Array 1 249459-252108 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGYDO010000002.1 Klebsiella pneumoniae strain MRSN366562 MRSN366562_contig00002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 249459 29 100.0 32 ............................. GAGCAGGCACCCGCCGCAACGACGAAGAGCGC 249520 29 100.0 32 ............................. AAATCAGCCAGCACCACGATTCTGGGAAATTT 249581 29 100.0 32 ............................. ACAGGCTTACCCGTATTGAGACGGTTGCTGAA 249642 29 100.0 33 ............................. GAAACCCCATCAGATGACCCTCCCCATGTTGGC 249704 29 100.0 32 ............................. TTGCCTGGTCTGCTTGGTGATGATCCGTGGTA 249765 29 100.0 32 ............................. TACAGAACGACTGAGGCGGCGTGTATTGCATA 249826 29 100.0 32 ............................. GATCTTAACTCTATTGCCAATGGCGCAATTCA 249887 29 100.0 32 ............................. GGCGATGCGCGCTCTGCTGGCTATCGGTAAAA 249948 29 100.0 32 ............................. AATGCAGCAACCGGCAAATATATCGCCGGTAA 250009 29 100.0 32 ............................. GGGCTGCCGCACGCCTGGGACGAGTCGAGCCC 250070 29 100.0 32 ............................. CCGCAATAACAAAAATAAATGAGGGTTAAAGT 250131 29 100.0 32 ............................. GTAAATGGGAATGAGTAGAAGAGCGTCATTGG 250192 29 100.0 32 ............................. CCCCCGCGCACATGCTTAAACGCGCTATCACG 250253 29 100.0 32 ............................. GGCATCTGTTGTGTAATGTTGAGTTTTTTTCA 250314 29 100.0 32 ............................. CAGGTTAAACATGTAAAAAATGACCGTCGCCG 250375 29 100.0 32 ............................. CACATTGCCCGGTCTGAAAAGTATTTGAAAAT 250436 29 100.0 32 ............................. TCCGCACAGTCAAACGCTCCAGACACCAACCC 250497 29 100.0 32 ............................. CCGGAACACCACCAGTAACAGCTACTGTAGGC 250558 29 100.0 32 ............................. TGACCCTGTTGATTTTGTTCCAGGTAATACGT 250619 29 100.0 32 ............................. TTAACCTCGTCGTTCTGGTTTCCGCCCAGGAT 250680 29 100.0 32 ............................. GAACCTGAATTCGAAGGGTGGGTCATCCTTCC 250741 29 100.0 32 ............................. GGACCCCGAGCGACCCGGTCACCCTCCGACCT 250802 29 100.0 32 ............................. CCGTCGAACGGCGGTTATATCCATCTTGAGTC 250863 29 100.0 32 ............................. ACCGATCCCACAATTGCGGCGGTTGAGATTGA 250924 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 250985 29 100.0 32 ............................. CCGATTGTCTGGCGGTCGAGCGCCATTTGCTC 251046 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 251107 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 251168 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 251229 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 251290 29 100.0 32 ............................. CCCTCCGCTTTCAGGGTGTGGCTGATATCACC 251351 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 251412 29 96.6 32 .............A............... TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 251473 29 100.0 32 ............................. ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 251534 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 251595 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 251656 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 251717 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 251778 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 251839 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 251900 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 251961 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 252022 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 252080 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 44 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCCTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : CGTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 35036-33852 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGYDO010000026.1 Klebsiella pneumoniae strain MRSN366562 MRSN366562_contig00026, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 35035 29 100.0 32 ............................. GGGGCCAGCTCCCGGACGAGAAATGTGACGCC 34974 29 100.0 32 ............................. CGATTACGGAGTCGTTCACAAACCGACCACCG 34913 29 100.0 32 ............................. TCGGTTTCGAGCGCGGTGTATTCCTGCCAGGC 34852 28 89.7 32 ..........-.TG............... CGATTACTGAGTCGTTCACGAACCGGCCACCA 34792 29 89.7 32 ........T...TG............... CAAAAATGCCAGGCACTGACTAAACCGCCGTC 34731 29 93.1 32 ............TG............... TGACTTTTGCGCAGCCTCAGGGCTCCGGTTTG 34670 29 100.0 32 ............................. GCACCCTCACGGATACCTTTTGCACAGTGTTA 34609 29 93.1 32 ............TG............... TTACCAATGGGGAAAAATCTTCATTTGTAACT 34548 29 96.6 32 T............................ ATAACTATCAGGGTAGATTCATGAAAAGGGTA 34487 29 93.1 32 ....C.......................C CTTAGAGAAGCAAAAACCCCACCGAGGCAGGG 34426 29 93.1 32 ............TG............... CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 34365 29 100.0 32 ............................. CAGCGTCTGAACGGACGAAACATCCCTGTTGA 34304 28 89.7 32 ..........GT.-............... ATGGGCTGGCGCGACTCAAATGCCCGTTTGGC 34244 28 93.1 32 ..........-.T................ CGAGCGCTCTCCTGGTAAATCGGTAGCTCGGA 34184 29 100.0 32 ............................. GCAGCGGCCTGACGATGATTGATATGAACGGC 34123 29 100.0 32 ............................. GAAAGTAGGGGCTACGCCGGAATTCCGAAGAG 34062 29 93.1 32 ............TG............... TTACTTTTTGGCAGTTGGTAAAACACTTTTAC 34001 29 89.7 32 ............TGA.............. TTCCGGACTCCTGTTTCCGGCAGTGGATTAAA 33940 29 96.6 32 .........................A... CACTACCAGATCCGAATGGACACCCGTAATGA 33879 28 89.7 0 ..............C........-....A | ========== ====== ====== ====== ============================= ================================ ================== 20 29 95.0 32 GTATTCCCCCCGCATGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTGCCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAATTCCAAAAGCTGGTGGATTTTAGTAGTGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : CATAAAAACCGCAATGGTGGGGCTTTTGTTATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCTTCAGGATAACCCACATTCTGTCATATCTTGCAGGTTGCAATCAGAAAAGGCCTTACGTCGATAAATTCATGCCTTGAGCTGGTAAGGAAGTATGACGTTATAACTCTGCATTTCTGGTTGATTAAGGTAGGGCGGCATTCCTGCTTTAAAAACAATCACTAATTTTGAACGGTAGTCGTCTTGATCCCAACTGCTACCTGATGGACTAGGCACCTGCAAAGAACCAATTTATACTGTTTATATATACAGTATTTTTAGGTGGTCGGAGGTTGTGCCTATGTTCTTAATTCCAATGGAAAATCCTGAGAAAATCGCCATCCCTTTATTTCTCGAGCGGTGTGCAGCTGGCTTCCCCAGCCCTGCCCAGGATTATACTTCCAGTGAGCTAGACCTGAACGATTATTGCATCAGGCATCC # Questionable array : NO Score: 5.52 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //