Array 1 1065834-1066101 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP017469.1 Hafnia sp. CBA7124 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1065834 28 100.0 32 ............................ TTTGGTCGGTGCGCCAATCTTCCAGAAGTTAA 1065894 28 100.0 32 ............................ TGATTCAGGTAGGAATCTTATTGTTAAAGAGC 1065954 28 100.0 32 ............................ CATGCTAGGCCAAGGATTTCGCCTTGTCTCAT 1066014 28 100.0 32 ............................ TTTAAACAACGGCTCTATCCCGGATGGACGAA 1066074 28 67.9 0 .C.......T.......T..A.A.TTCC | ========== ====== ====== ====== ============================ ================================ ================== 5 28 93.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGATTTGATTGGGATACGCTTGGCCCCGTATTAGGCAAGGTGTATGAGGAGATCGACGAAGTGATGGATGAAGCGCAGCAGGCGGTGGTGGATGAGGAAAAGCTAGGCGAAGAAATTGGCGATCTGCTGTTTGCAACGGTGAATTTATCGCGTCACTTAGGCCATAAAGCTGAAAACGCCCTACAGGCAGCCAACCGCAAATTTGAACGTCGTTTCCGTGCAGTAGAAGATGCAGTGCGCGCCTCGGGCAAAACCATGGAAGAAGCCACGCTTGACGAAATGGAAGCGCATTGGCAGCAGGTGAAAAAGGCTGAAGGTAAATAGTCAAAATCGCGTTGGTTAAAGTGAAAAGGGCTGACGTGCTGCGTTAGCCTTTTTTTTCTGCCTACTAGTAACTGATTGATTTTAAACAGGCTGAGAATAACGCGCAGAAAAAGGGTATTTTGAATTTATTGCGCGAAATCGCTTTATTTTCACTCAGCTAGTCATAAAATCCAGCA # Right flank : CTCGCCACTCTATTTTTTACCATCTGGTTGCAAAATTCCTCGTGTGCCTAGTAGAAACAGCAACGTCATTAGTGCCATAGCCAGTAGACCTGCTTGGCTAACACGGGCTCGAGATTGTTGGTAAAGCTTGGTGATAGTGGGTAAGTCTTGTTTGGTTGCTCCAGACTGCACTAACAGGTTGCTGAATCCTTGATCGCTGAGATAGGGAAACACGGTCATATTTTGTATGGTAATGCGGGTCTGAGGTGTGACGGTGATGTCCGCGATGCGGTGTTTCATGCTAAACGTAAGCGTAGTAAGCATGACCGTACTCACCAACGCTACACCAAGCGCTTGACCAATATCACGGGCGGCAGACTGAATTCCGCCTGACTGGCGAGCCTCTTTTTCCGGTAATGCACTGGTGACCAAATATGGCGCGTTGGCTGCAATCACTCCCATGCTGGAACCGATAAAACAAAGCCCGACAATAATCAATGATCTGTTAAAACTATGCACTC # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2793030-2791380 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP017469.1 Hafnia sp. CBA7124 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 2793029 28 100.0 32 ............................ ACACGCCCTAAAGCCATATTCCACTCCTTACA 2792969 28 100.0 32 ............................ TCTATCCAGCGCAGGCATGCCTCTTCGAACAA 2792909 28 100.0 32 ............................ TATCAGTGGCCTGCGGTAATTCTCTGGGACAG 2792849 28 100.0 32 ............................ TGCCATTCGTGAAGTCGGCGAATACAAAGTAA 2792789 28 100.0 34 ............................ CTGCTGGCGCGGTAGGAAACTCAAGCAGAAGTAA 2792727 28 100.0 32 ............................ CGGTGAAATGATTGTTGTTGCGGATACATACG 2792667 28 100.0 32 ............................ AGCTTGAACTAACCAGCTCGCCCATGTATGCC 2792607 28 100.0 32 ............................ ATCATGAAAGTCACAACGGTATAACTCTGTTA 2792547 28 100.0 32 ............................ TGTATCTGTGATGCGGTACCGGATGTAGGTTT 2792487 28 100.0 32 ............................ AGTACCAACCTCCACACCTCGAAGTTTAGCAA 2792427 28 100.0 32 ............................ AACAAAAAATACTCAAGCCGCTTTGCGATGTT 2792367 28 100.0 32 ............................ GTCTCTGGGTGGCGATACTGCCAGTAAACCTT 2792307 28 100.0 32 ............................ AATCAAAGCCCGCGCATTCTTCAGCTGTAGGA 2792247 28 100.0 32 ............................ ATGAAACGCAGTGCGTCCAAATCGCGCATCAT 2792187 28 100.0 32 ............................ AACCATGCGATCTTTAATGCAATCGTAATAAC 2792127 28 100.0 32 ............................ GGTAGGCGCTGTATTTTTAGATGGCTCGCAGC 2792067 28 100.0 32 ............................ ATGCCCTATCTGCATTGGCGTATGGTCCGCGC 2792007 28 100.0 32 ............................ GCCTCTCTTAATTTCGGTAGGATTGAATTTGC 2791947 28 100.0 32 ............................ TAACTCATGATGGTATGTCGGCTTTAATTGAA 2791887 28 100.0 32 ............................ CGGCTGAGTCACCGGCGGGCCGTAAGCTTGCG 2791827 28 100.0 32 ............................ AAAATATTAGTCATTTGTTTTGAGCAAGCGAA 2791767 28 100.0 32 ............................ AGCACCCATCGCAAGTTTCTCGGACCAATGGT 2791707 28 100.0 32 ............................ AAATGGCCACAGAGACGAACCGCTGACACCAT 2791647 28 100.0 32 ............................ CACATATTCCAGCCTCGCCGTATGCATTCAAA 2791587 28 100.0 32 ............................ AAGTTGTTTTACCTAACGCGGCTATTAGTCCG 2791527 28 96.4 32 ....................T....... AACATCAGGAACGCCGTATTTAACTGACGTGA 2791467 28 100.0 32 ............................ ATAGTCGGTATGGAAACACAACGCAACACACC 2791407 28 92.9 0 .........................GT. | ========== ====== ====== ====== ============================ ================================== ================== 28 28 99.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TCGGTGCCGTAGTGGGAACGCTACTGGCGCTTGCTTCTGCACGAAGCGAATGGCCGATGGTAAGCTCCATGTTCCTGTGTATCTTTGCTGCCATGATGCTGTTCCTGTATGCCTCTAGACCTGCTAAGGCTAGCAACCGTATCGATCCCGCCTAAGCGCTTTGGCTCCCCGCTGATAAAAATAGGCGGGGAGGCCATTAGCAATCGCCGCTCTTTATTTGGCATATGCAACAGACATATGTTTGCCTGTTTGCAGAGCGCTAGCAATGTAGGGCTCAGATGAGCTGAAAGCGTTAATCTGCCCCCATCTTTCCTGTGTGATCCGAACGCCACTCTCTAGCGATTCCCCTAAATACGATAAGCTTCCACGAACCCTTTTTTTTCGCCTATTTATAACCCTTTGATTTTATGTAATAGTTTATCACGAAGATAAAAAAGGGTAATGCAGTGAAAAATGAGTTACAGATCTGATTATTCGAAGCTTTATACGAATATTCTACA # Right flank : TTTTGCCTCGGTTTCGTATCCGTGGAACAAAACGTTCAAATAAAAAACTCACAGGGATGACATGAGTAGATTATTGATATTACTATTTTTTATTTCTTCACCCGTCTTTGCTGTCAGCGATATTAACAACGCCACAAAGGCGGCTCTAGAATTCAATAAATGGTATCTGCAACAGATTGAAAAAGATGTCTATCCGCTGCTAGGAAATCGTAGCCCAGAAATGAGTGAATACGTAACCGCAGAGACGTTGGGAAAGCTGCATAAGGCAGTGAATAGCGATGATGAATTCTATGACGCCGACTTTTTTACTCGTTCACAAGACATTGGGGCTGATTGGCCGAAAAATGTCACCGTGGTTTCTTCCGATCTCGATCCGGTTTGCCTGAATGTTTACGTTGCTTATGGGAAAGATATGTCCCACACGGTCATTGACTGTATGGTGAAGGAGAAAGGGAAGTGGAAAATCCAGTCGGTAGCGCAGCAAGCTATCGTGCCAAACG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 2852729-2852401 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP017469.1 Hafnia sp. CBA7124 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2852728 28 100.0 32 ............................ ACTCCGCCTCTGGCGACTCGCCTTCTGGCGCA 2852668 28 100.0 32 ............................ ACTCTTTAACATTGCTTCTTTCTCCCATTTTT 2852608 28 100.0 32 ............................ TCTCGCTGAATTAATGCAGAGATAAGCGTGGA 2852548 28 100.0 32 ............................ TATTTCAATCAATTATACATCTTATGATTTAT 2852488 28 100.0 32 ............................ CAAACAATCACAGCTCGCATGCCGTGTACGCC 2852428 28 78.6 0 ...C.................CA.A.TT | ========== ====== ====== ====== ============================ ================================ ================== 6 28 96.4 32 GTTAACTGCCGTACAGGCAGCTTAGAAA # Left flank : CCAGAAAAAGTGGCCTACCGAACGGTTAGTCGCGTGCAGGTAAAAAGCAGCGCGGAGAGGCTACGGCGCAGATCGGTGAAAAAAGGTTGGCTCACCGAAGAACAGGCTCGCCTGCAAATTCTCGATGTCAACGAACAAAGAACCTCGTTACCTTTTGTCGTGCTAAAAAGTTTGTCTACTGGGCAAATGTTCCATCTGTTTATTCGTCAGGGCGAACTGCAAACGCAGCCAACGGCGGGCAAATTTAGTAGCTATGGATTAAGCGCAACGGCAACGGTGCCGTGGTTTTAGTTTGTCATCCGCGTTGATATCCCCGTGCTCATCAACGGCGGGGATATGTTTCATCTAACGATCGAACAAATCTAACGAACCCTTTTTTTGAAGGTATATCTAAGTTGTTGATTTTGAATGCCAGCAACTAATGCGCAGAAAAAAGGGTCAAACCCACTCAAAGTGAATTAATGGTTTGATAGGAAAAGGTTTTTGGCTGATTTTCAACA # Right flank : ATCTTCTGCCTCATTTTCACTATACTTATTTCAGCGCTGCATCTTTGTGGCAGCATGCGAGCTAACTTTCGTTGAGCTAAGGGGCTAATTTGATTTGGTTTGAGCAAGGTCTTTATTTGCGGGTTGAGGAGTTGGAGAATGGGCCACGGCCTTTGCCGCTGCGTAGCGGGTTTAGTCGTGAAATAGCCTATCGGGCGCTAGGCGTGTTTAATCCCTCTGAATCATCGGATGCTTACTACATATTATCTAACGATCGGGATGAAATATGGTTTATCTGCAATCGACACCTACGAACGGTTGCGCTTTTACCTGATACCACCGACTTTAGGCGTCCGATTGTCTATTGAGTATGGGCGCGGGTGTTCCAACTGCTGTATTTGAATGAAAAACCATCGCCCTAGACGCCATCCTATTCCCGACGTATAAATATTCTCAGGCGTATAACGAATTAACCAACGTGTGAGGAGTTATTTGATGACAGCATTAGCCGTGGTTTTTCA # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 2862577-2861168 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP017469.1 Hafnia sp. CBA7124 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2862576 28 100.0 33 ............................ TCAACCCATCCATTAGGAATTTTAAATGATTCA 2862515 28 100.0 32 ............................ ACCATGAGCAGATGGCTATCCAGGCATTAAAC 2862455 28 100.0 32 ............................ AATATCATGGAGCATCTAAACGAAAAATCAGA 2862395 28 100.0 32 ............................ AATATTGCAATAAACAGTAAACATAAAAATCA 2862335 28 100.0 32 ............................ TTTTGGCTTGCATTATAGCAGCAACAGTTTAA 2862275 28 100.0 32 ............................ TCAATATATGCAGGGGCTTTTTTATGCACTGG 2862215 28 100.0 32 ............................ CTTCGGGGCCAGCGTGGATTTTTTACTGATAT 2862155 28 100.0 32 ............................ ATCTGCTGTTTTTAAAAATTCTGGCACTAACG 2862095 28 100.0 32 ............................ ATGTATTAGTTCCGTCATCCCGAGACAAACCT 2862035 28 100.0 32 ............................ TGGCTCAGCCCATGAGGGTGTGGCGGGCGAAC 2861975 28 100.0 32 ............................ TTGACTGCCGTTAATTACTGGCTCTGCGTTAA 2861915 28 100.0 32 ............................ TTGCGGGTTATGGTGTTTAATCAGGATATGAT 2861855 28 100.0 32 ............................ GATATGAGTCGGCCTGAACGTTGACTGCACAC 2861795 28 100.0 32 ............................ GGTCAGATGCAAATGCTTGCAAACCCGCTCAA 2861735 28 100.0 32 ............................ GTGAGGGAAAAATACTCTGTAGACGCTGTGCC 2861675 28 100.0 32 ............................ ACTGATCCCGATGTTTCACGTGAATGGATATC 2861615 28 100.0 32 ............................ GTCCTATACGGCATCGAAATCAACTCTCGCGA 2861555 28 100.0 32 ............................ TTCCGTTCCACTGCGTCGCATCTCCGTGCAAA 2861495 28 100.0 32 ............................ TTTCAGTGATTGGATTGTATTTAATGCGAAAA 2861435 28 100.0 32 ............................ CATGAGTGGAAGGGGAATTTTTCAGCTGAAGA 2861375 28 100.0 32 ............................ GAGCATCGAATCCAGCGCCACGCCCTGTGTCG 2861315 28 100.0 32 ............................ GTATCAAAAGCGCGAAACCTACGCGATAGAAC 2861255 28 100.0 32 ............................ ATCCATAGATGCATTTACTTGTTTTTTCCAAG 2861195 28 96.4 0 ........................C... | ========== ====== ====== ====== ============================ ================================= ================== 24 28 99.9 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGTGACTTTCACTGGCAAGGTGCGCAACCATAATCTTGGCGATAACGTCAGCGCATTGACCTTAGAGCACTATCCTGGGATGACAGAAAAAGCGTTAAATGAAATTGTGGCAGAAGCCCGTTCGCGCTGGCCTCTACAGCGTATTTCGCTGATCCACCGCATTGGCGCCATGTATCCCGGCGATGAAATTGTATTCGTTGGAGTGACCAGCGCACATCGCAGCATGGCCTTTGATGCCGCCGAGTTCATTATGGACTACCTCAAAACCCGCGCGCCGTTCTGGAAACGAGAAGCCACCGAGCAGGGCGACCGCTGGGTCGACGCCCGCGACAGTGACCAACAAGCGGCAAAACGCTGGTAAGTTCTTTCAACCCTTTTTTCTGCCCTCACGATAACTCATTGATTTTTCACTCCTCCAATGAACCGTAAGAAAAAAGGGTTAAATTCCCCAAAATGAGCTACCGATCTGATTAATCGACGCTTTCTGCGAATATCCTACA # Right flank : CTCACCATGGTTTGTGTTTAATTTTATTGGCTATGTATCAACCTTAAGCCGTTAAGCTGGTTATATTCCAAAATTAAGAATTACTGCATCGTTAAGTGTGATTTAAGTTAAATTTCCCTAATGTGTTGGGTGGTATTTTTGCATTATCTCCAACGATGGAATAACGATGTGAACAGCAATGATTTCTCTCCCTCTGATCTGAAAACTATTCTGCATTCAAAACGCTCAAATATTTATTACCTCCAATATTGCCGAGTATTAGTTAACGGTGGTCGAGTGGAATATGTGACGGATGAAGGGCGCGAATCACTGTATTGGAATATTCCCATCGCGAATACCACCGTGGTTATGTTGGGCACCGGAACCTCGGTCACTCAGGCCGCAATGCGAGAGTTTGCCCGTGCAGGCGTATTGGTCGGTTTTTGCGGCGGAGGGGGAACGCCCTTATTTGCGGCGAATGAGGTTGAGATAGATGTCTCGTGGTTAGCTCCGCAAAGCGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //