Array 1 272382-273508 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJVGJ010000023.1 Escherichia coli isolate IN02, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 272382 29 100.0 32 ............................. ATTTTATGTGCCGCGTTGAGGCGTGGGCGTTA 272443 29 100.0 32 ............................. GAACTTGATCTGATTTGTGAATTTATTCGATC 272504 29 100.0 32 ............................. GAGATTGCGACGCTCCGTCAGCGCATCACAGT 272565 29 100.0 32 ............................. TGGGAACTGGCCCGCGCCATTGGTCAGGGGAA 272626 29 100.0 32 ............................. AACAAGCTCGCCCGGCCCGTCCTCATCAAGGG 272687 29 100.0 32 ............................. CCACTGCACTGACTCTCGTGCGTACGCTGCGG 272748 29 100.0 32 ............................. GCTGGCAACTGAATGCCCGCCGTATTGCCTTT 272809 29 100.0 32 ............................. CAAAGGCCCGCCAATGCGGGCCGATTTATCCC 272870 29 100.0 32 ............................. CCGGACGAGAAATTCACGTTCCTGCATTTCAT 272931 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 272992 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 273053 29 100.0 32 ............................. ACGAAACGCAGTACGGTTTTGTCAGTTAACAC 273114 29 100.0 32 ............................. AACTCTCACCGGAGCAGAAAAAAAGAAACCAG 273175 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 273236 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 273297 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 273358 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 273419 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 273480 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 299208-299968 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJVGJ010000023.1 Escherichia coli isolate IN02, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 299208 29 100.0 32 ............................. TAAGAGAACCCGCCATACGGCGGGTATTTTCA 299269 29 100.0 32 ............................. GACCTGCCGTATCGGGTTTTTAATTTCTATGT 299330 29 100.0 32 ............................. ACGGACAAAATATATATTGATTTGCGAATTAT 299391 29 100.0 32 ............................. GTAAAGAAACTGCCGACAAATCCCTGTTCGTT 299452 29 100.0 32 ............................. CCCGTCACCGACGCGCAGTGGCGCTACCGTGA 299513 29 100.0 32 ............................. CAATCACTGATTGAAAACGCGATTAATAGTGA 299574 29 100.0 32 ............................. ATTTGGCGGCACCAGATTTTGCGTCAGATGAC 299635 29 100.0 32 ............................. CCTACGAACAATTCCTCTGAACCGCCCGCACT 299696 29 100.0 32 ............................. GGATCTAACGCGCTGTAAAAATTCCGTGCTTT 299757 29 100.0 32 ............................. CATCTATTTATCTCGCCGCGATTGGCGATAAC 299818 29 100.0 32 ............................. CCGAACGGCTGGCGAAGCAGGTGGCTGGCGTA 299879 29 100.0 32 ............................. TTCAGGGTGTGATTCCGCATACCAAGCAGTAA 299940 29 96.6 0 .A........................... | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCCTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 68854-69723 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJVGJ010000014.1 Escherichia coli isolate IN02, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 68854 28 100.0 32 ............................ AATTGTGTCGCGTCTATTGCTCCGGAGATAAT 68914 28 100.0 32 ............................ ACATCATGAACGCGCAGCAATATGCCGCAATT 68974 28 100.0 32 ............................ CGGCAGAAAAACCGGTCGCGCTAATGGAGAAA 69034 28 100.0 32 ............................ GCCGCAACTCACAATAACAGAATCACAAATTA 69094 28 100.0 32 ............................ TGCCAGATATTTCAGATCATGAACGGTTGCGC 69154 28 100.0 32 ............................ AGGAAATTTCCGGCGACTAACGAAACAGGTTG 69214 28 100.0 32 ............................ GTCATCGGTATCGTCACGCGCAAGGGATTCAA 69274 28 100.0 32 ............................ GTTGTAATTTTCGTACCCGGCGCGATCGCAAT 69334 28 100.0 32 ............................ AATCGTAGGGCACACCCTTACGGCAGTTAAAA 69394 28 100.0 32 ............................ AATCAGCCCGATCACTGTGCTGCGCCCCGCTC 69454 28 100.0 32 ............................ TCATTGGAATACATGAGTTGCGCCCATTTTGT 69514 28 100.0 32 ............................ TGGCATGCAATCACTACAGCTATTAATTTCTA 69574 28 100.0 32 ............................ TTCACCGAGTGGGTGCTCGTGCTGAATGAACT 69634 28 92.9 32 ..................C.T....... CACATATACGCGAACGTCATTTTGCAGTAGCA 69694 28 85.7 0 ....................A...C.CT | T,C [69714,69718] ========== ====== ====== ====== ============================ ================================ ================== 15 28 98.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGCTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTTAGGTAGGTTGGTCAAGTCCGTAATCTCGAAAGAGGTTACGGACTTTTTGTTTATGGGGTGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGGTAAGTTGTTGATAATTAGTGCTGCGGGAAGGTAAGGATAAAAAAGGGTGCTGCAGGAGAATGGGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : TACGATAGTGTTAGGCATTTGGTCATGCCATGACACTCTCAACTTCAAACCATTAGCTTCAGCACACAATAACAATCGTAATAATTGCGACAGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTTCAGGTGAATGGTGGGCGGGTGGAGTATGTCACCAGCGAAGGTAAGGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCATTGATGTTGGGGATGGGAACATCCGTTACCCAGGCGGCGATGCGTGAATTTGCCCATGCCGGGGTGATGGTGGGCTTTTGTGGTACGGATGGTACGCCGCTGTATTCAGCGAATGAAGTGGATGTCGATGTCTCCTGGCTCAGCCCACAAAG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 75060-76348 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJVGJ010000014.1 Escherichia coli isolate IN02, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 75060 28 100.0 32 ............................ AACGAGCAAAAACGCGCGTACCGGATTGCGGA 75120 28 100.0 32 ............................ ACCAGAATTAATAATCTTTTCATCGTCACGCC 75180 28 100.0 32 ............................ GTATTGCCTGACTATTTCACGCAACAGATCGC 75240 28 100.0 32 ............................ TCTAATATTTCAAAACCCCAACGACTGCCAAT 75300 28 100.0 32 ............................ ACAGGCACCCGGCTGATGTTCGTAGGCGACAT 75360 28 100.0 32 ............................ CACATTATGAATCACACGATGGCGATGCGTGA 75420 28 100.0 32 ............................ ATCACATTTAATTCCGTGTTTCGTTTTGAACA 75480 28 100.0 32 ............................ GAACTCCCTTTCGTGGGCGGTACGTAATGATG 75540 28 100.0 32 ............................ GGGAACAACAGGACACAATCCGCAACGGTGAC 75600 28 96.4 32 .............T.............. TCAGCGACGAGCTGCGCCGGTGGGCACGTAAT 75660 28 100.0 32 ............................ GGGAACAACAGGACACAATCCGCAACGGTGAC 75720 28 100.0 32 ............................ TCAGCGACGAGCTGCGCCGGTGGGCACGTAAT 75780 28 100.0 33 ............................ GGTACTAAATGCGATGATCACCCCGAGCGTGAT 75841 28 100.0 32 ............................ CACCGGGCCTGCTCAGTCGCGCCGACGTCCTG 75901 28 100.0 32 ............................ AGTTGAGTAGCGTGGGACGCGATACGCCCAGC 75961 28 100.0 32 ............................ ATCCTGATAATTCAAGTCTGTGATTACCAGTA 76021 28 100.0 32 ............................ TACTTGTGCTGAAGCACTGGCATCCAGAATGC 76081 28 100.0 32 ............................ AGTACGCTATTACGCTACCCTACCCAAAACAC 76141 28 100.0 32 ............................ ATGTTTATTCCCTGATTAATGACGCCGTGTTA 76201 28 100.0 32 ............................ ACATCGTTTACTCCGTTCGCCGCGTTAATGCG 76261 28 100.0 32 ............................ ACATTGATCAGGTTATTTCAAATACGCCCGGC 76321 28 89.3 0 ....................T..TC... | ========== ====== ====== ====== ============================ ================================= ================== 22 28 99.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TTTTTATGTGCTCCGTGACTGACACACACAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTGAAACGGTCAAGAAGAATTTATATAGATTGATTTGTTTGGTTACGCAATGAACACGCTGTTCGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATGAAGAAATACCAAATCGACCCTTTTTTTAGGGCGAAATGTAACTCATTGATTTTATTTATTTCTATTTTGAAGTCTGGAAAAAGGGTTTGAATCTGCGATTTTGTAACTTTTAACAATAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : ACTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCACAGACGCAAAAAAGGTCGGCTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //