Array 1 49328-50656 **** Predicted by CRISPRDetect 2.4 *** >NZ_AARP04000013.1 Listeria monocytogenes FSL N1-017 cont5.13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 49328 29 100.0 37 ............................. CAATGCTTAAACCGAGAGCATCAAATTGTTCCCATGC 49394 29 100.0 36 ............................. ATTACAGTACAAGCAAGGGTTATTGAGTTAAATATT 49459 29 100.0 35 ............................. ATTAATGATAAGAGCGGAAAGAAAACTTTCAAGGG 49523 29 100.0 37 ............................. TCCCCCTTAAGATACAAACTCGATTTGACAGGTGCAG 49589 29 100.0 36 ............................. TCGTTTATGACCTTATGAAAGAGTTAACACCTCGAC ACT [49601] 49657 29 100.0 36 ............................. CTTCCTACTTTTTGACATAAAAAATAAGCCGAGTTG 49722 29 100.0 36 ............................. AAGTTCAAAACCTCCCACACCCGCTATGAATAAATT 49787 29 100.0 37 ............................. TTCGTAATTTTACGATTATACTTTTTAGTCAAATTAC 49853 29 100.0 35 ............................. GTAACAAGTAGTGTTATACCTGCAACAATACCAGT 49917 29 100.0 36 ............................. TGGAAATGGGAAGAAAGAAATGCACTGATTGTAGAG 49982 29 100.0 36 ............................. GTCCACATCGACAATAAAAAACACATTGTATCACTT 50047 29 100.0 36 ............................. CTGGTTACTCAACTGGCGACAGTAATACACCTCAAT 50112 29 100.0 34 ............................. TTTGGATAGGTTGTTTCTGATAAATAGGTTCACG 50175 29 100.0 34 ............................. AGAAAAAAAACATCTTTCCAATTTGTTGTTTTGC 50238 29 100.0 37 ............................. ACAAGTGCTAGAACAGAAGTTATAATTTGAACATTAC 50304 29 100.0 34 ............................. AGAAGCGTTAGCGGCATTGTTCGAAAGTAATTTA 50367 29 100.0 36 ............................. TATAAAATATTGCCCAATGTGCGGAAGGAGTTTGGA 50432 29 100.0 37 ............................. AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG 50498 29 100.0 36 ............................. GTGTAATTCTTAATTCCGTATTGATTCGCTAGTTTT 50563 29 100.0 35 ............................. TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT 50627 29 93.1 0 .......................A....C | C [50650] ========== ====== ====== ====== ============================= ===================================== ================== 21 29 99.7 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : CGTCTTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACTCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTCTCCGCCATTCCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGTGTCTGTACTTTCTTATTCGCAAGTAGTTCTTTCTCCACACCAAACGTCTTGGCTGCAAGGTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTCCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 312885-315500 **** Predicted by CRISPRDetect 2.4 *** >NZ_AARP04000001.1 Listeria monocytogenes FSL N1-017 cont5.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 312885 36 100.0 30 .................................... GCAATAGACCAGTTAGGTGTCACAGGTGCG 312951 36 100.0 30 .................................... GATAGTAGTATAATAACTGTGCTAATATGG 313017 36 100.0 30 .................................... TTCGTACCATAGTATACACATGCAGGGGCG 313083 36 100.0 30 .................................... CATATAGATGTTTCCTTTCTACTCGTATAT 313149 36 100.0 30 .................................... AAATATTATTCAATGCTGTAACTGTAAAAG 313215 36 100.0 30 .................................... TACTTTTATTGTCTGCTAAGAATACTACTA 313281 36 100.0 30 .................................... ATTGTACAAATTCCAAGTAACTCATCATTA 313347 36 100.0 30 .................................... TTTTTCACGTTTGTACTGTCTCTCCTCGTA 313413 36 100.0 30 .................................... TAACTTTAGATACTGCTAAAGAATTAGCAA 313479 36 100.0 30 .................................... TGTCTGAATGTAGTTAATATCTTCAACTTG 313545 36 100.0 30 .................................... CTTCAGTTTCACCTGTGAATACGCCGTTTA 313611 36 100.0 30 .................................... GCGCTTCAGTTTCAGCATTGGTCTTCTTAG 313677 36 100.0 31 .................................... TCTCTTGCATTTGGTTCTGAATAATCTCGTA 313744 36 100.0 30 .................................... AGAGCAATGTAGTCATTCAGCCAATGCCCT 313810 36 100.0 30 .................................... ATATGGGGGCTTATTGTATGGCTAATATAC 313876 36 100.0 30 .................................... ACGGGGCATTTAATGTTGGCAAGCGCAATT 313942 36 100.0 30 .................................... TCCTCAGATAAGGTTTAGTACGCAAGACTC 314008 36 100.0 30 .................................... TCCACTTCGACGCTGGACGGGCTCTCCTCA 314074 36 100.0 30 .................................... CAATGCTTGGGGCTATGATGGCATGGATAA 314140 36 100.0 30 .................................... CTCTTTTCGATATTCCGGAAGAGGTACTCC 314206 36 100.0 30 .................................... CTTTTGTGTCTTCGGTAGCTTTGTCCATTA 314272 36 100.0 30 .................................... CCAGAGTCGCTTTTTCTTCCGGCCAGTCTG 314338 36 100.0 30 .................................... GTGTGTTATCTATTTGTAGCGTGGGTGTAT 314404 36 100.0 30 .................................... ATATACAATGTCTAAGCTTAATCTTTCGGT 314470 36 100.0 30 .................................... GAAATAATATTGATAATATCGCTCTTGCTA 314536 36 100.0 30 .................................... AGTATTTATTATCTCTATTACTTTTGTATA 314602 36 100.0 30 .................................... CGTATTCAAAAGTATATCCGCTAGCCTCAA 314668 36 100.0 30 .................................... TAGGTTTAGGGAGTAAATTAGCTCCTTTGG 314734 36 100.0 30 .................................... GGTAAAACAAGCATCGGCGAAGCAGTAACA 314800 36 100.0 30 .................................... TCCTAAATCTGAAAACAAAAACTACGAGTT 314866 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 314932 36 100.0 30 .................................... AAAGCAATAAATCAGATCATAAAGGAGCCT 314998 36 100.0 30 .................................... CGACGGAAAAATTAGACGACGCTAATGTGC 315064 36 100.0 30 .................................... GGGCAACGATATTTGTAGATAACAGGGAGT 315130 36 100.0 30 .................................... TACGATGTTAAGCGGTGGAGTAGATCAGTA 315196 36 100.0 31 .................................... TATAGTCTGTTTTTTCGTAAGTGAGCAGCGC 315263 36 100.0 31 .................................... TTGGGCAAAATGACCGTAATAAATCCATTCG 315330 36 97.2 30 T................................... TTAGCACTTATATAGAAGCCCCGCCCCTAC 315396 36 100.0 30 .................................... AGTGATGGGGAAGAGATTGAACTTATGTTT 315462 36 86.1 0 .............A.....C.....T.A.......G | A,A,C [315487,315493,315496] ========== ====== ====== ====== ==================================== =============================== ================== 40 36 99.6 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACAGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATGTAAGTAAAGAGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAGAAATGAAAACCGATATAACTTTTAGCACCATTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //