Array 1 72543-70046 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASUX010000004.1 Listeria seeligeri strain FSL L7-0950 NODE_4_length_297611_cov_132.512624, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 72542 29 100.0 35 ............................. ATAACTGTCTTTAATTGATTTTGTTCACTTTCATT 72478 29 100.0 35 ............................. GCATTAGAAATAGCTGTAGAAAAATTTCTTCTTAA 72414 29 100.0 36 ............................. ATCAATCTACTGTGGCGAAAATGAGACTTGCATCAC 72349 29 100.0 38 ............................. CATAACCTAGAAAGGTACAAATATAATGAAAAATGACC 72282 29 100.0 37 ............................. CCAATATTCGTGCGCGTTATAAAGCCATGGGAGTGGA 72216 29 100.0 35 ............................. ATAGATATCCGCTCCTTTCGTACTACGATTTTGGC 72152 29 100.0 35 ............................. TTCATTTGCTGAAATAACAACATGATAGTTTTTCA 72088 29 100.0 35 ............................. AGAAGAAAATAGACCAAAGAAGACGTGTTGTATAT 72024 29 100.0 37 ............................. AGAAGTATTCAGATACTACAAGCATTGGGTGACAAGA 71958 29 100.0 34 ............................. GATGCTGAAATGATAAAACTAATTTCTGATTTAT 71895 29 100.0 35 ............................. CTTGTTACTTTCAATGACATCGTGAGGCTCGATTT 71831 29 100.0 36 ............................. GTTACCGCTGTTTGTGTATAAAATATTCAGTCGACG 71766 29 100.0 37 ............................. ATGTATTGAACAAATTGAAAGGTTCCAAAGCTCCGAT 71700 29 100.0 36 ............................. AACTTTACGACCACCATATTTCAAAACTTTTTCCAT 71635 29 100.0 36 ............................. AAAATAATTAAAAAACGTTTCAATTTCATCACCTCC 71570 29 100.0 35 ............................. TATATGAACGGAGGTTTTGCTTTACACCCGTCAGC 71506 29 100.0 36 ............................. GCGACAAACAACACGTATAAAAACAAAAAATTAGCG 71441 29 100.0 37 ............................. TTTGGACATGATGCGAAATATGTACTAGAGAGCTATA 71375 29 100.0 37 ............................. CGGAGAAGTTAATTCTTTTGCCAGCCATAGGAGCGCC 71309 29 100.0 35 ............................. TCTTTAGTGCTACGATATTTAACGCGTTGCTTACG 71245 29 100.0 35 ............................. AGGGATTTGATAATACCACCAAGCGCTTTAAAACC 71181 29 100.0 36 ............................. GTTGTTGGGCTTTTTATATTGAAAAGTAATATTTTT 71116 29 100.0 36 ............................. TCCTTATCTATTTATATTTTGTGTTCCTTTACTATA 71051 29 100.0 36 ............................. AAAAGAGGAATAGACTCTAAAGTTTACATTTTTAGG 70986 29 100.0 36 ............................. GGTAATGGATTCTATTGAAACATCGTATTTAGAACC 70921 29 100.0 36 ............................. TCGTGATTCCCCTAACGTGTTATCTTAATCGAAAAC 70856 29 100.0 35 ............................. GACGAAACCGACAGCCTGCTAGAGAACATAGCAGA 70792 29 100.0 36 ............................. GAAATAGTCTTCGTGTTCTTCCGCAACGTCCTTGAC 70727 29 100.0 37 ............................. ATCGTCACGGTTTGAAGTGCTTTAGTCAACGAAGAAT 70661 29 100.0 34 ............................. TTGTGCGAAAAACACAAACAAGATTTAATTTTAC 70598 29 100.0 37 ............................. TTTGTAGGGATTGCTATCCTTCCATTATTCCCGTTAT 70532 29 100.0 37 ............................. AATTGAGGGCCTAGTGGGGTAAAACCCGTGGAGGTTC 70466 29 100.0 37 ............................. CATTACAAATTTCGCACATTATTCCGCCACCTCTTCA 70400 29 96.6 35 .......C..................... GACGCAGGATTTGGTAAAGGCGTAGGTACACGCTC 70336 29 96.6 38 .......C..................... ACTGAATTGGACTTCGAACTCTTGGCCTGTCAAATAAC 70269 29 96.6 35 .......C..................... TATTTATTCAACCTCCATAAGTCCGCGCGCGGTAT 70205 29 96.6 36 .......C..................... TCAGGAGTGGTAATGTCTTCTGTTGCTACCACATCA 70140 29 82.8 37 ..A....C....C........TC...... GTGGTCACAGCCTTCTTATTGCCAGCAGGTGAGCCCC 70074 29 75.9 0 .......C.......CA.....CA...CC | ========== ====== ====== ====== ============================= ====================================== ================== 39 29 98.6 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : TTCAAGATTTGGTGGTGAATATATGTATGTAATTTTAATTTATGATATTTCTGTGGAAAACGGTGGGGCAAAGGTATGGCGCAATGTGTTTAAGATTTGTAAGCGATATTTAACACATGTCCAAAAGTCTGTATTTGAAGGTGAAATAACGCCTGCTCTTTTAGCGAAATTACGGATGGAGCTAGACAAATATATTCGTTCAGATATGGATTCAGTGATTGTCTTTTCCAGCAGGCAACAAAAATGGTTAGAAAAAGAATTTTGGGGACTGGCTGATGAAAAAACGTCGAATTTTTTCTGAATAAATATTTCTGTCGACCTCCAGTAGTGCAAAAAACACTGGAGGTCGACAGAAACGTGGGAAGCATTGGGGGAGAATGGTTTTTGGTGGATTTTCTTGTTTGAGGTGAGAAAATAAAAATAGGTTTTACCTGCTTTTTACAGCGGTCGACAAAAACAAGCCCGTGAGGTAAGATGGGAGTAGGGAAAGAATTTGGCGG # Right flank : CCACCCACCCTTAAAGCCAATAATCTGCTCTAAGGGTTTTTTATTCAAAAAACCACCCCCCAACCCTCCATTTTTTTCGTCCAGCGAAAATCGTTTTCGAAATACTTGTAACCGCTTGCAAGGTTGAAGCTCTATAACTATAATGAACGTAGTAATTCAGTCAGATATAATATTTTTTCAAAATTAGCTAACTGAAGAAATAGAAAACGGAAAAATGGGAATATTTAATTATGTTTTCATTTTAATCTAACAAAAAGGAGAGCTTAAGTATGAAAAAAATCGTATCAATCGGTTGTATTGTGGGACTTTTAATGCTTTTAGTGGGGTGTGGAAGTGAAGAAGCATCGAGTTCAAAAGTAGAGTTTTACACGGATAAAGGTGGAGAAAATGTTGGTATTTTGAATTCTATGTCAGATCAGATTGAAAAAGATGGAGGCGTTGGGTTTAAAACAGTGGGGTACACAGATGTGACTTCATATGAGACAGCGGTGCAACAGTCA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 83519-82321 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASUX010000004.1 Listeria seeligeri strain FSL L7-0950 NODE_4_length_297611_cov_132.512624, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 83518 29 100.0 36 ............................. ATATTAATTTGAGCGATGGTACATGTTTGGATCTGA 83453 29 100.0 37 ............................. TCGTAACTCGAGCTGAATCAACCAAAATGACTGATAC 83387 29 100.0 36 ............................. AAAGGATACACTGGTCAATTTAAACAAGAAGGTATT 83322 29 100.0 35 ............................. ATAGTTCTTCTTCTTTTCCTCTGTGTTCCTGTTCA 83258 29 100.0 36 ............................. AAGTTTAACACAAGACTCATTTTTAATCGTCTTGAC 83193 29 100.0 37 ............................. CGATTTGATTTGATTTTGAGAAGTCGACACGAACATG 83127 29 100.0 35 ............................. AAAGCCGAGTAGGCTTATTTTTATGCAAAAAAATA 83063 29 100.0 36 ............................. TTCGGTGTCATCATGATGTCGAAACGCAAGGCTTTG 82998 29 100.0 37 ............................. ATGCTTTCCCGGCTTCAACTGTTTTCTTTCCAACCCA 82932 29 100.0 34 ............................. TCCCCTGTTTGTAACTTTAAAAATCCGGGATGAG 82869 29 100.0 37 ............................. TAGGCATCACCCCCTAAATGGGATTTAGCCACCATCT 82803 29 100.0 39 ............................. ATAAAAATAAATAATTTTGCTAATGCGCGCTTGGTTTCA 82735 29 100.0 35 ............................. CTGTGTAGCTTCTTAAGAACAGTAGCCATGTGAGA 82671 29 100.0 36 ............................. TGACTTCTAAAAAAGTATGGACAATGGAACGTGCTT 82606 29 100.0 34 ............................. AGATTAAGTAGTTCCTGTATATGTTCTTTTGAAT 82543 29 100.0 35 ............................. GAGACTGATTGACACTGATTATTTGGTTTTAGACG 82479 29 96.6 36 ..C.......................... ATTGGCTACATGGAAGCAGTCAACTTCAAAACTATT 82414 29 93.1 35 ........................C...A TAATATTTTATTCGCTTGAATAGAGTAGGGTTCTC 82350 29 86.2 0 ........C....C..A...........G | T [82323] ========== ====== ====== ====== ============================= ======================================= ================== 19 29 98.7 36 GTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : AAAAGTCACCGTTCCATCTTTTTTCTCTTTTGTCTCTGCTTTGCTCGTCGTTGAATCATTCCCACAGCCCGCAATCAGTAGTAAAGTACAAAACACCACCATCAACTTCCAAACATTTTTCTTCATCCTTTTTCTCCTTTTTTCTATATAGTTTTTAGCAAAATAAAAACCCAGATAAATCAAAAAATAGCCCAAAAGCCATCTTCCAATCCATCTAGGTTATGCCCAAAATAGGTAACATTCCTGAGTGAGGTATTTGTTTATAGGATGATTTTAGCACAGATGGTAAGCGTTTACAAGTTTACGTATTTTCTGTCGATGTGTGGTAGCGTGGAAAGTACTGGAGACCGACAGATTTGCGGGATGCGTTGGGAGAGAATGAGAGTGGGGGGGATTTGGGTTTTGAATAGTAATTTTAGGAAGGTGGAAAGCCGATTTTGAGATAGGTCGACAAAAATAGTCTTGTGAGGTAAGATGGGAGTAGGGATGAAAATGGACGG # Right flank : CCTTTCAATCATGCTAGTAAAGCTGCAGAAATAATTTTTTCGAATTATAAATTCATCCAGTAACTAAAACATAGCTAGTAGCACTATCATAAATTTTCCAGTCAAAAAAATTAAAATCAAATTCTTTACTAGTTTTAAGGTATAAATCTTTTTAATAAAAAGTGAAAAATTTCAATAAATTATATAGCAAATGTTAAACAAAACACTAGTATTTTCAGTGTTTTGTTTTCGCTAGCATTCACTCTTTTTTTGTGTTAAATTAAACACAAACAACAGATGGGGGATGACAAAATGAGATTTAAAATAAATTGTGATTTCGACTCCAACATAATACCGAAAGACTACAGAGGTAAAATAGTCAGTTTATTCAAAACGGGAATAGAGAAATCTAGTCCAGAAAGATATAAAGATTTATTTGGTAGTAACAAGCGGAAAAATTACACTTTTTCGATATACCTGCCTAAGCCTAAAAATAATAAAAATGAAATTTATCTTGAAGA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 3 90686-89747 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASUX010000004.1 Listeria seeligeri strain FSL L7-0950 NODE_4_length_297611_cov_132.512624, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 90685 29 100.0 35 ............................. ACTGTTAAAAGTAGTTGCTGTTGCAATTCAATTTT 90621 29 100.0 35 ............................. TGGGAAGTTATTTTTTTTAATTCAGTGTGATGTTT 90557 29 100.0 35 ............................. ACTGACTCCACCCCGCTGAGGTATACTCTTGATTT 90493 29 100.0 38 ............................. ATTGGTACAGAAAATGTTCAAGGTGTGTCGATATATTT 90426 29 100.0 37 ............................. ACAAGAAGCGATTAAATTATGAGCTATTGAGGCGGAG 90360 29 100.0 35 ............................. TAGATATATCCATATCTATACTGAGCTATAGGGAC 90296 29 100.0 37 ............................. ACAAATGCCGTTTTTGCTAAAAATCAAATTGATAATC 90230 29 100.0 36 ............................. TCAAAATGAATTCAGGAAAAAACATGGTTGAATATT 90165 29 100.0 36 ............................. AATCCCATATCTAGTTGTTGTAAAGCATCTAGACTG 90100 29 100.0 35 ............................. AGTGGTATATTTATCGTAAACGGCTTTGGGTTTTA 90036 29 100.0 36 ............................. TTTTTTATTGGTATTTTGCTAGTTTCGCCGCAAAAG 89971 29 100.0 36 ............................. AAATAATTCGCGCTAATGGATAGGTTTTTTGCAATC 89906 29 100.0 36 ............................. TGACACAGAGGGGGAATTTGAAGGACATGATATTAC 89841 29 100.0 37 ............................. GATGCTGCAGCGTATATAATTTAATTGAGCTAATTTT 89775 29 93.1 0 ..........T.C................ | ========== ====== ====== ====== ============================= ====================================== ================== 15 29 99.5 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : GCGCAACAACTTCAGCCGATGTCCTGCTAGAAAAAGGCGCTGTAGAAGTTATTGCCTGCGCAACCCACTCGGTTATGGCCGGAAACGCAACCGAACGCTTACAAAACTCAAAAATCAAAGAAGTTATCACCTCCGACTCCATTGACCTACCAGAAGATAAACAATTTGATAAATTAACAACCATCTCCATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTTCAAGAAAACCGCTCATTGCATCCGTTGTTTTAAGAAAATCTATAAGCAGAGACTCAAATTGGGTCTCTGTTTTTTTGTACGTTAACTTCTGTCGACCGTTAGTAGTGTAGAAAACAAGGGGGATCGACAGAACATTGGATTCCTTTGTGGGAGAATAGGTTTGGTGGGTTTTTAGTTATGAAATTAAAGTTCGGTGCTTTGATTTTAAGAGGTTTTTTGGAGATCGACAAAAATAGGCGCTTGAGGTAAGATGGGAGTAAGAGGAAAAGTGAACGG # Right flank : GTCTCCCAGTCCACTTACTTCAAGTGACCAGAAGTGTTTTAACTACTTTTAATCATCCAAAAAACACCAAAGCGGAGGAAACACTTATGAAAAAAGCATTTATCCCGCTTCTATTTTTACTATTCCTACTAGCTAGTTGTTCCGCGCCCAATGAAAAATTAACAAAAAACACCAAGATTTTTAAAGAAGGCGTCATTAATGCGGATTATCAGATTCCACAAAACCTAGCAGAGCTTGAATCTAACAGTGAAGATATCGTAAAAGTGAAATTACTACAAAATAAAGAAAATGGCAAAAATAACAGCACAATAAGTGAAGTAGAAATTATCGAGAAATACAAAGGGAATTTCGAATCAGGTGAGAAAATCGACATTTCAGAACCTTGGCTTTTAAACACAGGAGAGTACCAAGCTGTGGAAAACTACATTGCACTTGAAAAAGGTCAAGAGTATATCTTGTTTTTAAGCGGAGGACATGACGGGGATAGAGTAAGTTCTATC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //