGGATACCTGGGAGC 1171452 32 100.0 37 ................................ CTGGGAGCAATACCTATCAAATCTTATCAGCGACCAG 1171521 32 100.0 35 ................................ TTTTTATTCTTGCATATTGGACTTTTACATTTAGT 1171588 32 100.0 35 ................................ AAGTTATAGTTTAAATTATTCATGTCACAAACCTT 1171655 32 100.0 34 ................................ TCTTATGACGACCTCACAATAAAAAATAAATGGA 1171721 32 100.0 34 ................................ CCTTTCAGGTGCTGACTGGTGCTTTGAAAGACTT 1171787 32 100.0 35 ................................ TCTACCCATGCCCATTTATCCTCGATAGTTTTTTC 1171854 32 100.0 34 ................................ TATGCTCCCCATTTAAAAGTTTGGCATAGTCAAG 1171920 32 100.0 36 ................................ TTATCAAGAGAATGTATTTATAGGCTTTTTTGCCCT 1171988 32 96.9 35 ..........A..................... TCTACCCATGCCCATTTATCCTCGATAGTTTTTTC 1172055 32 100.0 34 ................................ TATGCTCCCCATTTAAAAGTTTGGCATAGTCAAG 1172121 32 100.0 34 ................................ GCCTGATCCTGCGGAAAGGCTCGGTCAATAGCTT 1172187 32 100.0 34 ................................ AAATCTGAAAATAAGGCTCAATCCTACCGCCGTT 1172253 32 100.0 35 ................................ CATAACATCGTCCATTATTCCTTTAAATGTAAGAA 1172320 32 100.0 34 ................................ GTCTTACTTGCAAACTCTAAAACATCATCTACAT 1172386 32 100.0 35 ................................ TAAAAAGTTATAATCTTACATTTATAAACCTTGAA 1172453 32 100.0 35 ................................ AAGAGTTGGAGGGTCGACTGTACCTGCCATTACTG 1172520 32 100.0 35 ................................ TTTAGAAGAACTAAAAGCGACCTTGACAACTTGGA 1172587 32 100.0 36 ................................ AATTCTCTATCAATGGAGTTATGTATTAATAGCGAT 1172655 32 100.0 35 ................................ AAAAAATCTTCCAAACGTGGTGGGAAATGGATATA 1172722 32 100.0 34 ................................ AAAAAGATTATAAGAATTATAGCTTCGGACCAAT 1172788 32 100.0 34 ................................ TTTCGTCCTTCGTAAATTCCTCAGTGCAGAATTA 1172854 32 100.0 35 ................................ TCTTACCTCTGGGAGGTCTGCTCTTCTAAGTTCTC 1172921 32 100.0 34 ................................ AAATACATTTGACCTTGTTGCTCAAAAATATCTC 1172987 32 100.0 34 ................................ GGTTTCTCCTGCGGCTATGTTGTCAAAGTCCAAA 1173053 32 100.0 34 ................................ AAACAGAAAGCTACAAGGTATTTTCTCCAAAGTG 1173119 32 100.0 36 ................................ CAATTAGGGCTACAAGCCTTAGCTATAACTTGCCAA 1173187 32 100.0 36 ................................ TATTCTATGTCCTAACTGTAATGTGTGGCTTAAGGC 1173255 32 100.0 35 ................................ CTGATAAAATTTCACCTGAATCTTTTAATCTATTT 1173322 32 100.0 34 ................................ CGTCAATTAAAACTTTTTTGTCCTCGTGGTTTGC 1173388 32 100.0 36 ................................ AATTTTAGAGGAGATAGCCTTGATGTAGCTATCCCC 1173456 32 100.0 35 ................................ CATTTTCCATGGGAATTTTTATAAGATACAATTCC 1173523 32 100.0 34 ................................ TTCGCAATTAGAAACGTGTATATATTTATCATAC 1173589 32 100.0 35 ................................ ATCAGTCTTGCCGACTCTATCAGTCCAGACTTGGA 1173656 32 100.0 35 ................................ TTTGATACTGAAGATAAAGATATACTGGCATTAAC 1173723 32 100.0 35 ................................ CATTTTCCATGGGAATTTTTATAAGATACAATTCC 1173790 32 100.0 34 ................................ TACTCTTGAAGTTCTAGATATTTTTGAGGTATAA 1173856 32 81.2 37 .......C..ATAC.G................ AGTACAAGTAACAGGTATTATTGCCGCTTGTGCACCT 1173925 32 84.4 36 ..........ATAC.G................ TAATGCACGTAAATCACGCACATTAGATCAAAATAA 1173993 32 81.2 35 .......C..ATAC.G................ AAATCGTCGAAAATCAATTGAAAGATAATGAAGAC 1174060 32 81.2 35 .......C..ATAC.G................ ATAAGTAGGTCATAAGGTATTTCCAAAGATGCCCC 1174127 32 81.2 35 .......C..ATAC.G................ GAACTAACTCACAGTAGGGAAGAGTTTATAAGGAT 1174194 32 81.2 34 .......C..ATAC.G................ TCACAGATTAAATTATCAATATCTTTTGTAATTT 1174260 32 81.2 35 .......C..ATAC.G................ TCTAATATACATTAGTGTAGTATTATAGGACTCAT 1174327 32 81.2 34 .......C.TT.AC.G................ AGGTGTGAGGTTTTTGTTTGCTCTATAAAGTACA 1174393 32 84.4 36 .......C..T.AC.G................ TGTCATGTACGCTCCGTGTTTTCTTATGGTTGGTAA 1174461 32 81.2 36 .......C.TA.AC.G................ GCTTGATCCCCGCACCGCCAAGAGGCCAAGGGACCA 1174529 32 100.0 34 ................................ GTCTGAAGCCGAACCCCACCCAAAAGCAAAACTA 1174595 32 68.8 0 ....A..C.TT.AC.G...T....T..T.... | ========== ====== ====== ====== ================================ ===================================== ================== 51 32 95.8 35 GTCGCACTCCCCGTGAGTGCGTGGATTGAAAT # Left flank : TCCCTCATGTACAGGCCCTTTTATTAAACTCTTACCTAAGAGGAGATATAGAAGCCTATCCACCCTTTATGATAGGAGGATAAAATGCAAGTGCTGATTACTTACGATGTAGAGACGATAACGCCAGCTGGCAAGAAAAGATTGAGACAAGTTGCAAAAGTATGCCTTGATTATGGACAAAGAGTACAGAACTCAGTATTCGAACTAAACATATATCCAGCTGACTTAGTAGAAATAAAAAATAAATTAGAAAAAATAATAGATCCCCAAAAAGATTCCATAAGAATTTATAATTTAGGGAAAAATTGGGAAAGAAGAGTGGAAAGTCTAGGGAGAGATGACACCTATAACCCAGAAAAAGACTTGTTAATATTATGAGACTTGGACCTGGACATAAAAAGTATAGACCTAACTCACAAAAAACAAAGAAAAAAGAGACAAAACTCTTCAAAAAATGATTAGCTGTATTTTTTACTAGGAGATAATGGCTAAAAAATACA # Right flank : TGATCAATATTCTTAAGGAGATATAATAATATTATGAAAAATATCAAAGATTTAGAAGATGATTATATTGAGAGGTTTGGAGATTTATTCCCAACAATAGGTATATCAAGAGATTATGAAAAAGAGATAATATTAATTTGTTTAGCTAAGGACAAAGATGCGTATGGGTTAGGATATTTTGATTTAGAAAAATGCTATTAAAAGTATGACGTAAATTATTCTAGGGTTGTAGTGATTGGAATTGGTGCTGAATATGAGATATTGCACCGTTTAAGATATCATCTCTTTAGATCGAATCTTTAAAAGTGTGTGTGGATTGAAATTTTGGTATCATCAAGAATTAAGTTCATAGTAGTTTGTCGTACTCTTCACGGGTGCATGAATTGATATAAGAAATGGAGATGATAATATTGAAAGAATTGAAAACATCTGAGGCACAAAGACGAGCAACGAAGAAGTGGGAACAGAATAACCCGGAGTCTAAAAGATATAGTCGTAAT # Questionable array : NO Score: 9.05 # Score Detail : 1:0, 2:3, 3:3, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCCCGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTTCGTGAGTGCGTGGGTTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.00,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-38] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 1174984-1175674 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP068103.1 Peptoniphilus harei strain FDAARGOS_1136 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================================================================================================================================================================================================================== ================== 1174984 32 84.4 227 ....T..T............A..A.....T.. AAGAAATGGAGATGATAATATTGAAAGAATTGAAAACATCTGAGGCACAAAGACGAGCAACGAAGAAGTGGGAACAGAATAACCCGGAGTCTAAAAGATATAGTCGTAATAAGGGTAATGCGAGAACATTTGCGAGGAAATATGCAAAGACTTTGGAAGAAGTAGAAGAGTTGGTAGAGATTTTCAAAAATGAAAACCCTAACTATAAAAAATAAAAGGTAAATTTA 1175243 31 75.0 35 .C..T....A.-GT.A......A......... ATGTCCCTTTTCTACAGTAGTATCTTTAGACTCAT T [1175250] 1175310 32 96.9 34 ..........A..................... AAAGATTTAAAAAAAGCTACATGCGATATTGACG 1175376 32 96.9 34 ............G................... TTTCATACTGTATAATCACCTCTTGATTGAACAA 1175442 32 100.0 34 ................................ ATTGGGAAGATTCTGAAGGATTTAATATTTTACA 1175508 32 96.9 35 ..........A..................... CCAACTATATGTTGGAAGACGCCATAAAAATGAGA 1175575 32 93.8 36 .............T.................C AATGGCCGACTCTTTGCAGTACAAGGCGACACTGGA 1175643 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================================================================================================================================================================================================================== ================== 8 32 93.0 62 GTCGCACCCTTCACGGGTGCGTGGATTGAAAT # Left flank : GATTGAAATGCTTGATCCCCGCACCGCCAAGAGGCCAAGGGACCAGTCGCACTCCCCGTGAGTGCGTGGATTGAAATGTCTGAAGCCGAACCCCACCCAAAAGCAAAACTAGTCGAACCCTTCACGGGTGTGTGGTTTTAAATGATCAATATTCTTAAGGAGATATAATAATATTATGAAAAATATCAAAGATTTAGAAGATGATTATATTGAGAGGTTTGGAGATTTATTCCCAACAATAGGTATATCAAGAGATTATGAAAAAGAGATAATATTAATTTGTTTAGCTAAGGACAAAGATGCGTATGGGTTAGGATATTTTGATTTAGAAAAATGCTATTAAAAGTATGACGTAAATTATTCTAGGGTTGTAGTGATTGGAATTGGTGCTGAATATGAGATATTGCACCGTTTAAGATATCATCTCTTTAGATCGAATCTTTAAAAGTGTGTGTGGATTGAAATTTTGGTATCATCAAGAATTAAGTTCATAGTAGTTT # Right flank : TTTGGGTTCAAGTCCCATCCTTAGCACCATTTTTGTCGCAAACTTTATTATGAAGAAATTAAAATATTTTAAAAATATGCCTAACCTAAAATTTTTAGGTTAGGTTTTTTGTTGTTAAAAATTTTAAAGATTAAATAGAAATTAGTTAATGCTAAGTAATATTAGCTTATGAAATTTATTCTGGAGAAGCTAAAATTATTCAAGTAATTAGTATAAAGTTAAGGATTTTTACTAAGTCATTAGGAGATATGATTTGGAAAATTATTATGATGTTGAAAATTATTAGGAATTTATAAAAAATTATGAAGTAGAAAAATTTTATGAAGTTGTAAATAATTATGAAGTTAAAAAATTTTATTAAGTTGCAAAAAAACATATAGTGGAAAGTTATTATGAAGTCATTAAAGGATAAGATGTAGAAAATTTTATCATTTTATAAAAATTATTAATTTATAATAGAAGAAAGTTACAAGACCCTATAAATAAATCTAACAATCTTG # Questionable array : NO Score: 8.53 # Score Detail : 1:0, 2:3, 3:3, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTCACGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,1.15 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //