Array 1 70-699 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMYJ01000034.1 Parasaccharibacter apium strain C6 C6_rep_c89, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 70 36 100.0 30 .................................... TTTTGCGGCGTTTACCCTCACGTTCCCCAT 136 36 100.0 30 .................................... TTCCTGCCGCCTGCGGGCGGTTTTTTTGTG 202 36 100.0 30 .................................... ATGTCATGAAGCCACGCAGCCGCCTTGCGC 268 36 100.0 30 .................................... TCGATCCGGCGGCCGGAGAGCGGGGTGGGG 334 36 100.0 30 .................................... AATGAAATAGTTTCGTCCGTGAGAACATAA 400 36 100.0 30 .................................... CCCGTGAATCTTCCCCATTCGAGACAGGAA 466 36 97.2 30 ..................................A. CGTAGTTCCTGCCGACCCTCATCAGGTAAT 532 36 100.0 30 .................................... CGATCAGTCCGGTCCCCAAATCCTTTTTGG 598 36 100.0 30 .................................... TCCTTTTTAGGGTGGGGAACTGTGACAGAA 664 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 99.7 30 AGCCTACCATAGGCAAATCGGTAGGGAAACCACGGC # Left flank : GTGTTGCTATGATTTTCGATCGTAAAAACAATAAAAAATCATGCAACATCAATCTGTTACGCAAGAGCTA # Right flank : CCTTCCGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGCCTACCATAGGCAAATCGGTAGGGAAACCACGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.90,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 49759-48387 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMYJ01000006.1 Parasaccharibacter apium strain C6 C6_c6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 49758 29 100.0 32 ............................. TGTATTCAAAAAAAGCGGCGCAGGCTCCTAAA 49697 29 100.0 32 ............................. TTCGCCGGGTATACAATCAGATTCTTCAGCAG 49636 29 100.0 32 ............................. GCATGGGGTACAACCCCGACAATATCCCCTAC 49575 29 100.0 32 ............................. AGGACCCTTCCACTCTACATTGTGCAGGGCAA 49514 29 100.0 32 ............................. ATGCCACGACAAGCAGTTCTGGTGGGAATATC 49453 29 100.0 32 ............................. GCGGCTTTGATGAGAAAATTATTAACTTACCT 49392 29 96.6 32 .............G............... CTCTGGTATCCTATAGGGGAACTACGGGTTGC 49331 29 100.0 32 ............................. CAGTACAATGGCAGATACGCCGGAGAAACGGA 49270 29 100.0 32 ............................. GACTGCGCCTCCTCAACCCACGCCACGTCAAA 49209 29 100.0 32 ............................. GAGATCAGGCGGTCAATTTTTTTCTCAGGGAT 49148 29 100.0 32 ............................. CTCAACAGATTTAAAAAGGTGCAGGGAGAAAC 49087 29 100.0 32 ............................. GCCAGCGCAGCTGCGGGGACGACTGTTGCGGC 49026 29 100.0 32 ............................. CGGACTGCCAGACCCGCTATTGAGAAGGGTGC 48965 29 100.0 32 ............................. CCATGCAACGAGCCGCTCCAGAAGGTCCATGC 48904 29 100.0 32 ............................. TGGCTCAGAAAATCGGGGTCCAGTCTGTGGCG 48843 29 100.0 32 ............................. TCAGGGCGGCGGCTGGGGACGGTGTTCTGGTT 48782 29 100.0 32 ............................. GCGTTGCGTGCTTCAAGGCCAGAACTGTTCGA 48721 29 100.0 32 ............................. TCAAAAACAACCATCTCGCTTCAGGATTAGCT 48660 29 100.0 32 ............................. CACCAATTCAGAATAGAGAAAAAAATCTGCCC 48599 29 100.0 32 ............................. ACCGTGCCCGGATTTCCATTATCCGGCCAGAC 48538 29 100.0 32 ............................. CTGGCCGTCATGGAGCGTATCCACGCCCTCGT 48477 29 100.0 32 ............................. CCGGCGGACACAGAGGTTTACTTCCAGCATGA 48416 29 93.1 0 ......................CA..... | T [48389] ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.6 32 CTGTTCCCCGCCTACGCGGGGATGAACCG # Left flank : GTTCAGCGTCTCAACTTTCTTCTGTAAGGGCCGGAGAGGACTTGCCTCGGCGAGGTCATTAAAATTATATTTAATTCGGTAAGTTCTTTGACAATTAAAAAAGACTTATAATACAAATGGTTACAGGAAG # Right flank : GTGCCAGACCGCCATCACTGGCCTGTACCGAACTGTTCGCCGGTGGGTCATGGGGTGGTTGGTGGCATATGTGGTCGCCAGAGCCATTCCAGAGCTTCGGGAAGGGTCTGTTCGATGGTGGGGCCATCCACATGCCGGGCATTGCGGGCAAAGACAAATTGGTAATCATAGCCCTTGTCGGCCAGCACGCGGGCCATGTTTTCCCCAGCCAGCACCCAGTCATGCATGCCATCAGGCATGGACGGAACGGGGTAGAACAGGTCCTGGTCGCCTACTTCGTACCAGATGTGCAGCGGGGCCAGTGGTGCCGCCGGGATGAGCGCCGCACCGGGATGGGGTGGTACGGCTTCCGGTGTTCCGGCCCATGGGGAGTGAAGCTGCCATCCCCCGCCGGGCAGAGCGGGGTCGTGCGGCCATTGCTGGTTGACCAGCGAAGGAGAGTAGGCCAGCACCCGGTGATAGAGGTTGGGCCGGAACCAGGCCATGGCAAAGGCCGCTGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCCTACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCCTACGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 19312-20133 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMYJ01000013.1 Parasaccharibacter apium strain C6 C6_c13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 19312 29 100.0 32 ............................. AATTTTCGGAGACAAGCGGGGGAGCGTCAAAG 19373 29 100.0 32 ............................. CTATCTCGATAGGCTTTATCCCGCTCTAAAGC 19434 29 100.0 32 ............................. CCATCGGGGGGTACCCAAGAGGGGCGACGGTG 19495 29 100.0 32 ............................. TATCCGGTTGTCAGCGTGCCCTGCACGGCGGG 19556 29 100.0 32 ............................. CTTGTGCCTGCTTGTTGCCTGCCGTCTTGGGA 19617 29 100.0 32 ............................. GCCCAGAGGATCCGTCAATATCTCAGCGCCGT 19678 29 100.0 32 ............................. CTGCTTGACGGACATGGCCAGCGATTTTTGTA 19739 29 100.0 32 ............................. CATTACCTATTTCGTGAGACCTGGAATACCAG 19800 29 100.0 32 ............................. ACGACGGCGAGGTGCGCCTGGATCGCCTGAAC 19861 29 100.0 32 ............................. GCGGCGATTACTGGGCCGTTTCTGGACAGGCG 19922 29 100.0 32 ............................. AACACTGGCAGCAACGGGCAGACGGGCCCGGG 19983 29 100.0 32 ............................. GCCCTGGGCTTCCCGAAAGCCACCATGACACC 20044 29 100.0 32 ............................. ACCTTTTTTGATGCTCTGGCCCAGTTTCGCCA 20105 29 93.1 0 .........................G.T. | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.5 32 CTGTTCCCCGCCCATGCGGGGATGAACCG # Left flank : CTGGAGAGAATCATTCCGACCATTGAGCAGGTTCTTTCGGCTGGCGGTCTGCCTCGTCCCGAGCCCCCACCGGAGGCCGTGCCCGTCGCTTTTGAAGATGAAACCTTTGGCGATCCGGGGCACCGTTGATGCTGGTTGTGGTGGTCACCAATGCGCCACCCCGCCTGCGTGGCCGTCTGGCAGCATGGCTGGTGGAAATACGGGCTGGGGTCTATGTGGGCAGCTACTCCAGACGGACAAGGGAGATGGTCTGGGAGCAGGTACTGCTTGGCCTTGGGCCTGAGGGTGATGCTGTCATGGTTTGGCATGTTCCCAACGATCAGGGATATGAGTTCCGTACGGCTGGTCACAATCGCCGGATGCCGGTTGATTTCGATGGATTGAAACTGGTTGCTTTTCGACCGGAATAAAGCGAAGGAGTGAGGTATTAAATTCTGGTTTAAGTTGGTACGGTCTTTGACAATAAAAAAAGTCATGTCTTACAGTACGTTGCAGGAAGT # Right flank : GTCTTCATGAAAGACTCCCTGGGAACAGCTGGGGATCAGGGGAAAGTCCTTAAAAAACTTGAGGAACAGCGCAAAGAGGCCAACATCCTCATATTGAGGATGCCGGGGTATAAATCAAGCGAAGTCACCCTATCCGGCTACGAGTTCGACCGCACATCTCAATCAGGGTGCGATCTTCTGGTCGTCCGAATGACTTTGCAGGAAGTGCGTTTCGGGGCGAAAAAACGGGTGGTAATGAAAAATTGGACACCTGTTGAAGCCGACAATATGGGGAATAAAATCCCCCAGAAAATTAGCGGTTAATTATTCATCCCCTAGCGTGAAATCAACCTCTGCTGTCCCGATACCATAGTTATTGATCTTTATGTCAAAATCTTCTGATGACCAGCACTTTGCGGTGACAAAATCCTTAGCTGATTTAATTATGTCATCACCAGTACCTTTTGGAGAAGAAAAATGGCATGAATCTGCCCGCCAGTAATTATCATTACCTTTCTGGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCCCATGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCCCATGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.00,-12.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 25175-25342 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMYJ01000018.1 Parasaccharibacter apium strain C6 C6_c18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ============================ ================== 25175 38 100.0 28 ...................................... TTGCGGCGTTTACCCTCACGTTCCCCAT 25241 38 100.0 28 ...................................... CCTGCCGCCTGCGGGCGGTTTTTTTGTG 25307 36 94.7 0 ....................................-- | ========== ====== ====== ====== ====================================== ============================ ================== 3 38 98.2 28 AGCCTACCATAGGCAAATCGGTAGGGAAACCACGGCTT # Left flank : ACCATGACTATTCTTGCAGCGACTGAAATTGTTGCCTCTAACCTGGTTAAAGCCCTTGAACATAACAGTGCTGCCTTACTGCGCCTGCCTGTCTGCATCGCTGGGGGTAGCTCATGAAAGCAGAGGAGACCCGATTCTTGTGGCTAATAATCTTTTTCGACCTCCCCGTCCGCACCAAAATTCAAAGGCGGCAGGCAGCGCAGTTTCGTAATTTCCTACGTGATGATGGATTCATCATGCTACAATATTCTGTCTATGTTCGTGTCGGACGGGGACAAGACAGTCTCGATAAACATTTACGCCGGGTTCGAACCGCCCTCCCTAAAGAAGGAAGCGTCCGAGTTTTGCAAGTAACGGACAAACAGTATGGAAGGATGGAGATTATGCTCGGCCTTGCCAAAAAAACCGAAGGAATAGGCACGAAACAGATGGTGTTGCTATGATTTTCGATCGTAAAAACAATAAAAAATCATGCAACATCAATCTGTTACGCAAGAGCT # Right flank : | # Questionable array : NO Score: 5.27 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGCCTACCATAGGCAAATCGGTAGGGAAACCACGGCTT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.40,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA //