Array 1 30631-31688 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP084875.1 Klebsiella africana strain 200023 plasmid pKa_200023_1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 30631 29 100.0 32 ............................. TTCCTGTTCGGCTTCGCGATTATTTCCACCTT 30692 29 100.0 32 ............................. AGACCGGTATGGAAGCGAAAACGGCAACCTTC 30753 29 100.0 32 ............................. AATTGGGCTACCGCATTATTCCACCCTCTGAT 30814 29 93.1 32 ............CA............... CTAATCAGCGGTATATTTTTTCTAATCTGAAA 30875 29 89.7 31 ............CT.T............. GACAGTCACTATGTTCGGTATGTTTAAAAGA 30935 29 89.7 31 .....T......CT............... CTCTGAGGATGATATGCACCGGCACAGGTGC A [30962] 30996 28 86.2 30 T............A..-T........... TGACTTTTAGTAGTGCTTTTTTTGTTTTTT 31054 29 89.7 32 ..C.........CC............... GCCATGCAACGTCTGAACGTCCGAAACATCCC 31115 29 93.1 32 ............CA............... CAGGTTATACTGGCAAAACGTCGATGGCTCTC 31176 28 89.7 32 .....-......CT............... TCGATGGCAACCACCAGGAACAATAAAACCCT 31236 29 89.7 32 .A......T....T............... AGCAGTTCGAGGAATAGTGACAGGCAGTGCAG 31297 29 93.1 31 ............C..A............. TTCCCTGCACTAAGACGCTGGTGGTCGACAC 31357 29 89.7 32 ............CA............T.. CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC 31418 29 96.6 32 .............C............... GCTGGATTTCCGTCAGTTGGTCAGCTGCTGCT 31479 29 100.0 32 ............................. TGACTTTTGCGCAGCCTCAGGGCTCCGGTTTG 31540 28 89.7 32 .....-......CA............... AACAATTTGAAGTTTCTGCGCCAGGTCGTTTC 31600 29 93.1 32 ............CA............... CACTACCAGATCCGAATGGACACCCGTAATGA 31661 28 82.8 0 ............CAC.......-.....A | ========== ====== ====== ====== ============================= ================================ ================== 18 29 92.6 32 GTATTCCCCCCGTGTGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAGGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACTGGCGCAGAACTCCGCCATCGCATGAGTATTAAAAATGCGACTGATGAAGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGGGGGCATGCGAATCATAACTGCGGTCTGGTTGAGGCTCACTGGACAGTAACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCTCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATTATCAACCGGTTATTTTTAGA # Right flank : ACATAAAAACCGCAATGGTGGGGCTTTTGTTATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCTTCAGGATAACCCACATTCTGTCATATCTTGCAGGTTGCAATCAGAAAAGGCCTTACGTCGATAAATTCATGCCTTGAGCTGGTAAGGAAGTATGACGTTATAACTCTGCATTTCTGGTTGATTAAGGTAGGGCGGCATTCCTGCTTTAAAAACAATCACTAATTTTGAACGGTAGTCGTCTTGATCCCAACTGCTACCTGATGGACTAGGCACCTGCAAAGAACCAATTTATACTGTTTATATATACAGTATTTTTAGGTGGTCGGAGGTTGTGCCTATGTTCTTAATTCCAATGGAAAATCCTGAGAAAATCGCCATCCCTTTATTTCTCGAGCGGTGTGCAGCTGGCTTCCCCAGCCCTGCCCAGGATTATACTTCCAGTGAGCTAGACCTGAACGATTATTGCATCAGGCATC # Questionable array : NO Score: 5.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.63, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.33, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [9-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1038325-1040061 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP084874.1 Klebsiella africana strain 200023 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1038325 29 100.0 32 ............................. GATGTGTGCGAAATATTCAATCTTGACAGCTA 1038386 29 100.0 32 ............................. TTATGCCGTGCAGGAGCGAATTGCGGTAATCC 1038447 29 100.0 32 ............................. GAGCCTGTATTGATTGCGTCCTATCACCAGGC 1038508 29 100.0 32 ............................. GGTGGTGGTGGAGTAAATCGAACCAGGAAATT 1038569 29 100.0 32 ............................. TAGTCCCGCAGGTGTTCAGGCTGCTCTCTGGC 1038630 29 100.0 32 ............................. CCGACTATCACTGCCGGCGGCCAGCACGTAGG 1038691 29 100.0 32 ............................. ACGGGGAGCCGCGGTTGCATATCAAAGCGCAG 1038752 29 100.0 32 ............................. GCGTCGTATTCGCTCTGCAGTAGTGGGTCGGG 1038813 29 100.0 32 ............................. CGATTCAAACTCGGTGCCTAACTCCCCATCCG 1038874 29 100.0 32 ............................. TGCGCGTTTTATAGTTGCGGTCTGCTGGCGTC 1038935 29 100.0 32 ............................. AGGTGGCCCTGACAATAAACCTGGCTCCAGTA 1038996 29 100.0 32 ............................. AAATCTTAGAGGCTATTAGGTATTGGAATAAA 1039057 29 100.0 32 ............................. ATATTTGCCGCCACGCCGGAGAGCTGCTCCAC 1039118 29 100.0 32 ............................. CTGGCGATCATTAACGAGCCGCTGGGTAAAGA 1039179 29 100.0 32 ............................. TGTAGTTTTTCCTGAGGGTTGACGCGGACCGT 1039240 29 100.0 32 ............................. GATAAACGGGGAGCATTACGACCTGGTGCCGT 1039301 29 100.0 32 ............................. AAGTTCAGCAATATCGGCGTGCAGATCATGAA 1039362 29 100.0 32 ............................. TCGAAAATCCTCGGCATCGATAACTCGACGAT 1039423 29 100.0 32 ............................. GCGGTTGAGTGAATGAGCTGGCTCTTTTCGCA 1039484 29 100.0 32 ............................. AATAGCTCGGACTCCTTCGCGGCGCGCTCAAT 1039545 29 100.0 32 ............................. CAGAAGCGACCGGCGAGGTTGTCCGGCATGGT 1039606 29 100.0 32 ............................. GCTGGTAATATCCTGCTGGGTTCGCATTACAA 1039667 29 100.0 32 ............................. GATTTTTCCGGCGTTTCCAGCTTTTCGGACGC 1039728 29 100.0 32 ............................. GATATGCCGCCGATGATGCATTTTCGAGCGAT 1039789 29 96.6 32 .......A..................... TAGAATCACCAATTCGGTGATTACCCATTGTG 1039850 29 100.0 32 ............................. AGTGCCGAGCTGGAATCCCGCACCGTGTGGCT 1039911 29 96.6 32 .........................G... TGCTCCTGCTGCTTGTCGTACTGGCTGCTGAT 1039972 29 100.0 32 ............................. AACATCACCCGCAGCGCTATCCCGCCGCAGAT 1040033 29 75.9 0 ...........ATTC.....A....G..C | ========== ====== ====== ====== ============================= ================================ ================== 29 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGGCGGTGGAAATGTCGTGATGGCCTGGGCGACGAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGTGAAAACCGTCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAAATTGTTGGGATAAAGTTGGTGAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAACATATCTTTAGT # Right flank : CGCCACTAACTTCATCGAGCCTTATGGTGAGGACGAAAGACGACTGAAAATAAGTATCACTACCTGCCGCTCTTTAGCGTAATGCCCCCTTAATTAGCCGATATCACTGCTTTTTCACCGTCTCCTGGAGCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTATTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTGGCAGGGATCGCTGAACGCGTTGTCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATCATCTTCAGGCCCCCGGTTGTAATAGGGCCATGAATACCCGCCACCATACAGCGTAAAATCGGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //