Array 1 40-1146 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEWU01000002.1 Ignatzschineria cameli strain UAE-HKU59 NODE_2_length_416678_cov_204.393899, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 40 28 100.0 32 ............................ TTCGCCGTCAACCAATACAGATACCTGGCTAC 100 28 100.0 32 ............................ GTACGGGCTTAAATTTAGCCAATCATTTGAGC 160 28 100.0 32 ............................ TAATAGCAATCAATTCTTATCTCCTCTCGATC 220 28 100.0 32 ............................ AACGCTTGATGACTTGGTGTGTGGGTAATGCG 280 28 100.0 32 ............................ TTCGCCGTCAACCAATACAGATACCTGGCTAC 340 28 100.0 32 ............................ ATGTGAACCACAGCTCGCTGTCGGCCTTTCTG 400 28 100.0 32 ............................ ACCATTCATTAGATACAATCGTTACCGTATAA 460 28 100.0 32 ............................ TAACTAATATCGAGAAGATCGAAGGCGGTAGT 520 28 100.0 32 ............................ TCATCGAATGACTTAATAAAATCTATCCCATC 580 28 100.0 32 ............................ AAACTTTCCTGAGCCGGCAACTCTCGGCGATA 640 28 100.0 32 ............................ ACGTACGCCGGCGCAACCGAGCGATGGCCGCC 700 28 100.0 32 ............................ CACGTATCACAAGAGAAGACATCTTCATTGCC 760 28 96.4 32 .............T.............. AAAAGAAAGTTAAGAATTGATACAGCAGAATC 820 28 96.4 32 .............T.............. TTGCGGATAAAACTTCCGCGGTTGTAGAAGAG 880 28 100.0 32 ............................ ATATTAGGGTCGGCTAACTTCAATATAAATTT 940 28 100.0 32 ............................ TATTATCTTTCTCACTACTAAAGAGTCTCCAA 1000 28 96.4 32 ..................A......... AATTCCTGATTCTGTAGCTGTAGAGCGTTGAC 1060 28 85.7 32 ...CG.T...........A......... TTTGGCGGGTAGGGCTTTTCGCCTTTCCCTTC 1120 27 71.4 0 ...CG.T.T.........A.T...-..G | ========== ====== ====== ====== ============================ ================================ ================== 19 28 97.2 32 GTTAACCGCCGCACAGGCGGCTTAGAAA # Left flank : TTAGAAAAACGCTTGATGACTTGGTGTGTGGGTAATGCGG # Right flank : GTTTCGGCGGAAAAGGAGTCCGTCGATGCTTTGGTACAGTAGCATTTGGGGCAAGTAGATAGAAAAAAGGCCGTTAATATAACGGCCTTCTTTTTAGGTTTAATCTGATATTTTTTATCAGAGATCAAGTCTTAATCAGCAATTAAATGATTAATGCTTGATTAGAATGGAGCGTCGATATCGACAACATCAACGAGTTTGATATTAACGAACTCTTTAAGACCTAAGTCGATCAATTCACGACCATATCCTGAACGGCGGATACCACCGAATGGGAGATCTGCTTTAACCATGGTTGGGTGGTTAACAAATACCATTCCTGTTGAGATTTGGTTTGCAACACGACGGCCACGCTCATTATCTGAAGTGAATACTGATCCACCTAAACCAAATGGTGAGTCATTAGCAATGCGAATCGCATCAGCTTCATCTTCTGCTTTAATGATCATCGATACAGGACCGAAGAACTCTTGGTAGTATGCTGGGTTATCAGGCGTTAC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACCGCCGCACAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACCGCCGCACAGGCGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 99506-98998 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEWU01000003.1 Ignatzschineria cameli strain UAE-HKU59 NODE_3_length_321057_cov_210.008329, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 99505 28 96.4 32 A........................... CTAAGCGGTGTAAGGATTAATGATTTAAAAGA 99445 28 96.4 32 A........................... TGTATCTACAATTGCGCATCTCTTTAAAGCAT 99385 28 100.0 32 ............................ TTATTTTTAGCGCCACCCATCACCCCAACTCT 99325 28 100.0 32 ............................ TTGGAAGTTAAAATCCCCGCTTTCAGACTGAA 99265 28 100.0 32 ............................ TATTATCGCCGCTCCCAATACAGGGAGAAGCT 99205 28 100.0 32 ............................ TGTTTCTTGACTGTGAATCTATTGTAGCTAAT 99145 28 100.0 32 ............................ TGAAGGAGACTCAACATCATCAAAGCCGGCTT 99085 28 100.0 32 ............................ AAATTTGAACGATTTAACTTTTTAGGTAGTTA 99025 28 96.4 0 .........................G.. | ========== ====== ====== ====== ============================ ================================ ================== 9 28 98.8 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TCTCTTCAGGACAGCCAATCATCACCCATATTGCCTTAAAGCCAACCTCAAGCTTACGTCTCGAAGGTCGCACTGTCGATACTGAGGGAAATGAGACTTCGGTCATTACCAAAGGTCGACACGATCCTTGTGTTGGAATCCGTGCAACACCCATTGCTGAAGCAATGTTAGCGATCACTCTACTCGATCATGCCCTTCGCCATCGCGGACAAACAGGAAGATAATACTCTTCTTAAAATCACTTGATGGACAATTGAAAATCAATTAGGCTTCAATAGAAGCAGATATTCATTCACCATCTAAAAAAAATTATAAAAGTAACTATACAAAAAAGGATTAATCTGCTTATCGCTTACTCATCCTTTTTTAACCTTTATTTTAAGCTCTTTAAAAAATTAAACTAAAATCAATGAGTTAGATAAAAGAGGAAAATAATAGGTTTTAAGGAGCAAACAACCCTAAACTTCGATTTTTCCTCTCTTTTAACGTTTTAACTCACT # Right flank : TATTTTCCTCTGGAAGGAACTATTCACTATTCAATTGCTATTCACCGCCACATAAGTGGCTTGAAGATATTAGATAATCAAGTAGGATTAATTAATTTCAAATAGATAAATTTCAAATAGATAAACTTCTCTATAAAAATAAAAAAGATCCTAAAATCAATCTCTAATAGATCTCTAATATAGTATTAATGCCCTAATAATCATAAGGCTGATAGAATCGGGATATTGACCTCATGAGTTCATTACTCTAAGGTGAAAGAGATAATATTATAGGGATAGAGAGAAATGATCAGAAACTTCAAGATTCGCAGCCTCTTTTTAATGCTTCTTCTACTCTTTTCGATGGGACTTTCCCCTTTAATGGCGGAAGATACACCGATCGAAGAGCGTACCGAAAAACTCAATGATATTGAATTAAAACTTGAGGATATTCTTGCAAGAAAGAAATCCCTTCAAAGTCAGCTCAAAGATAAAGCGCTCTCGGAAGAGGAGGTCGCTGA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 314850-321057 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEWU01000003.1 Ignatzschineria cameli strain UAE-HKU59 NODE_3_length_321057_cov_210.008329, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 314850 28 100.0 32 ............................ AAAGCAACAAAATAAATGTATAAAGATTGATC 314910 28 100.0 32 ............................ TGTTTGAGCAGATTGGTGACTTCCCCAGCTGG 314970 28 100.0 32 ............................ TCTGGTGAATATCGAGGATCCCCACTACTTAA 315030 28 100.0 32 ............................ ACTCGATCAGGGGAGCCTCTTAAGGTTCGAGG 315090 28 100.0 32 ............................ TTCCCCGTCCGACGACTCAAACTATAGCAAGG 315150 28 100.0 32 ............................ AGAGCATGGAGAAAGTCCTAGGGCATGTCCCA 315210 28 100.0 32 ............................ ATAGGTGACTTATCGTCATAATTAATAGACTC 315270 28 100.0 32 ............................ TAAGGGGTTAGGGCGCGTCCCAGAGCATGCCC 315330 28 100.0 32 ............................ TGATTCAGATAGATTGTTGAATGATTCTGTTA 315390 28 100.0 32 ............................ ACTTATCAGGCTGTCTGTTGCGAAGCCAGAAA 315450 28 100.0 32 ............................ AGATTATTTTGCTCTTTTGTATGGGCTAAATC 315510 28 100.0 32 ............................ GAAGCAGGATCGACAAGAGTCCTTAGAGCAAA 315570 28 100.0 32 ............................ TATTTTCGCTTATGGCGTGCTTTTCCCTTAAA 315630 28 100.0 32 ............................ CCTTATTTTGCTCCGTATTTGTTTTTTGCTCT 315690 28 100.0 32 ............................ TTGATTACAGCAGACAACGGATAGCCTTTAGC 315750 28 100.0 32 ............................ TTGTTCGTTTTTATAGAATCGCTCACTATAAA 315810 28 100.0 32 ............................ TGATACAAAAAACAAGAAATGATAATATAGAA 315870 28 100.0 32 ............................ TGATTTGATTCCATCAGTTTTGAGATCTGATC 315930 28 100.0 32 ............................ TTTTGCCCCCCTCACGGGGTAGCTTATCTTTT 315990 28 100.0 32 ............................ AAACACACGGGACTGGGTGGAAGAATCAAGTA 316050 28 100.0 32 ............................ CATGTATCGCAACCTAACCAAGAATAAATAAA 316110 28 100.0 32 ............................ TATAACTATCCCCTTCTCCGACTCCTGAATAT 316170 28 100.0 32 ............................ ACGAGCTGAAGATTTCATAAAGTCGAGTACTG 316230 28 100.0 32 ............................ CATTGCAATCAGGGCGATTTGAAGCCGATATA 316290 28 100.0 32 ............................ GCATAGCTCGCATTTTTTCATATTAAATTTCC 316350 28 100.0 32 ............................ TTCTTATCTCTTTCGAGGGATTCGCGGGCATC 316410 28 100.0 32 ............................ CACGTGCCCCCATAAAGGCGTTAGTATCCGCT 316470 28 100.0 32 ............................ TGTAGCCACTCCTCGATTGCATCATGGGCATG 316530 28 100.0 32 ............................ ATCATGGCCGCATTGGATTGGGTCTATAGAAG 316590 28 100.0 32 ............................ ACATGTTAACCGCTATGAAGCAATGGCTAAAG 316650 28 100.0 32 ............................ GTTTACGAATTTATTCCCACGTGCCCCTATAA 316710 28 100.0 32 ............................ TCGTTGAAGATGTTCGATACTTCGCTTGTAAT 316770 28 100.0 32 ............................ TTTCGGTTCGTTTCCCGCTGTTGATGAGTCAA 316830 28 100.0 32 ............................ CCAGAGCATGACCCAAAGTATGGATAAAGTCC 316890 28 100.0 32 ............................ ACAATCTTAAACTCACCGAGCGTAGTCTAGTA 316950 28 100.0 32 ............................ CCGCTGTTGATGAGTCAAATATAGCAACACCC 317010 28 100.0 32 ............................ ACTAGCTAAAAATAGACCTCTTCCAACAATGA 317070 28 100.0 32 ............................ TTTTGATTTAACGCTTTTAGGTGTTGAAAATG 317130 28 100.0 32 ............................ AATATTTTTAGAGAATGGGAAGAACAGGAGGG 317190 28 100.0 32 ............................ AATGGTAGAACCTATTACATTGGCAAAAGTCG 317250 28 100.0 32 ............................ TTGTAAGGGGAAACCCCTTAACCCCTTTTAAA 317310 28 100.0 32 ............................ CTTAATAAAATCAAGGGAAGATTAATCCTCCC 317370 28 100.0 32 ............................ ATTAGCACTGATTTGCTTGCAAGTCGTAAGTG 317430 28 100.0 32 ............................ TTTAAGAATGATTCCTTTTTCAATAAGATTTC 317490 28 100.0 32 ............................ CAAGGCTTGCGGGCGAATCAGTGACTGCCAAA 317550 28 100.0 32 ............................ TTGATGAAAATGAGGGAAGGGCATTTTGGATA 317610 28 100.0 32 ............................ GGAGATGAGATACCAGGCACAGACATGGTTGT 317670 28 100.0 32 ............................ ATTTTAAAAGAGGACCAATCACGGGAATATTT 317730 28 100.0 32 ............................ GCTTGCGTCGGGATAGATCTTAATCGCATGAC 317790 28 100.0 32 ............................ TACCCGATCTTCTTAAAGAGCATGGCGCAACC 317850 28 100.0 32 ............................ GATCCTAAAGCAGAAGAGATCTGGATCGTGGA 317910 28 100.0 32 ............................ ATTCGGTAGCGCAAATCGAACAGTTGCCGAGC 317970 28 100.0 32 ............................ TCTGGAGTTTATAAGATTCTGCTCAATGCTAT 318030 28 100.0 32 ............................ GCCGCTGCAATCTGGTACAGAGATAACGCCGG 318090 28 100.0 32 ............................ TAGATAGCTGCAAAAGAGATCTGCCGGAAAAT 318150 28 100.0 32 ............................ GGTTGAGCTTGATGAGTTCTGGTATCTCTACG 318210 28 100.0 32 ............................ TGCTAATTTAGGATTTTCTTTAATCCAGTCAC 318270 28 100.0 32 ............................ TTAATCGGTTCTTCAACCGCAGCAATAATGCT 318330 28 100.0 32 ............................ CATCATTAAATAAGGCATGTTCACTGCTTACA 318390 28 100.0 32 ............................ TGGTCTTTTGAAACTGTGCAGTTCCAAGAATT 318450 28 100.0 32 ............................ GCTACTTACATAAACAACATCGTCGGCATTCT 318510 28 100.0 32 ............................ TCTCGCTAAAGTCTTTGAGCATCTCGCTCGAT 318570 28 100.0 32 ............................ ATCTGAGCCGAGCATGATTCCGCCGATTGCGC 318630 28 100.0 32 ............................ CACTTAGACTGCACCCATGATGAACCTTGATA 318690 28 100.0 32 ............................ ATATGTTTTCTAATCTTTCATTAATAGCTTGA 318750 28 100.0 32 ............................ TCTTTCAATCTCTATTTTTTCTTTGTCTATAT 318810 28 100.0 32 ............................ TTGTTTGTAGATATCGAAAAACTAGAAGAGGG 318870 28 100.0 32 ............................ CTTATCTTGAGCAGATCAAAGCAGAAGTTGAA 318930 28 100.0 32 ............................ TGTTCGCTCGAGGTGTACGCTATCGAGAGATC 318990 28 100.0 32 ............................ GGCTACAGCGACGCTCTTAAGCGCATCGCATT 319050 28 100.0 32 ............................ GTGGACCGTTCAATGCGATAGAGAATCGAACT 319110 28 100.0 32 ............................ TTTAAAATAGAGTTTCGTTGATTGCGCTCTCA 319170 28 100.0 32 ............................ AATCACTAATGCATCAAGGTTTGCATAATCAC 319230 28 100.0 32 ............................ GATTGGCTCGCTCGAGCAATTGTGGATTACCC 319290 28 100.0 32 ............................ GCCGCTGCAATCTGGTACAGAGATAACGCCGG 319350 28 100.0 32 ............................ TAGATAGCTGCAAAAGAGATCTGCCGGAAAAT 319410 28 100.0 32 ............................ GCAATGTCCTTCAGCGTTAAAACCCGTGATGC 319470 28 96.4 32 ..........A................. TCAATACGATTCATATCGCTTGCGCCGGGAAG 319530 28 100.0 32 ............................ ACCCAGATGGCAATCCCTATCTCTCAACTGCT 319590 28 100.0 32 ............................ ATGGTTTGTGGTTTGGTCTTTTGGTATGGTAC 319650 28 100.0 32 ............................ CATGGTTGCCACGTCGGGCATAGTTGTGGGCA 319710 28 100.0 32 ............................ TCGAGAGCATCATAATACTGCCTCTCGCTTAT 319770 28 96.4 32 .............T.............. TTGATGCTCTCTGACTTAGCTTGGTGATCTGT 319830 28 96.4 32 .............T.............. TTAAGGTAGGCCAGAAAACCTCTTATAGTATC 319890 28 96.4 32 .............T.............. TTTTGCCGTTTGATTTTAAAAAAGCGCTTTAA 319950 28 96.4 32 .............T.............. TTGTAAGATGATTCCCTCTTTTATTAAACGTT 320010 28 96.4 32 .............T.............. TATTGCTTGAATTTCAAATACAGACTCTTCTA 320070 28 96.4 32 .............T.............. GATTTGAAAAAGGTTTTAATAGAAAGAGATAA 320130 28 96.4 32 .............T.............. TTTAACGAAAGCCTCTGGACGGTAGACTGCAA 320190 28 96.4 32 .............T.............. CTTTACCCCTTAGACGCTCGGCGCTTGCCAGA 320250 28 96.4 32 .............T.............. TTTTTGTGCAGCTGCTTCTGCGCTCTTAATAA 320310 28 92.9 32 ............GT.............. AAATCGATTGCGGATATGCTCCATAGGTGAGC 320370 28 96.4 32 .............T.............. TATTTCATACACGAGAACTATAAATAGAGGTG 320430 28 96.4 32 .............T.............. GCAACTGTCTTCCCGCCGATCTGCTGCAAAGA 320490 28 96.4 32 .............T.............. TATCCTATGTTAGAAGCAATCAAAGCGGAGCT 320550 28 96.4 32 .............T.............. TTGCAAAGCTTCGAGAAGATACACAGAAAGAG 320610 28 96.4 32 .............T.............. TGCTGAAGCTCCTTCAAAAGTTGTTTTACCTG 320670 28 96.4 32 .............T.............. TGAGATTTCATGAAGAGCCGGAAGAGTATGAA 320730 28 96.4 32 .............T.............. AACGAAAGATTATCCCTTCTATCGCGTGCTTG 320790 28 100.0 32 ............................ CATTCATTGTCTGATAGCTTCAGCATCAATTG 320850 28 100.0 32 ............................ CATGGTTGCCACGTCGGGCATAGTTGTGGGCA 320910 28 100.0 32 ............................ AACGCTTGATGACTTGGTGTGTGGGTAATGCG 320970 28 100.0 32 ............................ TTCGCCGTCAACCAATACAGATACCTGGCTAC 321030 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 104 28 99.3 32 GTTAACCGCCGCACAGGCGGCTTAGAAA # Left flank : ATTCGTGATTATGCTTTAGTAACTTCCATAAAAAGAGTTCCAGATGAGGTGGATGATTATGTCATTTTTTCAAGATGGAGACCCCAATCAATTAGTAAAAGCCAAGTGAGACGTTATCAAAAGCGTCATCCTGAAAAGTGGAGTGATGCTGTTTGTGAATATGTTTTAACTGAGCGTTCTTTACCTTTTGGCATTCCGCACTTTAAAGTGAAAAGTGGAAGTACAGGACAGACTTTTACAATTTGGGTAAAACGACACTCTTGGGATAAGCGCAATCAACGTCATGGAGTATTCGATAGTTATGGCTTGAGTAAAACTGCTGCTGTTCCTATTTTTTAAAAAAGAATGCACCTTTCTGATTAGATAATAACCCTAATTTTTCGTTAAGATGTAACTTATTGATTTTTAATCATGAAAAGTAATCTAGAAAAATTAGGGTTTTTTTATCCCTGTTCTTTAACAATTTGGATATAATGAGCGTTCTAGAAGATTTATCTCTA # Right flank : | # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACCGCCGCACAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACCGCCGCACAGGCGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //