Array 1 1525194-1523030 **** Predicted by CRISPRDetect 2.4 *** >NC_008343.2 Granulibacter bethesdensis CGDNIH1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1525193 29 100.0 32 ............................. GCGGCTGATGTCAGGATGGCTGATATTTTTCC 1525132 29 96.6 32 ............................A TGCAGGCGATTGATCAGCACTCGGTTGTGGTC 1525071 29 100.0 32 ............................. CGCCGCTGATCATATATCGCAGCGCGGTCCAG 1525010 29 100.0 32 ............................. ATCGCTCGATGAACCGCCGTTCTTGGCTTCGA 1524949 29 100.0 32 ............................. TCTGCGCAGCCACCCGGAACCGTATTCTGAAA 1524888 29 100.0 32 ............................. GTGCCGAGGCAGGTCGTGAGACCGGTTACGGT 1524827 29 100.0 32 ............................. CCACCGCGCGCCAGATCGAGCAGCTGCGCATT 1524766 29 100.0 32 ............................. GTGGAAATAGGCCGTATGCGGGTAGGAAAACG 1524705 29 100.0 32 ............................. GCCAGCGAGGCACATGCGCGCGGCTTCGCGGT 1524644 29 100.0 32 ............................. GCCGCCACAATCGGTGCTGGCAGCAGCTCAGG 1524583 29 96.6 32 ............................T CTCTCTCCTGCTGATCTGGGTTCGATGCTACG 1524522 29 100.0 32 ............................. ATGCTGCTCCTGGATAGCGGATGGCCGCCTCG 1524461 29 100.0 32 ............................. GTAGAAATGCGATCTACATTCATCGGCTCAAG 1524400 29 100.0 32 ............................. AAAAATTCGAATTCTTCCTCGTCGCAGCAGGA 1524339 29 100.0 32 ............................. CGAAAACCCATGACGGGATTTTCGCAAAAATA 1524278 29 100.0 32 ............................. CCCGCGTTGCGCTCCTGCGCCATGCGCTGGCA 1524217 29 100.0 32 ............................. TCGCTGACTAATGGGAAAAAAAATAGAGTCTC 1524156 29 100.0 32 ............................. ACCTCTGTATCTAAGAAAGAAAGGGGAGCGCC 1524095 29 100.0 32 ............................. GTCCAGCACACTCAGCGCCAGCGCCCTGTATC 1524034 29 100.0 32 ............................. GTGCGGCCGTGATAAAAGCGCGCGTCGCGAGT 1523973 29 100.0 32 ............................. GCATCTTCTGTCCTGGATGATCGGTCGGCGTT 1523912 29 100.0 32 ............................. ACGCTCCGGCGTTATTGGTGATCCCACCGTTC 1523851 29 100.0 32 ............................. CCGCTACAGGGCGCTTCCCACCGAGCATTTTT 1523790 29 100.0 32 ............................. CGCCCATCTGAACATTTTACGAATGCGTGGAG 1523729 29 100.0 32 ............................. CAGTCGGTGACTGCTGATACAGCGACTGCGAT 1523668 29 100.0 32 ............................. GGCTGGTCGGTCCATGAAATTATTTGGCAAAT 1523607 29 100.0 32 ............................. ATTTCCGCCATTTATTTGCCTTAGTCGGCGCT 1523546 29 100.0 32 ............................. CCGATGCGATCATGCGACGTGTCAGCGATCAG 1523485 29 100.0 32 ............................. TCACTTAAATAGGGAAAATGCTGAGAGGTTGA 1523424 29 100.0 32 ............................. GATTTCGAGCCGCTCTACGCTGAACCCAGCGT 1523363 29 100.0 32 ............................. GCGCTGGGCGAGATACTGGTGTTGCGTGCGCC 1523302 29 100.0 32 ............................. ATCATCGCCCTCGATACCGGCGTTACCACAGG 1523241 29 100.0 32 ............................. GAATCACGAGGGAGCACAATATGCACACTGAC 1523180 29 100.0 32 ............................. ATAACGCCAAACCCGGGCTCCCTTGAGCAACT 1523119 29 100.0 32 ............................. GCTGATATTTGGCTATTCTCAGGAGTATCGCC 1523058 29 96.6 0 ........................G.... | ========== ====== ====== ====== ============================= ================================ ================== 36 29 99.7 32 GTGTTCCCCGCCTGCGCGGGGATGAACCG # Left flank : TCGGACGGGACTTCTTGGACGTATTATTCCCGCGATTGAGGACGTTCTTTCTGCTGCGGACATTCCACGTCCCGAGCCCCCACCCGAGGCTGCTCTACCCGCTTTTGACGAAGAAAAGTCTGGCGATGAGGGCCATCGCGGATGATGGTTGTGGTTGTCACCAATGCGCCGCCACGCCTGCGTGGCAGACTTGCTGCATGGCTGGTTGAAGTGAGGGCCGGTGTCTATGTCGGCAACTATTCGGCTCGGACGCGTGAAATGATCTGGCGCCAGGTGACGGAAGGTCTGGAAACAGGCGACGCCGTCATGGTGTGGAAGGCCCCAACGGATCAGGGATATGACTTCCTCACTTTTGGTCGCAACCGCCGCATGCCCATTGATTTTGATGGACTGAAGCTCGTAACTTTTCTTCCCGAAAAGTCGGCCTAAAAACCTCTTTTTCTGTCGGTAAGATCTTTGACAATGTAAAAAATATTTTGAATCAATTACTTATGCGAAGA # Right flank : ATTTGCCTGTATGGGCTACTTGGCGCGTTCATCCTTTCATCCGGCTGATGCCATTGTTGGCTGACGCCCTTCATGATCAGGTTCTCGATCGTCGCATGGCCACCAGCAACGATATCCGCGCCACGTTCCTTAACTACTTCGCCCGTAACGGGCATGAGGTGGTCGACAGTTCTCCGCTTGTGCCGCGTAACGACCCCACACTGCTGTTCGTCAACAGCGGTATGGTGCAGTTCAAGAACGTGTTCACAGGCCAGGAAAGGCGGCCTTACAGCAGGGCCACGACCTCCCAGAAATGCGTCCGCGCCGGGGGGAAGCATAACGACCTCGATAATGTCGGCTACACCGCCCGGCATCATACTTTCTTTGAAATGCTGGGTAATTTCTCCTTTGGCGATTACTTCAAGGAACAGGCGATCACCCATGCCTGGAACGTCGTTACGCGCGAGTTCGGTCTGCCGGCCGAAAAGCTGCTGGTCACGGTCTATCAGGATGATGACGAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCCTGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCCTGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-2] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1534716-1534139 **** Predicted by CRISPRDetect 2.4 *** >NC_008343.2 Granulibacter bethesdensis CGDNIH1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1534715 28 100.0 33 ............................ CCCGGGATACTGCCGGGGTCTACGCCTCTGACA 1534654 28 100.0 33 ............................ CTAAAACGTCTCGGCCTGCGCGGCCCTCAGTCA 1534593 28 100.0 33 ............................ TGCCATGCACCGCGCGGCGTGAGAGACGCGCTG 1534532 28 100.0 33 ............................ CAGCGCGGTCGCTTTTGTGACCGCAGCGCCCGC 1534471 28 100.0 33 ............................ TCCTCTGTCCGTGTGACACGCCTGACACGGCGG 1534410 28 100.0 33 ............................ AGCGTCCCGCGCGCTCCCTATAAACTATAGCAA 1534349 28 100.0 33 ............................ CCCCGGCTGCACGAGCAAAATTTGTCGCGTCAA 1534288 28 100.0 33 ............................ CGAGTTGCGCCCGGTTTCCATCGTCTCGGCCGC 1534227 28 100.0 33 ............................ TGGATCTGTTGATGAAGCGCGTGGGATAGCTGC 1534166 28 96.4 0 ....................A....... | ========== ====== ====== ====== ============================ ================================= ================== 10 28 99.6 33 GGTTCCCCCGCGTGCGCGGGGATAGTCC # Left flank : TTGATGCCGCAGCGTGCCCGCTGGACCGGGCTGACGTTGAACTGGTTGAGGTGGCGAGGGCGGTCATGCGGCAGCATTATCGCCCATTATGGCATACGGTGGCAGCTGCTTTGCGGGATGCCAATGGCCGTATATGGACCGGCCTTCATCTTGGCGCGACGGTGGGGCGTTTGCAGATTTGCGCAGAAGCGATTGCACTGGGCCGGGCCAAGCTGGAAGGGGCGGCTGACATCGAAACGGTGGTTGCCGTCCGTCATCCCAAACAGGATGAACCCGATCAGGATATTGCCGTTGTCTCCCCTTGCGGTGCATGCCGGGAGATGTTTGCGGATTTTGCCCCTTCCACCATGGTCATTGTTACGGGGGAGCAGGGGTTGATCAAGGTGCCGCTTGCTTTGCTTCTCCCCCTTCCTTACCGGCGCTGAAAAAGCCGGCTTGCATTTTTCTCAAAATGTGGAAAATAGGGATTGTTCTTTGAAATCAATAATATCAGCCCTAGA # Right flank : TTTTAATCGAGAGCATGTGGGCGCAGATGGCCACCATGAAGCGGCCGATGCGGACAGAACTGTAAAAGACTTACTGCAAGACGCTGCTGAACACCTGTTCCGGCATCCCTATACGAAAATCGAGTCTGTTCAGTCCGACTTGGGCATAGCGCGTCAGACGGTGGGTAAATATGCCAATCAGCTTTCGGAGAAAGGTCTACTTTCCAAGCACCGTTCAGAGCGTAGCAACTATTATATCAACGCACCTTTGGTCCGCCTCTTCCTGAGAAGTGTAGGGTGGTGCATGCTCCAGGATTGCCGAAGCACCTTTTAATCCTGTGTCTTTTATATTGCCGTAATTTTTACCTATCCATGAGATTAAACATCTCCGGACAGTTACGTTGATGGAGCTGCGTAATGCAGTGGAAAAACTGGCCGGGTAAAAGCTCGGTCACTCCGGATGGTCCTGAACATCCGGCAGCCTTTCATATGCTTGATGTTGCTGCGGTGGCGGAAAGGCT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTCCCCCGCGTGCGCGGGGATAGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 3 1835429-1832594 **** Predicted by CRISPRDetect 2.4 *** >NC_008343.2 Granulibacter bethesdensis CGDNIH1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1835428 28 100.0 33 ............................ TCGCTGGGCATCCGTGCGCTGCGGCGTGACATG 1835367 28 100.0 33 ............................ CCGTCGTTCCTAGGGCGTTATTTATTTGCGTCG 1835306 28 100.0 33 ............................ TTCGATTGGTTTCGCGCTGCCCCCACCGAATGC 1835245 28 100.0 33 ............................ CGCCAGCGGGCGTTGGACGATTGTGCCCCACGT 1835184 28 100.0 33 ............................ CCCTGTGATCGTAGTGAACCAACGACCGTTGGG 1835123 28 100.0 33 ............................ CGACACCCTCTACGTCCGTCAGGTATTTTTCCG 1835062 28 100.0 33 ............................ CGTTTCTAGCTGACGCGCACGATTTGTCTGCCG 1835001 28 100.0 33 ............................ CAGCGGCAAAGACATGGCGCAGTTTTGCGGGAA 1834940 28 100.0 33 ............................ GCTCCGTCACCTCCGCATTAGGGGCTTCATCCG 1834879 28 100.0 33 ............................ CGAGCTTTCTGACCTGCCGCGCACTTAGGAGTG 1834818 28 100.0 33 ............................ GTCATGATAGTTGATTTCCCGTTCCATATGCAG 1834757 28 100.0 33 ............................ TCCGGCCGGTCCGGCCGAGTATCGTGCGATCGG 1834696 28 100.0 33 ............................ CGACCTGTATTGCGACGTTGCGCTCCAATACAG 1834635 28 100.0 34 ............................ TTTGACCGACCGTTTCCGAGCGCCCAAGGCAGCG 1834573 28 100.0 33 ............................ TTGTGCCCCACGTCCCTTGGCTTTTTTTCTGCT 1834512 28 100.0 33 ............................ CTGCTGGCGTAACGGGCACTCAGACAGAAACGC 1834451 28 100.0 33 ............................ CGACGATAGCTCCGATACGTACGCACCGTTCCA 1834390 28 100.0 33 ............................ TGTGTGCGTCCAACACGGCGGAATTGGCCGAAC 1834329 28 100.0 33 ............................ TGATTGATGAATAAAATAGACGGGGGCCTAATC 1834268 28 100.0 33 ............................ CTGGCAAACCGGGCAGCCAAGGCAGTGGTGAGC 1834207 28 100.0 33 ............................ CGGGCCGAGCTGCCCTGGCGTTCGGACGACAGA 1834146 28 100.0 33 ............................ CGCGGTGGTGAACGCCAGCCTGAATCCACTCGT 1834085 28 100.0 33 ............................ CTGCGCGGTCACCATGGCGCGGCACAGATCGTA 1834024 28 100.0 33 ............................ GCGATCCGGGCTGCGGAGCCCAAGGAGAAGATG 1833963 28 100.0 33 ............................ CCGATATCGCCGGATGGGCCGGGTGCATCATCC 1833902 28 100.0 33 ............................ GTGGGCAGCTATGCTAGCATCCATGGTCAGCCC 1833841 28 100.0 33 ............................ TCGGCACGACCTGCTGATCGACCCCGCCATCCT 1833780 28 100.0 33 ............................ CCGTAGCGCGTGAGACTACCAGCGATACAGAGC 1833719 28 100.0 33 ............................ CCACCCACGCTTTTCGAGCAAAAATAGCCCGGG 1833658 28 100.0 33 ............................ CTTCGTCTTGCGCACTCCACTCCCACCCCGGGA 1833597 28 100.0 33 ............................ TCATCGATCCGACCCGCCTTGTCGTGATCTACG 1833536 28 100.0 33 ............................ CGGTCTCATGCAGACGGTGCCGGATGCGCCTGA 1833475 28 100.0 33 ............................ CAATGTCGTCCCGAATGCAAAAATGGTGGACGA 1833414 28 100.0 33 ............................ CCACGGGATCAAAAGAATAACTTTCGCCTAAAT 1833353 28 100.0 33 ............................ CTGTACTGGGAGCCGATCAGGGCCGATCAACTG 1833292 28 100.0 33 ............................ CATTGTTCGCAGAGATGAAGATGGTCGGCTACA 1833231 28 100.0 33 ............................ TCCCCGTGCCGTTCGCCATCGACTGCGCCAGCA 1833170 28 100.0 33 ............................ CGATATCTGAAAAGCGGGGCCGCTGATTTGCGG 1833109 28 100.0 33 ............................ CGACTGGTCGCCGGGAGAGGTTGGGCACGCATT 1833048 28 100.0 33 ............................ CTCGCGCGGTCGGCACCATCCGCGCGCGCTGGC 1832987 28 100.0 33 ............................ CGAATCTCTGATAGGTTTCGTCTGTCTCAAGAT 1832926 28 100.0 33 ............................ TGTATAGGACTGCGAGCCATCAATCAGGAATGA 1832865 28 100.0 33 ............................ TGCCCCCTCACTAGGGGTTGCCGCACTGTCGGC 1832804 28 100.0 33 ............................ TTGGTGTCATGCAGGACGGCGATATCGGTCCCA 1832743 28 100.0 33 ............................ CCTAAGGCGCGCCCGCGAGGAAGGGGAGGGGTG 1832682 28 100.0 33 ............................ TCCGTGCCGTTGAAATGCACCGCCGGAAAGCGG 1832621 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 47 28 100.0 33 GGTTCCTCCGCGTGCGCGGAGATAGACC # Left flank : ATTGCTGCGTCCGGCCTGATGTTTGAAGAAAAATCCCTTTTCGGTCCGGCTTTCAAGCCATCTGGGTGCTCTCGGTAATGAAAGTGGAAAGGTCTTTCCGCACAAAATCGATTTTGATGTCAGGAGGGTGGAGCAGATTATTTAATATATCCTTGCGCAGCCTGCGCTTCATGCAGTTCGTCCGGGCTTTGTTCCATCAATGATTGCCAAGCATGTTCTGGATGTTCCGCCAACGGGTGAGCGTATAGAGAGCCAATCTTCTCATGCCCCTTTTTAATCCTGCACCCGTTGCAGAAGACGATCAGACGCGTCTTTAATTCTGCATGAGGAAGTGGGAGAGGAGCAGGGTTGGTATAGCTCCTAACCTGATTCTGTTCTGATTGTGATGCTCCGAAGGACATTATCGATGCCGGTGGAGTACTGCTGCTTCAGAGAAGTTAATTTCTGAAACATTGTGTTCTTTGAGATTGTCAATAAGTATCAATGTGTTGTAGGCAAGA # Right flank : TCACTCATCATAATGGATCGCTACTCTCCCGCCGGGGGTGTGCAAACCGCCCCCCGGCCTGATACACCCGGGTGCATGGATGCACGCCCGCTCGATCAGGTAACGGATCAGTCGCCACCCCCACACGCTCCGCCAAAGCGGAGAGGTAAAGGGGCGCGGAAGATCAACGTGGAGTTGGAGCCGACCGCCCTCGCCATGATGGGGCGGCTGTGGCGGGAGCATATCGCGCATCACCGTGTTCGTATGCTGGTGGTGATCCTGCTGACGGCGCTGATGGCGGGCAGCACGGCGCTGTATCCGGTGGTGATCCAGCATGCGATCGACCTGTTCAATGCCCGTGACCGGCGGATTTTGTACCAGATTCCGGTGCTGGTGCTGATCGTCACCGCCATCAAGGGCGCGGCGATGTATGGGCAGACGGTCTCCATGCAGCAACTGGTGCTGATCGTCATCAGGGAGTTGCAGGAGCGTATGTTCAGCCACCTCGCCCATGCCGATCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTCCTCCGCGTGCGCGGAGATAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.00,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 4 1917588-1919262 **** Predicted by CRISPRDetect 2.4 *** >NC_008343.2 Granulibacter bethesdensis CGDNIH1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1917588 28 100.0 33 ............................ CTTTCCACCAGGCCGCCAGAGGGCGTTACCCCC 1917649 28 100.0 33 ............................ CATTGCTCCGGCATCCTGTTCCGCGGTAATTGC 1917710 28 100.0 33 ............................ TTGTCTGCTAATTTGGCGGATGAGTTTATTAAG 1917771 28 100.0 33 ............................ CTGCGCATATCTATTAAATCCTGCTGCTGATTA 1917832 28 100.0 33 ............................ CCCCGCCGGGTTTTCCGACAGCAGTCCACGGGA 1917893 28 100.0 33 ............................ CTGTGAACGTTTTTAGATTTTCTGCCTCGGCCA 1917954 28 100.0 33 ............................ CGAGACCGTGCCGCGACGACACGCCACAATGCC 1918015 28 100.0 33 ............................ CGCGGCTGGCCGTCTCTATCGCCTGGTGGTCAA 1918076 28 100.0 33 ............................ GAGTTTCATCGGCTTCAGCGGCCCGCATTTCGC 1918137 28 100.0 33 ............................ GTGGCTGCCACTTCGGCTGACCGCACATTGAGC 1918198 28 100.0 33 ............................ CCCCACACGTTCGCGCCCGCCACGCCGTAGACA 1918259 28 100.0 33 ............................ TCGCTGCGCTCATAGTGAGCGACAGCGCCTGTT 1918320 28 100.0 33 ............................ CGTCCGAACAGACGCTGCGTCAAACGCCAGTGT 1918381 28 100.0 33 ............................ CTGGATATCCTCGGCCGAGATCGCATGCTCTTC 1918442 28 100.0 33 ............................ ATTCCCGCTGTGGTGGACGCCGTTGTTTCTCTG 1918503 28 100.0 33 ............................ GATCGCCATTCAATGGCCGCCAGAAATAGGCCC 1918564 28 100.0 33 ............................ CCATGCAGAATGATGCACCTATGGAGGCCCTCG 1918625 28 100.0 33 ............................ TTACCGCCCCTGTTCCAGTACTGTTCTGTATCG 1918686 28 100.0 33 ............................ TTTATCAAAATCGGTGCGGAGCTTCGGAAGCGC 1918747 28 100.0 33 ............................ CCGGTTCCCCCGGATTTTTGCCATTTTTGCATG 1918808 28 100.0 33 ............................ GCCAGAGAAAAATCTCTGTCTTTAAAAAGAGCA 1918869 28 100.0 33 ............................ TGGTCTTCAGCTGGCTGGGGCAGTGCTACGATC 1918930 28 100.0 33 ............................ TTTTTCAATCGCGCCCGACCTGCCCCTGTAAAG 1918991 28 100.0 33 ............................ CTGCGTCTGCTCACTCTGCGCGTTCTGGCCCAA 1919052 28 100.0 33 ............................ CACCACGCGCGTTTTGCCGCCCTTGCCGAACAC 1919113 28 100.0 33 ............................ CGACCCGAATATAGTTCTCACTCAGTTACATCA 1919174 28 100.0 33 ............................ CTGATCGCTGGAAAGTCAGCGCCGCACCGTCGA 1919235 28 92.9 0 ..........................TT | ========== ====== ====== ====== ============================ ================================= ================== 28 28 99.7 33 GGTTCCTCCGCGTGCGCGGAGATAGACC # Left flank : GGGTCATGAAAATATCGAACGTCTCACCCGACGCCAGACTGGACGCGTTCTGGCAGAACGCTCCGTCATTCCAAAAATGATCGAGCGACTCAAACAACTTTTCGAAAAAGAAACGGAGGCCATCCCATTTCTCGAGGATGATGAATGATGCCAGCCACTCTGGTCATTACAAGAGATGTGGAAGCACGCTATCGCGGCTATCTGACCTCGATCATGCTGGAGCTTTCTGCTGGCGTTTATCTGTCTCCCCAACTATCCTCGGCGGTGCGTGAGCGCACCTGGGCGGTGCTGTCGGAATGGCATTCCGAACTGCGCCGTGGTGCTATCGTGCTGGCATGGCCCGATGCCAAATCCCCCGGAGGCATGGCAATCCGCACCCTTGGCGACGCTCCCAAGGAGATTGTCGATGCCGACGGGGTGCTGCTCGTTCGGAAAAGTTAATTTTAGAAACATATCGTTCTTTAATATTGTCAATAAGTATCAATGTGTTATAGGTAAGA # Right flank : TCTCGGCAATGTCTGCGAGATGGCGGAGAGGGTGGGATTCGAACCCACGGTACCCTTTAGGGGCACAACGGTTTTCGAGACCGTCACCTTCGGCCACTCGGTCACCTCTCCGTTCGGGGTCTCTTAGAGCAGGCGAAAGCCCGCGCCAAGAGGCTGTAGCAGAAAGATGCCCCCTTACCTTCCGGCCCGGTTCCATCCAGCCCGAGCCCGAATCGAAGCCACGGCAAGCGAGAAGCCCCTATACCCGCTGAGCAAACACCTCCTTCGGGCTGCCGGCACGGCAGATATTTCATGAAAATGGGAGCCATGCCGCAAGGAATGTTTGACTTGTGGCGTATGACCGGTATAACCCGCGCCTCTCGGCCGCCGTGCCTCCCGCTTGTCGGGGTGTTCGGAGGCCGCTCGGCGTTGACGGGATGGCTCCGTCGTCGCGGAGCCAGCATTTGGGACCAGAAGCGATGTTCGCAGTTATCCGCACTGGCGGAAAGCAATACCGTGTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTCCTCCGCGTGCGCGGAGATAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.60,-10.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA //