Array 1 3963-4967 **** Predicted by CRISPRDetect 2.4 *** >NZ_NARP01000033.1 Gilliamella apicola strain A-7-12 NODE_33, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3963 29 100.0 32 ............................. CGAATAGGTAGGTGATATGACAGAACACGCAT 4024 29 100.0 32 ............................. CCTTGACTCACCTAGTAGACATGGTCTAAATG 4085 29 100.0 32 ............................. TAATGAGTTACGCTCATATGTGCTTTGGGCTA 4146 29 100.0 32 ............................. GGTTTAGTCGTCTTGAATCGTGGTGGGTCGCC 4207 29 100.0 32 ............................. CATTTATGAACCGTTTCCACTCCCTCTAAATA 4268 29 100.0 32 ............................. AAATGTTAACAATTGTCTCTTTTGTTTCTTAG 4329 29 100.0 32 ............................. GGTTCACATTGGATTTAGTCCGAGCAATAACC 4390 29 100.0 32 ............................. GGTTCACATTGGATTTAGTCCGAGCAATAACC 4451 29 100.0 32 ............................. GCTGATAAAAAAAGCCAAGGGGGATAACTAAT 4512 29 100.0 32 ............................. CGTTATGTTGAATTTGTAGGCTGTATACTGTT 4573 29 100.0 32 ............................. GGTTTTGGATACTGATAAACAGCAACAGCACT 4634 29 100.0 32 ............................. AAATTGAGCGAGTACTGCGCGACGTTGGACTC 4695 29 100.0 32 ............................. GGTACTGCAGATTGGTGGAAGAAACAATCAGA 4756 29 100.0 32 ............................. CTTAGAGCTATGGCTAACAGATTATTTTGAGG 4817 29 100.0 32 ............................. TATGTTCACTAAAGGATTTGAAGGTGAAATAT 4878 29 96.6 32 ............T................ TCCTGTAAAATATTCGTACACAGTTAATGGAG 4939 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.6 32 ATGTTCCCTGTACACACAGGGATAAACCG # Left flank : AAGATATATGGTGGAGTTTATAACCTGTTTGACAAAGATGTCTCAAATGCTGACTTCGGTAAAACTTTAGAAGGTCGACGTTACTTCATAGGTACCGAGATTAACTTCTAAATTAACTAATAAGTATTTTCCTATAAAAAAGATGACTGTTAAAACAGTCATCTTTTTCTATTTATACTAATATAGATTATTTATAATCCAAAAATAGAAATACCTTTTTACCCGCCGATAAAATAACTTAGTGCAATGTCAACATAGTAATTTTTTGCTATTTAATAAATCCTAATTATACATTTTAATGTATTATTGTTTTTAATATCATGAAAAATAACAATTTATTGGTAGAATCCTATGAATATTAATTTTACCTACCGTTAATTTAAATTAACTCAATAAAAACATAGTGTTATAAATACTAATTTTATTACAAATTAACCCAAAAAATCGGTAGAAATTTGACAGTCAATATTTTAATTATAAAACAGTATGTTATAATTGGT # Right flank : GTTCTATAAAGCTGGTTAGTCAGACTAAGAACGAAGAATTGGCTAAAATAATTCACGAAATGGATTACATCCCGTGGACAAATGTGTCAACTCCAAGAGGTGTTTATGCTCATGAGATGGGGCACGTGTTACATTATCAATATAAAGAAGATATGGATGATATTATCAAAAAATCATAGGGCGAGCTTGGGCATATGCAATTAGTAATTATGCTCTACATAACAAACGAGAATTTGTTGCTGAAGCGTTTTCGTTGTATATTGAAAATCACATAGAAGCTAAAAAGAGACTTTCTCCAGAATTATTTAAACTTTTCGAATCACTAGATAAGGATATTAAATGAATAAGTTTGATTTATTAGTTGAGCAAGCAACTGAACTGATTAACACCGAGCCACTTCCTGATGATGCAGAGGAACAATTGCAAAAAATTATCGACCAAGCTGACGACAAAACGGAAAGACACATGTTAGGTAGGCTTGCTGAAGCTCTGTTTGTTAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCTGTACACACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTGTTCCCTATACACATAGGGATAAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 83686-84812 **** Predicted by CRISPRDetect 2.4 *** >NZ_NARP01000011.1 Gilliamella apicola strain A-7-12 NODE_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 83686 29 100.0 32 ............................. ATATCCGTGCACATACACCAACCTAGATTAAA 83747 29 100.0 32 ............................. CTGGGATCCTTACCTTGTGCCAGTAGCTTCTT 83808 29 96.6 32 ............................C ACAACCTGTTACGTATAATGTTGATTTAGTGC 83869 29 100.0 32 ............................. ACGTAATCGAACTGTACCAATCACAAAAGATC 83930 29 100.0 32 ............................. TTTCTGTATGATCAGTATCACGATTGAGATTG 83991 29 100.0 32 ............................. CTGTCGAACGCTACACATTGCAAAAATTAAAT 84052 29 100.0 32 ............................. GATGTTAGTATTACCAGTCATTATTGATCAAT 84113 29 100.0 32 ............................. GCAACATCGAGCACGAGGGCGAGACACAGCAA 84174 29 100.0 32 ............................. AATGCCCTGAATGCAAATTTATGAAGCCGATC 84235 29 100.0 32 ............................. TTCAATTTCTTTTTGATTATTATCATAGAAAT 84296 29 100.0 32 ............................. CTGGACATCGGCATGATTGAAATTATTCTACC 84357 29 100.0 32 ............................. GGCGTTAGAAAGCTATTACGTCTGGAAATGCC 84418 29 100.0 32 ............................. CGTGGGATGATAAAAACGGTTGTTGGCGAGAT 84479 29 100.0 32 ............................. GATTAAAACACGCTCGGAACATTTGAAAGATG 84540 29 100.0 32 ............................. TTTCTGTATGATCAGTATCACGATTGAGATTG 84601 29 100.0 32 ............................. CTGTCGAACGCTACACATTGCAAAAATTAAAT 84662 29 100.0 32 ............................. GATGTTAGTATTACCAGTCATTATTGATCAAT 84723 29 100.0 32 ............................. CGGTCCAACATTAGAGACCGTGTTGGTTTTGT 84784 29 89.7 0 .......T..................TT. | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.3 32 ATGTTCCCTGTATGCACAGGGATAAACCG # Left flank : GTATAAAAATCAATAAATAATTCAAATTAACTTTATGTTTATAAAGAAAACATAATATTTGGTCAATATAAGCATTTACTTTTAAAATTAAGTAATAGATTTGCAATAAAAGCCTTACATAATGGTTTTTACTTAAAAAAATATAGTTGATTACTTTAAGATTGCCGAAATGATATTAACTAAAAACGAGTATATAAATCATAGATTATGAAAAATTTTGTAACTAAGTTACACAAACAAATCACTCTAAAAATAGAGTAATTTTGATAACAATGAAGCACTAATAACATCTCAATAAAACTTACTATTTTTTTAACCAAATGAAAAATATAAACTTATTGGTAGAATCCCGTAGAATCTAATTTTAATTTCCATTAATTTTAATTAATCAAATAAAAACATATTGTTATAGATTGTGATTTTAATGAAAAATATTCTAAAAAATCGGTAGAAATTTGACAGCCAATATTTTAATTATAAAACAGTATGTTATAATTGGT # Right flank : GGATTGGGTGCATCGATTCTCTCGATGTTATTGTATATTCCCTGTATATATATGAAAAATTAGAAGGTATTGTTATAAAAAATAAACGAGCAAAGTTGTTTTTAAAGACAATATCTGATTTATTAAGATTAGCTGTAAATGTTTTTCTGAAACACAATAAAACTTAATCTAATATTAACCAACGATTGTAAGGAATTGATATGAAAAAGATACTAATGTTAATTACCGCTCTATTTTTATTCGGATGTGACAGGACCTATACTGTGGAAGAGTTCAAAAATGATGAAAAACTAACAGATGAATACCAAAAAAAATGTCAAAACGGTGAAATTGATGGTGATAGTTTAAATTGTCAAAACTCTCGCAAAGCAGTAGTTGTACGAAATAAAGTTAGTAATGCAAGTTGGAATTAAAGTCATTTTAAAAGTGGCTTTTAAAACTTTATCTGTGGTAAGTTTTTAGACTTAAATTGATTGTTATTTATTTGAAACTTATCACTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCTGTATGCACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTGTTCCCCGTATGCACGGGGATAAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 90135-90835 **** Predicted by CRISPRDetect 2.4 *** >NZ_NARP01000011.1 Gilliamella apicola strain A-7-12 NODE_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 90135 29 93.1 32 ..A..........G............... TCCTAACCGTTAGGGAAAATTTTGTAAACGCA 90196 29 93.1 32 G............G............... TAATTGGTTTTTAAATGGCGAGCTTTGAATGT 90257 29 93.1 32 G............G............... ATATTGTGTCGATATTAAAAGCAAAGCCAAGC 90318 29 96.6 33 .............G............... CAAAAAGCGACGATATATACTTAAACCTTTAGC 90380 29 93.1 32 .............GT.............. AGGATCCTCACCTAGCGCATATGTCCTCATAA 90441 29 96.6 32 .............G............... AGTTCGATCAACCGACTAATGATATTACGCGC 90502 29 96.6 32 .............G............... AAAATCACGAAGTTTTACCAGTATCAGAACAA 90563 29 100.0 32 ............................. GAAAATTCAAAACTTGGATTAAACATTACATT 90624 29 100.0 32 ............................. CATTGGCGGCGTTGATTTAGATACAAATAAAA 90685 29 100.0 32 ............................. CGTCTATCCTCAATATTCTAGTGGTGGTTTTA 90746 29 100.0 32 ............................. CCACCAGTCGTCCTCACGCTCATAGTCTGGTA 90807 29 89.7 0 .............G......A.......A | ========== ====== ====== ====== ============================= ================================= ================== 12 29 96.0 32 ATGTTCCCTGTATACACAGGGATAAACCG # Left flank : TATAAAAATCAATAAATAATTTAAATTAACTTTATGTTTATAAAGGAAATATAAAACATTGAGTAACTAACAGTGTTTACTTGTAATGTTGATTAATAGATTTGAAATAACAAAGCTTAAATAATGGTTTTTACTTAAAAAAAATAGTTGATTACTTTAAGTTTGCTGAAATGATATTAACTAAAAACGAGTATATGAATCCTAGATTAGGAAAATTTGGTAACTAAGATATACAAACAAACCACTTTAAAAAATAGAGTAATTTTGATAACAACAAAGCACTAATAGCTTCTCAATAAAACTTACCATTATTTTAACCAAATGAAAAATATAAAATTATCGGTAGAATTCCGTAGAATCTAATTTTAATTTTCATCAATTTTAATTAATTAAATAAAAACATAGTGTTATAAATACAGATTTTGGTAAAAAATAGCCTAAAAAATCGGTAGAAATTTATCAGTCAATATTTTAATTATAAAACAGTATGTTATAATAGG # Right flank : AAACGGTCAACATATTCAGACGTTTTAATCATATGCACAGGGATAAAATACAAATCCACTACCGCCTTTGTAGCGGTTTTTAATTGACCTAATGGTTAAATAGCATACCATTACCGAAATTTAATTATTAAGGGAATGGTATGAAAAAGATTAAAAAACTTTTATGAAGCTTTTTTGTTTTCAAGATAAAATTTAATTGCATCAATAATCAGTTGCGCTTGAGGTACCTTTAATTGATTGCTTGCTTCCTCAATTAATGCAATATCATCTACATGAAGCTTAAAACCTTTTGTTTTCACACCTCGTTTTTCGTCACTTTTTTTTTGAATTACAGCCCTTGTTAATGCCATATAATCACCATGATTTTTAAATAAAAATTGTTATATTTAAGGCCGCAGGTGAGGACTGCAACCTTCAACCTTTGAAGCAGTTTTAGTAAACTGTACAACTTCAGATTATTAAAACTACGAGAATTAAGATTCTGTTCTTCTTGTTTCTCC # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.54, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCTGTATACACAGGGATAAACCG # Alternate repeat : ATGTTCCCTGTATGCACAGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: F [matched GTGTTCCCTATACACATAGGGATAAACCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [3-3] Score: 0/0.41 # AT richness analysis in flanks prediction: F [80.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 19608-18785 **** Predicted by CRISPRDetect 2.4 *** >NZ_NARP01000036.1 Gilliamella apicola strain A-7-12 NODE_36, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 19607 29 100.0 32 ............................. CGATGGTTCCACTCCGGTTTTGTTATCATGTA 19546 29 100.0 32 ............................. CGCACAACATATAATGATATTATTAAATTAAT 19485 29 100.0 32 ............................. GCAACTAAACATAACATTGACCCAAAATTGTT 19424 29 100.0 32 ............................. GAGATGACTAATGCAACTGACAGAACATTTTA 19363 29 100.0 32 ............................. ATTGAATATCTATCCAACGATAGTTTTATCAT 19302 29 100.0 32 ............................. CATATGTTGACTGTGTGGTTTACCGCCTACCG 19241 29 100.0 32 ............................. CAAAATTTAATTGGCACACTCAAAAAAATATT 19180 29 100.0 32 ............................. ATATTCAAATAAAAAAACATGCGTTTGACATG 19119 29 100.0 32 ............................. TCTTTGTATGTTATTAATTTACCCGTTGCTGT 19058 29 100.0 33 ............................. ATATTGTTACCACAATGAAATGCGCTGACGGGC 18996 29 100.0 32 ............................. TCATTGATTTTATTATTTCTATATGTAAATAC 18935 29 100.0 32 ............................. AACATAAATTCACAGGAATAGTAGTGAAAGAA 18874 29 100.0 32 ............................. TAAACCAAATTCGTGGGAATGTTCTATCAACA 18813 29 86.2 0 ............C..........T..T.A | ========== ====== ====== ====== ============================= ================================= ================== 14 29 99.0 32 ATGTTCCCTGTATACACAGGGATAAACCG # Left flank : AAAGATAAGTTAAATTATTAGGTCCTCTAAAAGATGAAATGTAAAGCTATTGGTTGTTGCACTCACGCATACTCATCAACTGGTTATTGCCATCGACATTTGTATTTAGTTAAAGCGAATCGAATTGTAAGTAAAGCTGGGTCAATAATGTTCCCTGTGCACATAGGCATAAACCGCGTTACAAATGAACCCGTAAAACTAACCGAATGTTTTCCCTGTATATACAGGAATAAACCAGCGATGCGTCAATTTACATGGCATTTTTTTGCTATTCAAAAATCATAATTCTAAATTTCATTGTTTACCATCTTTTTAATTATATGAAAAATATAAACTTATCGGTGGAATTCCGTAGACTCTAATTTTAATTTTCATCAATTTTAATTAATTGAATAAAAACATAGTGTTATAGATGATGATTTTAATAAAAAAGAGCCTAAAAAATCGGTAGAAATTTGGAAGTCAATATTTTAATTATAAAACAGTATGTTATAATTGGT # Right flank : CAAATCCATCATAAACAGCCCTAGTGGCGGTTTTTCATTGCCCTTAATCTTTAAATAACATACCATTACCTAAAAAAGGAGATGGTATGAAAAGAATTGTATTACTAGGATTGGTTTGTTTTGCGTTGTCTGGTTGTGGTGATGATAGTGGCAGTAAAGTTACTAATGAGTTTTTGGTTGGTAAGTGGGAGTGTAAATTGGAAGATTACAGATCGAAAATGAAAAATGGAAAATTTACTGATTATGTTAGTGATGGGTTTAATATAATAAGGAAGGAAGAATTCAAAATAGAAAATAATAAACTGTATACTATAAGTAAAACTGAAGTGGATGGACATACTTTTTGGGAATCGAATGATTGGTAAGAAAGTGATAGAACTATTACTCATACGGGACAAATAGTAGAGAAAAAGGAAGATAATTTAACCGAAAAATCAACCAATTCCCTAATTAAAAAATCACATGATACTTATTTAATGATTGAGGAATATATTAAAACT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCTGTATACACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: R [matched GTGTTCCCTATACACATAGGGATAAACCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 26358-24864 **** Predicted by CRISPRDetect 2.4 *** >NZ_NARP01000036.1 Gilliamella apicola strain A-7-12 NODE_36, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 26357 29 100.0 32 ............................. CCCTCGGTTGAGGGCTTTTTTGTTTCCTATTT 26296 29 100.0 32 ............................. TAACTCTATTTTCTAATATATCTAGTTTAACC 26235 29 100.0 32 ............................. AATTGTCTTTGATGCTATTTATAAAAAATAAA 26174 29 96.6 33 ............................T GTTGGTGCACTTAAATAACCACAGCATCGACGA 26112 29 100.0 32 ............................. TTTGCTTTCTTTATCATAGTTACGACCCTGAA 26051 29 100.0 32 ............................. CAATCGTATGCGATCACGCATGGGTAACGGAT 25990 29 100.0 32 ............................. AGGAAATAATCATTATTCGGATATGACATCCT 25929 29 100.0 32 ............................. AGTTTAAACAATCTTTAGAAACTCATGAATAT 25868 29 100.0 32 ............................. TAACTAATGCGATAATTTCATCGTCTGTTAAA 25807 29 100.0 32 ............................. GATAATAAAAAATTATCAGAGCATGATAGAGA 25746 29 100.0 32 ............................. GATTGACGTAACGAATAGGGTTAACAAATTGC 25685 29 100.0 32 ............................. AAAGCCCTTAATTTTTTAATAAATGAAAAAGG 25624 29 100.0 32 ............................. GCGGACAATGACCCGGCGAATATAAGAAATAC 25563 29 100.0 32 ............................. GAGAGTAAATGCAACAAACTTCATAGTAAATC 25502 29 96.6 32 ............................A GTTTGTCCACCAACCCAGCTAATAGGGCGTAC 25441 29 100.0 32 ............................. CGCACACGTGAAATATTAGAGGTCTTTGATTG 25380 29 100.0 32 ............................. TCAATTTAACTAACATTTGATTGCACCCTCTT 25319 29 100.0 32 ............................. TCTTTTCGCATTATCATTCGCAGATGAGTTAA 25258 29 96.6 32 .............A............... GGTGGGCCGGAGCGTTTACCAGGCTCTCCACC 25197 29 96.6 32 .............A............... AATTAGAAAAAGAAATTGATGAGTTCAAAAGA 25136 29 96.6 32 .............A............... CACGCTTTAATGCGCAAGAATCGCCAGACGGC 25075 29 96.6 32 .............A............... GGGGCGTATGGCTTGGGAGATAACACCACAGG 25014 29 93.1 32 .............A..............A CCGCAAAGTCGGATAAAATTGGAACAGCATAC 24953 29 93.1 32 ............CA............... AGCCTATCGCTATATCCCTATATGAAATGCAA 24892 29 96.6 0 .............A............... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.5 32 ATGTTCCCTGTATGCACAGGGATAAACCG # Left flank : CAGTATAAAAATCAATGAATAATTCAAATTAACTTTATGTTTATAAAGAAAACATAATATTTGGTTAATATAAGCATTTGTTTTAATATCGAGTAAGAGATTCGAAATAACAGAGTTTACTTAATAGCTTTCACTTAAAAAATATATTGGAGTATTTAAAGATCGTTGAAATGATATTAACTAAAAACGAGTATATGAATCATAGATTATGAAAATTTGGTAACTAAGATATACAAACAAACCACTTTGAAAATAGAGTAATTTTGATAATAACAAACCACTAATAACATCTCAATAAAATCTACTATTTTTTTAACTAAATGAAAAATATAAACTTATCGGTAGAATTCCGTAGAATCAAATTTTAATTTCCATCAATTTTAATTACTTTAATAAAAACATAACGTTATAAATACTGATTTTGATAAAAAATAACCTAAAAAATCGGTAGAAATTTTGTAGTCAATATTTTAATTATAAAACAGTATGTTATAATTGGT # Right flank : CTTATTTAGCAATATAATCAATGGGTCCATATTAGTTTTAGTCTGAATAACAACCGTTAAATCGTGTTAACAGCAATCAAACAGGGCGGTAAAACTGTTTACGTGAATGGGTTGATTTAAATAACTGTCCACAAAAAGGATAATACTATGTTTAAACGGCTTGGAATAATCAACAGAAAATCAGAGAGAGCTAGTGTTAATGTCTCATGGTAATGAGACAATTTTGTTAGTTGTAGAGACGTATTTATTTGAAGAGATAATTGCATCATGGGTCATAGCAACATTAATTACCATATCTATTTTTTGTTTATACGCAAAATATGTTAGTCCTGAAATTTGGAATTATATAGTCGCGTTTTTATTTGGATGATGTATGAATAAATCAAAAATATTAGGTGCCGCATTAATTGTCGTTATTTTTGTTCTAATTATTTATTTCGGTTACAACAATTATCAGGAAAAAATAGACTCAAAAACGATAAATTAGAATTAACCAATAA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCTGTATGCACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTGTTCCCCGTATGCACGGGGATAAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 50653-49894 **** Predicted by CRISPRDetect 2.4 *** >NZ_NARP01000016.1 Gilliamella apicola strain A-7-12 NODE_16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ==================================== ================== 50652 26 100.0 35 .......................... CCATCAAAGATTGGTAATTTATACCGTGTTTCCTC 50591 26 100.0 35 .......................... CCGTGATTTTTAGATGATTTAAAGAGAGCCGACAA 50530 26 100.0 35 .......................... CCGAGATCTAAATATTTTATCAAATCGGTATCAGG 50469 26 100.0 35 .......................... CCGCGAAATAATTTACCTATTGCAGTCAGGGAAAT 50408 26 100.0 35 .......................... CCGAGAAGCTAAACGAAATTTTGGACAATCATGCT 50347 26 100.0 35 .......................... CCGAGGTCCAGGCACAGACCAATTATTTAGGTCGC 50286 26 100.0 35 .......................... CCGTCTGTTCTAGACTGTCTTTCTTTTTGATAATT 50225 26 100.0 35 .......................... CCGCGTACAGCAAATATTAGATGCCTTACCCAACG 50164 26 100.0 35 .......................... CCGGACAAACTGGGCGTTATCCGCTAAATTACCCA 50103 26 100.0 35 .......................... CCGATAAAACATTATTCCAGAGTGCATTTATCCTG 50042 26 100.0 36 .......................... CCGCACTAAATTTATTAACTCAAATACACCAACATT 49980 26 100.0 35 .......................... CCGGGATTTACCAAACGAGGGTACTCGTCGTGTTA 49919 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== ==================================== ================== 13 26 100.0 35 GTGTTCCCTGTATACACAGGGATAAA # Left flank : GCTTATTGAAGAAGTTTTGTCCGCTGGTGGTATCGAACCGCCTCTACCACATGATGATGCCCAACCACCAGCTATCCCAGAACCTCAATCTTTAGCCGATAGTGGCTTTAGGAGTCGCTAATATGAGTATGTGTGTTGTGGTAACTGAAAATGTTCCACCTCGATTACGTGGTCGTTTAGCAATTTGGTTACTTGAAATTAGAGCCGGAGTTTATATCGGTGACATATCAAAACCAATAAGAGAAATGATATGGCAACAAATTGTTAAACTTGCAGAAGAAGGCAATGTAGTCCTTGCTTGGGCGACTAATACAGAATCAGGATTTGACTTCCAAACTTATGGCGCTAATAGAAGGGTTCCGGTAGATTTAGATGGACTAAGATTAGTCTCTTTTTTACCTATTGAAAATCAATAGGTTAACGTTCTTTAAAAAATTAAAAAAATTGGTAGATTTTTGGGTCGCCAATAAATCTAAATAAAACAATTATATATATTTAGA # Right flank : TCAGCTTTTACTCGTTTTTTATCTAACTAAAATCCTTTGTTGGATAAGTTATTGCTAATTTGTTCTAAGTCAGAATGTTCAGTTTTTTCTGAAACATTAAATAATTGAGCAAAATATTATACAGTTTTGTATCCATTTTGTTTTATTAGCGGTTTATCTAAAAAAGCTTGTCTTTCTGTTAGTATTGGATACCTTCTTGTTCAATAACAACACAATGATTTGATTATAATTAGTTAAAATAGTTTTTATATCACAAAGATCTTCAATAACTTGTTGCAATGATGGTATTGGAAAACACAATAAGGTATAAAATTAGATTTAATTTTTGTCTAATATTTTTATACTTATTGATAATTTATTATAGGTAATAATAAGTTTTTGAGATTATTTGCCTTAAAAGCATGGATTATGGTAGATTTTTCTTATTTATTATTGATATTAAAATAGAAAATATGTTAATACATATCAAGTTATACTCTTTCTTAAAGAAGACGATTAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 79961-79382 **** Predicted by CRISPRDetect 2.4 *** >NZ_NARP01000009.1 Gilliamella apicola strain A-7-12 NODE_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 79960 29 100.0 32 ............................. TCTAGACTATATCTTATATAAAGGATACCCCT 79899 29 100.0 33 ............................. CTTGCGCTATGTTGCGGGTCGCCGTCGTCGCCC 79837 29 100.0 32 ............................. GCGATTGATACCGTTTCTGATAACATGATTCA 79776 29 100.0 32 ............................. CAATTCAAATAATTATAGCAGATACGCCCGCC 79715 29 100.0 32 ............................. GGTGGCGGTTGTACTGTATTTGAAAGGCGCAA 79654 29 100.0 32 ............................. GCGGACGATTATAGCGGCGTAGACATGCCGTT 79593 29 100.0 32 ............................. TCCATGCAGAACAACCTATTGAAATTAAAAAA 79532 29 100.0 32 ............................. GCGTTTTCTCGTTTCTCCACGGACCAGGCGAA 79471 29 100.0 32 ............................. TTTCCGAAATGGCATGGCGTAAACTTACACCT 79410 29 79.3 0 ............C..........TTTT.T | ========== ====== ====== ====== ============================= ================================= ================== 10 29 97.9 32 ATGTTCCCTGTATACACAGGGATAAACCG # Left flank : AAATGGTACTAACTAAAAATCGGTGTTTAAGTCTAATTTATGTTAATTTTGTAACCGAACCACATAAGCAACCAATTCTAAAAATAGAGTGATTTTGATAACAACAAAGCATTAAAAACACCTCAAAAAAATCATATTAAAAACATTGAAAAGTTGGCGGAAATTTCAGCAAATGATTTTAGTTAATAAACAATAAGTTATAATAAGGACGTTCCCTGTATACATATAGATAAACCGTCGATGTATTAATATTGCATATCATTTTTTTGCTATTCAAAAATCGCAATTATGTATTTCATTGTTTACTTTTTTTTAATTACATGAAAAATATAAACTTATCGGTAGAATCCCGTAGAATCTAATTTTAACTTCTATTAATTTTAATTAATCAAATAAAAACATAGTGTTATATATTATGATTTTAATGAAAAATATCCCAAAAAATCGGTAGAAATTTGACAGTCAAGATTTTAATTATAAAACAGTATGTTATAATTGGT # Right flank : TTTATGTAAGATTTTGCTAATTTTTGTCAAAAAGTTTCAGATTATGCCTATGTTTCAGTATAAAAACATCGATAATTAATTTAGTTTAATGGTTAATTTTTATACAAGCCAACGTATTATAAAAATGCATATCATTTAATGTGTTAAGGCATTACTATTGTAAAGACAATGGTGAAAGTAACGATCTGTTAGTTCTTGATGTTCATTAGTTATCTTCGTACAATAAAAAAAATTTTTATTTTGGTTTGTTATGCAATTACATTTAGTGGTTAATACGTTTGGTTCTGATTTGCAGCGTCGTTATGGAGAAAAGATCTATAAACTGACGTTACATGGTGGATTTAGTTGTCCAAATCGTGATGGTACTCTTGGTGTTGGTGGTTGCACTTTTTGTAATGTTGCGTCAATTATCGATGAATCTATCCAAGTCAAATCTATTTCTGAACAGCTTGCAACCCAAGCACATCAAATGAAAAAATCAAAGCGTTATCTTGCCTACT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCTGTATACACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: R [matched GTGTTCCCTATACACATAGGGATAAACCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 83685-83412 **** Predicted by CRISPRDetect 2.4 *** >NZ_NARP01000009.1 Gilliamella apicola strain A-7-12 NODE_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 83684 29 100.0 32 ............................. CAAAAATTAATAACAAAAATGTAGCATTTTTT 83623 29 100.0 32 ............................. TCTGATTTATTCTGCATAAGTTCCCTAAATGT 83562 29 100.0 32 ............................. GAAATTAAATTATCGTTCAACGGTACAGACGT 83501 29 96.6 32 ..............C.............. GCAGATGATAAACGTTTAAAACGATTTGAACG 83440 29 82.8 0 A.............C........T..T.A | ========== ====== ====== ====== ============================= ================================ ================== 5 29 95.9 32 GTGTTCCCTGTATATACAGGGATAAACCG # Left flank : GCCCAAAGTACTGTGGATAATTCATCATCAGTCACTTGCCCAGCAGGGAATCCACCACCTGGCGTTGATACGCGTTTTTTAAGACTTTCAAACAGACTCATGCCATCTTTCATTTGCGGTGTCGGTAAATTAATATCGGCATAACAGAATGGTAAACAAAACAATGATAAAAATAGAATGGAAACGGTCTTCCGTAAACCCCAAGGCATAACATACTCCTGAACTTTCGGTAATAGCGTGGTGATATCTTATTGCTAATGATCACAATTATCAATATCAAATAATAATAATTATCATTTTTAAGCTAAATTAAAATTATTAAAATAATCAATATAGTTATTGTTAGCGACCGATTCGCTAATATCAGCTTTATAACATTAATTATGCTGTTAATAAAAATATCGGTTAAATCAAAATGATTTGATTAAAAAACAACCTAAAAAGTTGGTAAAAATTTTAATGCCACTATTTTAATTATAAAACAAACAGTTATAATTAGA # Right flank : ATAGTAGTCATAAATTTTTCCTACAGTGCTACAATTGGTTGGTATTTATAAACAAAATTTAGCCACGGTTATCGACCTGTGGAATGATTTGCGAGAAAAAACAAAATCACCTGATAAAAAGCAACTATACTCTATTACCATTACAAAATTGCAAGGCACGCAAAGGTGGGCAGTCAAGGTCTTAACGATTCAGATACCTGCTCATAACCAAATATCTATTTACACTCATTAACACAAAAAATCAGATTAATAGAGCTATGTTGTATAAACTATATACATATTCACAATGGATATAAAGACAATGTGAGGATGTAGTATGACCAAGCAAGTAGCTGTTTTAGGAGATATGACCAATTATGGTGGTAGGATTATCACAGCGTCAGGGAATGGCTATTGTGGTATGGATGGTGTTGCTCTATTAGGTGACTTGGTATCCTGCCCTAAATGTAGCAGTACTGGCAGAATCATTGAGGGAGCAAACAATTTTATTATCGATGGTA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATATACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: R [matched GAGTTCCCTGTAGGTACAGGGATATACCG with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //