Array 1 249190-253117 **** Predicted by CRISPRDetect 2.4 *** >NZ_UKZF01000002.1 Klebsiella pneumoniae strain EuSCAPE_IT323, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 249190 29 100.0 30 ............................. CTCACGCTGATACCTCGGAAAAAGACGGGC 249249 29 96.6 32 .G........................... GCGGGCTGGGTTTTGTCGACTCTGCCGATCCG 249310 29 100.0 32 ............................. TAATATTGATAAATTCGATGAAGTAACCGGAA 249371 29 96.6 32 ............................A TCGAAGTACCAGCGCCGCACCGTGTTTTTTGC 249432 29 100.0 32 ............................. GTGGCCGGTGCTGCCAGTACGGTTACCGAAGT 249493 29 100.0 32 ............................. CATCCACGCTTCTGGCCACCAGGCAGATAATC 249554 29 100.0 32 ............................. GTGCTCCTCTTCCAGATACTGGGCCAGGAGCT 249615 29 100.0 32 ............................. TACAGGACGACAGCATCCTGGAACATTTCGAC 249676 29 100.0 32 ............................. CTCTGCGTGTGCGCCTCCGCTACGAGGTGACG 249737 29 100.0 32 ............................. TGAATATTCATTTACTAAATTAGAGACAATTC 249798 29 100.0 32 ............................. CGGATTAAACGTAAGGCCGCGCGCTGGCGTAA 249859 29 100.0 32 ............................. GTGGTTTGTTACCGTGTTGTGTGGCAAAAAGC 249920 29 96.6 32 A............................ GAACGGAGGAATATAAGAACAAAAGCCCGCAG 249981 29 100.0 32 ............................. TAAACCGCTGGCGTGGTCAGTTGCGTGGCGGT 250042 29 100.0 32 ............................. GGCGCCGGCCTGATCACTATCGGGTAACGGTG 250103 29 100.0 32 ............................. GGCCTGAACCAGAGCATGATCTACACCTGGAA 250164 29 100.0 32 ............................. ATTGGGTAGAGCAGGCGAACGGATGTCTTTTT 250225 29 100.0 32 ............................. TTTTCACGGTCGAAGTTGTGCATGCTTTCTGC 250286 29 100.0 32 ............................. TCGACGCCCCGGTGTGGGAAGACTTTGGCACC 250347 29 100.0 32 ............................. CAGCGCATACGGGTTAAACCGGATCACCTCTT 250408 29 100.0 32 ............................. ACATAGCGCCCGATACGCAGCGCCAGCGGGTA 250469 29 100.0 32 ............................. GATCGATCGTTATTGTTGAACCGCACTATGGT 250530 29 100.0 32 ............................. CTTTTAATAATATCATCGGCAATGTCCTTATC 250591 29 100.0 32 ............................. CGGGACCGGATCCGCGTGGGCGACCAGGATTA 250652 29 100.0 32 ............................. CACCGATATTCAGTGCGCCAACGCCATAGCAA 250713 29 100.0 32 ............................. CCGAGGTTTTTCATACCTTCGGCAGTCGTAGA 250774 29 100.0 32 ............................. CGGAAATTTTGATTAGTTGAATCTGTGCCATT 250835 29 100.0 32 ............................. CCGACTTGGGACGAGGATCCGGCGGAATGTCG 250896 29 100.0 32 ............................. TAATGGCAAAACCATGACCTGATCCGGGCGTC 250957 29 100.0 32 ............................. CCTGAATCTTCACTTCGTCGATCATTCTGCGC 251018 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 251079 29 100.0 32 ............................. GTAACGCAGACGGCGAACGTCGGATCCATTGG 251140 29 100.0 32 ............................. GACCAGAAAGCCTGGGCATTGTTCCGCTCATT 251201 29 100.0 32 ............................. CCCCCGGCCGCGTGGCCGATTGCCATTACCGC 251262 29 100.0 32 ............................. TATACAGTATTATCATAGCGAATTCCCATCGG 251323 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 251384 29 100.0 32 ............................. GCACCAACGTTTACGGTGCGGTGGTGAAACAA 251445 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 251506 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 251567 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 251628 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 251689 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 251750 29 100.0 32 ............................. TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 251811 29 96.6 32 ........T.................... ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 251872 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 251933 29 100.0 32 ............................. CTGCAGGTAAATGACTGGATGGGGGAAGAGGT 251994 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 252055 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 252116 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 252177 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 252238 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 252299 29 100.0 32 ............................. TCCCCTACCACCCACTGAGCAAACTGGTAGCA 252360 29 100.0 32 ............................. CAGATACCAACGGTTACTACGGCAATCAGCAC 252421 29 100.0 32 ............................. AAGGTTGACCTGTTGTCGGCAACCATCGAGCC 252482 29 96.6 32 .........A................... GAGGCGCGCGTTGTCGTCGGTGAGATGCGCGA 252543 29 96.6 32 .....A....................... GCCATTCGTGCTTCTTCGCTTTGCTGCATCCA 252604 29 100.0 32 ............................. GAATATAAAACCAGATTCCATATAGCCCTGTG 252665 29 100.0 32 ............................. CCGGTTACGGGGATGACTGCAATTCGCTCCTG 252726 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 252787 29 100.0 32 ............................. GCGGCGTCAGGTGTGTGGCAGAAAATTATTGC 252848 29 100.0 32 ............................. TCGTCTGAGTTCCGGCTTACGCCGTGCCGACA 252909 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 252970 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 253031 29 96.6 29 ............T................ GGGTTCACTTGGGTGAAACTGAACTAACT 253089 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 65 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AGGTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTA # Right flank : CGTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGATTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //