Array 1 336-1278 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAWUU010000097.1 Faecalicatena fissicatena strain MSK.14.46 NODE_98_length_4967_cov_203.747, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 336 33 100.0 33 ................................. GCATTTTTCGCTGTCCTGTTGCGTCCAGAATAT 402 33 100.0 33 ................................. AACGGAGGCGATAGTGTTTCGGCAATCTAAACA 468 33 100.0 35 ................................. CTGGCGGTCTTTCAACGCCTGCTGCCGTCTTTCAT 536 33 100.0 34 ................................. TAATTGTCTAAATCAAGTTGAAAAGCGGCTCTGC 603 33 100.0 4 ................................. TGGA Deletion [640] 640 33 81.8 34 .A.....ATG.C...A................. TATTAAAGTGAACCCTTCTTTAAATTCTTCTGAG TA,C,A [647,655,658] 711 33 100.0 34 ................................. CAGCCTGGAACGTATGTGATTGCCGAAGAAAAGA 778 33 100.0 36 ................................. AGAATGTGACGTATACATTCCAAAACAGCACATCCC 847 33 100.0 34 ................................. GACAGCGTTCAAGATCTTGGCTAACCGATAGACT 914 33 100.0 33 ................................. AAAAATCAGGTGCATAAATAATTTTACTGGTTT 980 33 100.0 33 ................................. CACTTGACGGCGAGCTGACCGACCAGGAAGGCA 1046 33 100.0 34 ................................. ATTTAATAGTTCAATCGGTGCATAAAACAGTTAT 1113 33 100.0 34 ................................. TGGAAACCAGGAGAAAAAACATTCAAAGTAAATA 1180 33 100.0 33 ................................. ATGAAATTTCTATTCTGAATACAGCAGAACCGA 1246 33 93.9 0 .........................A.T..... | ========== ====== ====== ====== ================================= ==================================== ================== 15 33 98.4 32 GTCACGTCCCGTAAGGGGCGTGTGAGTAGAAAT # Left flank : ATAGTAACTATGTGGCTTTCAGCCACTTTCACGGCTACGCCGTGAATAATCCAGGTTAATTAATCCAGAAGAGGATAGTTTGCGATTTTATTATCTTGGGAACAACTGGAATAAGAAAATTGAACATATAGGTGCTGAGAAAACATATGATCCAGAAGGCGTAATTATTATTTGAAGGTAGCGAAGGTGTGATGATTCAAAAACCACTTGAGGTTCGCCTGAAAAAACATTATAATAAATAAGTTATATATGCGATATCATATAAATGATATCAGCAGAAATAAGTCCGTCCCAATATGTGGAAATGTTCCGTTACATAAATACAAAATGTAGCGG # Right flank : TATCTGCTGGAGTAGTGTTTTAGAGACTATAAAGAAAAGTCTGTAAGTAAGATTCTTCTATGATAATGCAAGGCGAAAAGTTTATTTATTGAGCTTTTCGCTCTTGTTTTATATATAACAGCTATAAATTTGTATGTCAAGAGCAGGCGAAAAATCCGCCGGTCTTGCTATATTCTGAGTCGCCTATTCGGGCAGGCGTCCTTCATACATAATACTCAGTTCCCCATATACCTGTGCCCGGTTGCGAACCGTTGTTGTCCATTTTTTCGTTGCTTTAAAAGTAGCAAGGTATAATGCTTTTAGGAGTGCTGTATCACTCGAAAAAACGCTTCTCTGACGGTTCAGCTTACGATATGTGGAATTCAGGGATTCAATGGCATTTGTCGTATAGATCACCTTTCTGACCGTTGCTGAAAACTTGAAAATAGGTGAAATTGCATCCCGGTTATCCTTCCAGCGTTTCATGGAATTCGGATATTTTGGTGCCCATTTTTCTGTTA # Questionable array : NO Score: 3.00 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:-0.17, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACGTCCCGTAAGGGGCGTGTGAGTAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.70,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 1 15900-14639 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAWUU010000054.1 Faecalicatena fissicatena strain MSK.14.46 NODE_54_length_22986_cov_249.904, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================= ================== 15899 35 97.1 37 ..................................T CCCTGTGCCATATCTTCTGTGCTAATCATTCCAGCTT 15827 35 97.1 38 ..................................T CATTTAAAAATCCCTACCATTGGCAGGGTAGAAAGTAG 15754 35 97.1 39 ..................................T CAACTGCTCTGTAAATCTGGTACTCAATGCCACCTGCAA 15680 35 100.0 37 ................................... CTAACATCACGGCTTTCCAAACGTCAAGTTCGGAATT 15608 35 100.0 35 ................................... CACCGGTAAACACTTCGTATAGACGGTCAACGTTG 15538 35 100.0 39 ................................... CATAAAGCCTGTCCGTGTTAAGGTTATACCATGCACCGC 15464 35 100.0 35 ................................... TTCTTCTTCAGATCCGCCCATGTCTGGATGATTTT 15394 35 97.1 40 .............A..................... TTTGATGTCGATTAATTTTTGACATGAAAAAAGAGCTGGA 15319 35 100.0 38 ................................... TACACTTTAATGCCCTTTAATAAATCTCCGCCCTTGCG 15246 35 100.0 36 ................................... TCCTTTCTTATTAGGCGTTTTTGATTTTTTATTTGG 15175 35 100.0 34 ................................... CTAAGCGTCCCGTTCATTCATATCATTTCTTAAA 15106 35 100.0 37 ................................... CACAAACCGGACATCATATGGATTACGGTAACGGATT 15034 35 100.0 38 ................................... CAACATTGCTGATCGTTTTTATGGTGCTGAAACTGATC 14961 35 97.1 41 .............A..................... CTTGCTACCGCAAGGAATAAAAAATAATTTTTAGTTATCCT 14885 35 100.0 36 ................................... CCAAATATTTCTGTGATAATATGAAATCAAGGAATA 14814 35 100.0 37 ................................... CACCGGTAAACACCTCGTAGATCCGGTCAACGTTCAC 14742 35 97.1 34 ..............................A.... CTTGTAACCTTTTTCTCGTCTTTCTTCATCATGT 14673 35 82.9 0 .............A.A..T..GC..........T. | ========== ====== ====== ====== =================================== ========================================= ================== 18 35 98.1 37 ATTAAGAAATATAGCTCCCCGAGAGGGGACGGAAA # Left flank : TGAGCAAATTTACAGGTAATCATACAATTTCAGATCGTACCGTTTTTTTAGGCGGTGGCAGTGGATTTGTATCAAAAACTATGATATACTCATTATTTGAAGGCAGAGAAGCAGTTGCGGTTACAAAAGATATTTTTGAGAAAACAAAGGTCCCAAGAGAACACAAGCATGAAAAAGATTTGCTATACGGTGTCTCACCGCATATTCTCAAATGTACTCGTTATCAGGGAAAAGAATACATGATGGGACAGTGTGAGATGACGTTGCATCCAAAAGAATTATAGAGTGCAAAAGAATCATAGAGTGCAAAAGAATCATAGAATACAAAAGAATCAAAGAAGCAGAAATCCGGGAATTTTGCAGGCGTTTCCCACGCACCGCATAAACACTGGGAAAACCTGCAGAAATTCATTCCAAAGAAAGCTATATTTCCAGAAAAAACAATTTGCCACGCAAAACGGCAAAAACCCCCAGAAAACAAGCGGGGTCCAAGAGATGGT # Right flank : GGGATTTCTTCTATCTCCAACTATTGGCATTGTTTAATTAAATTCTCCGTCAGGGGACAATTTGCAAAGGGGGGTTTTTATGAGTTTGTTGTATGTAAATGAAAATGGTGCAACGATTGGTGTGGAAGCAAATAAGTGCGTGGTTCAATATCGAGATGGCATGAAAAAAATGATTCCGATTGAATCACTGGAAGGTATCACGATCATGGGACAGTCGCATCTGACAACAAAGTGTGCGGAGGAATGTATGTGCAGAGGAATCTCTGTCGCATATTTTTCAAAGGGCGGTAAGTATTTTGGGCGACTGATGTCCACGGATCATATCAATGTTCAAAGGCAGAGAAAACAAAGTGCTTTGTATGATACAGATTTTGCGATGAAACTGGGACAGAAGATTTTGAGTGCAAAGGTGAAAAATCAAAGCGTTGTTTTGCATCGCTATGAAAAAAGCCGTGAGCTTTTGCTGGATGAAGAACAGAAAATGATGCGGATATGCAAAG # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAAGAAATATAGCTCCCCGAGAGGGGACGGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //