Array 1 742879-744906 **** Predicted by CRISPRDetect 2.4 *** >NC_009135.1 Methanococcus maripaludis C5, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 742879 37 100.0 35 ..................................... TTCTCCTTCCATCTTGAACAGTGTGAGGTAGCAGG 742951 37 100.0 37 ..................................... ATTAATCCCATAATACTTTTCTAGGTCTGGGCGGAAT 743025 37 100.0 34 ..................................... TAAAAAAAGAAAAAAGTTAAAAAAGCTAGAATAA 743096 37 100.0 37 ..................................... AAAAAACAGATTGAAAAATTAACGGCAAAACAATGAA 743170 37 100.0 36 ..................................... AAAACGAAAGAAGACTCAACAAGCTAGAAAAACAAT 743243 37 100.0 34 ..................................... CAATTGCTAAGAGTGCACTAATCGCACTAATAAA 743314 37 100.0 35 ..................................... ATTTTAAGTATGCGATGTACTCGGATTGATAAATT 743386 37 100.0 40 ..................................... ACGTAGATACGCTTGTTGCTTCAATGGAAAATTCAGAAGG 743463 37 100.0 36 ..................................... TTTGTGAATCCCATACAAGGGTTACAGCAGTTACAG 743536 37 100.0 37 ..................................... ATTTATACGACTAGAAGACCGGCAAAAGTGTATACGG 743610 37 100.0 34 ..................................... AAAATAAAGCAACGGTTATAAGTCCGGTTGCGAT 743681 37 100.0 37 ..................................... AGCGTCTATATAAGCGGAACTATACGCACTTTCCGGT 743755 37 100.0 37 ..................................... CGAATGAAACGAGCGAAACAAGTAATAAAAAATCAAG 743829 37 100.0 36 ..................................... CAGTAAAAACATTTTGATTTATTATTTTGATCCATT 743902 37 100.0 39 ..................................... CAGTAAAAAAAGTTAATGAAGAAATTACACCAAGTACTT 743978 37 100.0 38 ..................................... TCGATATAAGCGGAACTATACGCACTTTCCGCTCTTAA 744053 37 100.0 38 ..................................... TTTTTTTATACGTTTAGTAACAGGGTTAATTCTGTTTA 744128 37 100.0 37 ..................................... TTTAATTCCCATTCATGGTTTGGATCTGGAATAAATG 744202 37 100.0 38 ..................................... TTTTGTTCGTGTCTTTTCTTCTCAATAATTCTTTTAAA 744277 37 100.0 37 ..................................... TTTTTTTATTGTAATCGGTTATACTGTTGTATTCTGT 744351 37 100.0 38 ..................................... ACAATTTAGATGTTATAGAGTTTTTAAAACAGAATAAA 744426 37 100.0 36 ..................................... TACAGAATTTACGTGATTTTAATTATGGTATATATT 744499 37 100.0 38 ..................................... TATTGTCGATTTTATTTCGCTTAACTCTGTCGGATTAT 744574 37 100.0 36 ..................................... TGATGGAGTCAAAAGGTAAGACTGTTAAATTTCCGG 744647 37 100.0 37 ..................................... ACCTTGAAAATATAACATATGAGCAAAAAATTGAAAT 744721 37 100.0 38 ..................................... CCACCGGCGGAGGGCTCTAAAACGAGGGTACTCGAATA 744796 37 100.0 37 ..................................... CTGATGAAACGAGCGAAACAAACAATAAAAAATCAAG 744870 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 28 37 100.0 37 CTAAAAGAATAACTTGCAAAATAACAAGCATTGAAAC # Left flank : AGAAATAAATATGACTGAAAAAGATGTCAATAAATTAAGTGAATATTTAGACGAATTCAAGAAAATATTAACGGGATATTATCCAAAACCAACGTCATATAAACAAAGATGTATTGATTGTTGTTATAGAAATATTTGCGTAAAATAATTGTTTCTTGAAAATTATCCTGCGTTTTCCAAACGTATTTCATTTATTTAAAAAATCAAAATAAGATTTAAAACGATATATTTTAAAAATACCTGCAAATTTTAAATATTTTTAATCATGGGAAATAAAAATAACTGTAATGCATACCATATCATAAAATAATATATGAATTTTGGTTTAACCAATATTTTCATTTATATAACGTTTAAAATGTAAGCAGGGCATATGAATGATCCATTGAACTAATTTAAACGAGTATTTATTTTTTGTTGATAAAATGAATAAGAAAAGTAAATATAATGGCAGAATCATAAAACTACTTCGTTATTCTAGAGTTTCTATCGTATTATGT # Right flank : CCGGGGCAAAGAGCAAGTTTAATTTCTAAAACTCTTTTATCTTCTTCGATAGTTCATGTTTTAAAAAAGCAGGGCAGGGATAACGATTATAAAATATACAGACAGATTAACAAAGATGTTGAGCAAAAAATAAGAGAATTTACCAATCAATACTGCATAGCAATTATTAAACAGGGAATTCTACTTGAATTTTTTAATGATCTGCAAGTTTTATATAATCTGATGATATATTGTATATCATACTGATATAATCTATATCATGGTGATACATATGGTTCATGTTCAAGTTGATTTAAGCGATGATTCAAACAGGATTATTGAGATATTCAAGGCTCAACATTCAATCCCTAAAAAATCTATCGCAATAGATATGTTTATTTCACAATTTGCGAGTTATGGTAAAGAAGCTTTAGAATATAACCCCGCATTTGTAAAAGAAACAATAGAACATAGTAAAGGTAAGGATTTTATAGATATAACGGATAAAAAATCCAGAAGAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTAAAAGAATAACTTGCAAAATAACAAGCATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: F [matched CTAAAAGAATAACTTGCAAAATAACAAGCATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.80,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //