Array 1 32010-33208 **** Predicted by CRISPRDetect 2.4 *** >NZ_NYDZ01000026.1 Listeria monocytogenes strain CFSAN044751 CFSAN044751_contig_0000026, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 32010 29 100.0 37 ............................. CAATGCTTAAACCGAGAGCATCAAATTGTTCCCATGC 32076 29 100.0 36 ............................. ATTACAGTACAAGCAAGGGTTATTGAGTTAAATATT 32141 29 100.0 35 ............................. ATTAATGATAAGAGCGGAAAGAAAACTTTCAAGGG 32205 29 100.0 37 ............................. TCCCCCTTAAGATACAAACTCGATTTGACAGGTGCAG 32271 29 100.0 36 ............................. TCGTTTATGACCTTATGAAAGAGTTAACACCTCGAC ACT [32283] 32339 29 100.0 36 ............................. CTTCCTACTTTTTGACATAAAAAATAAGCCGAGTTG 32404 29 100.0 36 ............................. AAGTTCAAAACCTCCCACACCCGCTATGAATAAATT 32469 29 100.0 37 ............................. TTCGTAATTTTACGATTATACTTTTTAGTCAAATTAC 32535 29 100.0 35 ............................. GTAACAAGTAGTGTTATACCTGCAACAATACCAGT 32599 29 100.0 36 ............................. TGGAAATGGGAAGAAAGAAATGCACTGATTGTAGAG 32664 29 100.0 36 ............................. GTCCACATCGACAATAAAAAACACATTGTATCACTT 32729 29 100.0 36 ............................. CTGGTTACTCAACTGGCGACAGTAATACACCTCAAT 32794 29 100.0 34 ............................. TTTGGATAGGTTGTTTCTGATAAATAGGTTCACG 32857 29 100.0 34 ............................. AGAAAAAAAACATCTTTCCAATTTGTTGTTTTGC 32920 29 100.0 37 ............................. ACAAGTGCTAGAACAGAAGTTATAATTTGAACATTAC 32986 29 100.0 34 ............................. AGAAGCGTTAGCGGCATTGTTCGAAAGTAATTTA 33049 29 100.0 36 ............................. TATAAAATATTGCCCAATGTGCGGAAGGAGTTTGGA 33114 29 100.0 37 ............................. AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG 33180 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 19 29 100.0 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : GT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.41 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 7756-5182 **** Predicted by CRISPRDetect 2.4 *** >NZ_NYDZ01000006.1 Listeria monocytogenes strain CFSAN044751 CFSAN044751_contig_0000006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================================= ================== 7755 36 100.0 30 .................................... GCAATAGACCAGTTAGGTGTCACAGGTGCG 7689 36 100.0 30 .................................... GATAGTAGTATAATAACTGTGCTAATATGG 7623 36 100.0 30 .................................... TTCGTACCATAGTATACACATGCAGGGGCG 7557 36 100.0 30 .................................... CATATAGATGTTTCCTTTCTACTCGTATAT 7491 36 100.0 30 .................................... AAATATTATTCAATGCTGTAACTGTAAAAG 7425 36 100.0 30 .................................... TACTTTTATTGTCTGCTAAGAATACTACTA 7359 36 100.0 30 .................................... ATTGTACAAATTCCAAGTAACTCATCATTA 7293 36 100.0 30 .................................... TTTTTCACGTTTGTACTGTCTCTCCTCGTA 7227 36 100.0 30 .................................... TAACTTTAGATACTGCTAAAGAATTAGCAA 7161 36 100.0 30 .................................... TGTCTGAATGTAGTTAATATCTTCAACTTG 7095 36 100.0 30 .................................... CTTCAGTTTCACCTGTGAATACGCCGTTTA 7029 36 100.0 30 .................................... GCGCTTCAGTTTCAGCATTGGTCTTCTTAG 6963 36 100.0 31 .................................... TCTCTTGCATTTGGTTCTGAATAATCTCGTA 6896 36 100.0 30 .................................... AGAGCAATGTAGTCATTCAGCCAATGCCCT 6830 36 100.0 30 .................................... ATATGGGGGCTTATTGTATGGCTAATATAC 6764 36 100.0 30 .................................... ACGGGGCATTTAATGTTGGCAAGCGCAATT 6698 36 100.0 30 .................................... TCCTCAGATAAGGTTTAGTACGCAAGACTC 6632 36 100.0 30 .................................... TCCACTTCGACGCTGGACGGGCTCTCCTCA 6566 36 100.0 30 .................................... CAATGCTTGGGGCTATGATGGCATGGATAA 6500 36 100.0 30 .................................... CTCTTTTCGATATTCCGGAAGAGGTACTCC 6434 36 100.0 30 .................................... CTTTTGTGTCTTCGGTAGCTTTGTCCATTA 6368 36 100.0 30 .................................... CCAGAGTCGCTTTTTCTTCCGGCCAGTCTG 6302 36 100.0 30 .................................... GTGTGTTATCTATTTGTAGCGTGGGTGTAT 6236 36 100.0 30 .................................... ATATACAATGTCTAAGCTTAATCTTTCGGT 6170 36 100.0 30 .................................... GAAATAATATTGATAATATCGCTCTTGCTA 6104 36 100.0 30 .................................... AGTATTTATTATCTCTATTACTTTTGTATA 6038 36 100.0 30 .................................... CGTATTCAAAAGTATATCCGCTAGCCTCAA 5972 36 100.0 30 .................................... TAGGTTTAGGGAGTAAATTAGCTCCTTTGG 5906 36 100.0 30 .................................... GGTAAAACAAGCATCGGCGAAGCAGTAACA 5840 36 100.0 55 .................................... TCCTAAATCTGAAAACAAAAACTACGAGTTGTTTTAGAGCTATGTTATNNNNNNN 5749 36 52.8 30 NNNNNNNNNNNNNNNNN................... AAAGCAATAAATCAGATCATAAAGGAGCCT 5683 36 100.0 30 .................................... CGACGGAAAAATTAGACGACGCTAATGTGC 5617 36 100.0 30 .................................... GGGCAACGATATTTGTAGATAACAGGGAGT 5551 36 100.0 30 .................................... TACGATGTTAAGCGGTGGAGTAGATCAGTA 5485 36 100.0 31 .................................... TATAGTCTGTTTTTTCGTAAGTGAGCAGCGC 5418 36 100.0 30 .................................... TTGGGCAAAATGACCGTAATAAATCCATTC 5352 36 100.0 30 .................................... TTAGCACTTATATAGAAGCCCCGCCCCTAC 5286 36 100.0 30 .................................... AGTGATGGGGAAGAGATTGAACTTATGTTT 5220 36 86.1 0 .............A.....C.....A.A.......G | C,A,T [5185,5188,5193] ========== ====== ====== ====== ==================================== ======================================================= ================== 39 36 98.4 31 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACAGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : ATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATGTAAGTAAAGAGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAGAAATGAAAACCGATATAACTTTTAGCACCATTCG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [17-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //