Array 1 600876-600444 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPOI01000001.1 Geobacillus vulcani PSS1 N685DRAFT_scf7180000000002_quiver.1_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 600875 30 100.0 40 .............................. TTGTCTTTAACGATGACCAATTCGTCGATACATACGAGAA 600805 30 100.0 38 .............................. TCGGCCCGCGAAGTGGCTGCATTGAAACGGAAGATTGC 600737 30 100.0 37 .............................. AAGATACGTCAATTGCAAGAGCAGCAAAAACGACTCA 600670 30 100.0 36 .............................. CGGTATTGATATTGCGGCAAAAGGCCGTGTGCCGAT 600604 30 100.0 35 .............................. CTTCGCCACCGGACCAAGCTGGAGAAATTCCGCCC 600539 30 96.7 36 ....................A......... CCCAATAGACCAACTTTAATCTGCTTGCCACCTAAT 600473 30 90.0 0 .....................A..G..G.. | ========== ====== ====== ====== ============================== ======================================== ================== 7 30 98.1 37 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : ACGATCGAAGTCCAGCCGGTCGACATGTTTCCCCATACGGCGCATGTGGAGTGCGTGGCGAAATTGCAATGGCGGATGTAAACGCCAAAGAACCAATCTTGATTGAACGTCATGTCCAAAAGAAGTGTCCCGTCTCAAGAAATGGGCAGTCCGACCGCCCGCTGAGCAGGCGAGCGAGGAAGGCCGTTAGCCATCATCAAAGAATTGGGGTAGTGGTGGTGAGAATGGATACCTTCGGAACAAAGGGAAGCAGAAAGAGCTGATGGCGCACGCGCCCCAATCGCTTGAAGCCCCTTCTCCAAGCGAAGCGCAAATGGCCGATCCGTTCACTTGTCGTCGACCTCCAATCGTGCAAAAACCCTAGGGGGTCGACGACATTGATTTTGGTCGCTTGATCCCTACAGCCATGACGGATGAACTTGATTGACAGAATCTTCGAAACGTGTTATTCTAAGGATGACGTTTAAGGGAAAAGCTTGATATGACAACACTTTTTGAGG # Right flank : AACTGTTACACCTACAGCTGTCCATAGCATACCCTTGTGTTGCTTCCACTGATCTCCCCATTCAACCGCTTATGTTTTTGGCCGTTTTGGTTGCTTTTCTCCTTCATTTAGCCAACTAGAAGGATGGAGTCGAGCGCATGTTCCTCTATTTCAGCCGTTTATAAGAAACTTGGCGCATCCGTAACGTTTTGCTCCTGTTTTCCGCGGTGATTCCTTTGTGATTGTACCCATCGATGTTCTATAGGAAAGGGGGAATGTGATTCAGAAAATATAGAAAAAAACTATTATAAAAAATTATTGAAATAGAAATATGTGATTATTTATAATATAGCTTAGCCGTGTGTTATACAACAAAAGCAACTGAATCAATGAGGAGGGATGAATTTGATTGACAAGCTTGTCCAGACGGTGAATGAGTTATTATGGAGCCCTCTCTTAATTCTTTTTATTGTTTTTTGTGGAGTGTATTTTAGTATTCGCACCCGGTTTTTGCAGATTCG # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 621627-621394 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPOI01000001.1 Geobacillus vulcani PSS1 N685DRAFT_scf7180000000002_quiver.1_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 621626 30 100.0 39 .............................. CCATATTTTGTAATCAAGAATACATCAATGTGTTTCATG 621557 30 100.0 36 .............................. GATGAATTGCTTCAATATTTGACAGACGGAAAAAAA 621491 30 100.0 38 .............................. TTTTGCGGAAAATTTTTCGTTTCAAATCGGGGTATTCG 621423 30 76.7 0 ...................C.A...TCTCA | ========== ====== ====== ====== ============================== ======================================= ================== 4 30 94.2 38 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : CAACCCATCGGTTCACTTGCCTCCCGAGCGGCTCGCCAAACTCGCCTCCGTAGCGTCAGCGCCGCTGCAGTCAGTGAAAGAAGCGATGGCGAAAACGGAAAAAGCGGGATACCAAGAGGCGATCATCGGCCGACTGCTTCGAGACATAAAAAGTTAGCACTCGCCCCCGTTCATGCAAGTGTTGGCATTCCAATGTTTGTATTCGTCTTGCCCGCGATGGATGAGCAGGCGGCGCCCGGGTCTTATTCACCGCATGACGAGCGTTTGTCCTCGCTTAGGCAAACAGCAATCGGCAAACAAGGCAAGTCAAACGCCAGGAAGCAGTCTTCATTTGTCGTCGACCTCCAATCGTGCAAAAACCCCAGGGGGTCGACGACATTGGTTTTTGTCACTTGGCTTCTACAGCTATCACGGGTGAGTATGATTGACAGAATTTTTTGACCGTGTTATTCTGAAGGTAACCTAGGATGAAAAAGTTTGATATAACAGCGCTTTTTGGG # Right flank : CTGTGAGCAGGATGCCGCCTTGAGGACGGCGAATAGAAAAAGAGAGACCGTCAAGGTGAGGTGATTGAATGGCGATTGACCATGATCGGCTGTTCAAAGAGCTGATCCGCACGTTTTTCGAAGAGTTTCTGCTCCTCTTTTTCCCCGACATGCACGAGCATATCGATTTCCACCATCTGTCCTTTTTATCCGAAGAGCTGTTTACCGATGTGACGGCCGGCGAAAAGTACCGCGTTGATTTGCTGGTCGAGACGAAGTTGAAAGGCGAAGACGGGCTGATCATCGTGCACGTGGAAACGCAAGGGTATGTCCAGCCGTCGTTTGCCGAGCGCATGTTCCTCTATTTCAGCCGCTTGTATGAAACCTACCGGACCCGCATCGTTCCGATCGCCGTCTTCCACTATGATTCCCTCCGCGAGGAACCGTCTGTGTTTTCGATGGAATTTCCGTTTGGCGAAGTGCTGCAGTTTCGCTTTTTTCCGGTGGCGCTGCGGAAGAAG # Questionable array : NO Score: 8.57 # Score Detail : 1:0, 2:3, 3:3, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 2454036-2455135 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPOI01000001.1 Geobacillus vulcani PSS1 N685DRAFT_scf7180000000002_quiver.1_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 2454036 30 100.0 37 .............................. AATCAAAGAATCCCATCGCATAGCGCTCTTTTCCGGC 2454103 30 100.0 36 .............................. TGCGGTTGGAGACACAGACGAAGTGAGACGATTGTT 2454169 30 100.0 35 .............................. CAAATATTTTGAAGTCGATGCCGAGCGGCTGGAGC 2454234 30 100.0 37 .............................. TGAACGTTTACGCGCGGCGCTTATAGGCGCTTTTTGT 2454301 30 100.0 35 .............................. TGGAGTACAAACAGCGCCGGATTCTACTGTTTATG 2454366 30 100.0 38 .............................. CAAACGCGGAAGAAGTGGATGGGAAAGAGGCAAACATT 2454434 30 100.0 36 .............................. CTTTTTACGTAAACCTACTACTTACTTGTATTACAT 2454500 30 100.0 40 .............................. AAATAAATCGAGGAGAAATCCCCCCCATTCCTCGTCTTAG 2454570 30 100.0 39 .............................. TCGATATCGATGAACAGACAGAAGGGGAGCTAATTTTTA 2454639 30 100.0 36 .............................. TTGAGCGGGAAGGAAATAAAGCTATCGTTTGGCGAG 2454705 30 100.0 36 .............................. TGTAGGCAGAGGTAGACAGTACGGAGGACAGATGGA 2454771 30 100.0 38 .............................. CTGACGTCCCCGACGATGGTCGTCGAGGCGCGGACTAT 2454839 30 100.0 38 .............................. ATCGAGCAAATGAATATAAAGCTATTGATGTAATTCGG 2454907 30 100.0 37 .............................. CCTTCCGGTGCTCCCGAATCCGCCTTCCCGCTCGTGA 2454974 30 96.7 35 ....................C......... AGCATCGATGAGACCAAATCCCGAACATTTTTGGC 2455039 30 100.0 38 .............................. AACGTTGTCAATTTGTTGCTGCATATTTGTGAACTGCA 2455107 29 83.3 0 ....................A.-C....CA | ========== ====== ====== ====== ============================== ======================================== ================== 17 30 98.8 37 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : TTCCGATGATATCGTCCGCGTCGCCCGTTCACCGATCCGCAAGCTCGGGCCGAACGACCGACTCATCGCTCCGGCTGTGCAATATTACACTTTATTCGACAGCGTCCCGTCCGGACTTGTCAAAGGCATCGCCGCGCTCTTGCGGTTTGATGAGGCTAGCGATGCCGAAGCTGCTGCTCTCCAGCAAACGATTGAACAACACGGGATCGAAGGCGCGCTTCGGCAATACGCGGGACTGGAGCATGACCATCCGCTCGTCGTGGCGGTGGGGAAAGAATATGCTCAAATGAAACAAATGGATTCGCGTTAAACTTGGAGATCTCTTATATTCTGTCGTCGACCTCCAATCGTGCAAAAACCCCCGGGGGTCGACGACAACCGTTGAAAGCGCCCCCACCTTCCAGCTATCGAAGGAAAAAGAAATTGACACAATTTTTGAAACATGCTATTCTGAAAGCAGCTGCCAACGGAAACACCTGATTTCACGGGCTTTGTTTGGG # Right flank : AAGAGAAGGCCGTCTATATGGCGGTCTTCTTTTTTATTTTGAAAGATGGAAGCCATTGTCCCCCCCACGATGAAAGAAATGAAGTTGGGTGAAGGATGCTTACAGTGGGGCAATCTTGTGAACAAAATGCACAAAATTCATTTTATTTTCAAAAACTTCACGCCGATCTGGCGGCGTGGTAACGTTATGAATGAAAACGTTATCAAAAAATAAGGGGGCAAGGGAGAATGAAGAAAAAAAGATGGTGGGGGTTGCTTGCCGCTGGGATGATGACAGTGGCTTTGGCGGCCTGTGGGGGCAATGAATCGGCAGGATCGAAATCATCCGGTTCGAACGCTGGCTCATCGACCTCAGACTATCCGACGAAGCCGATCACTATTGTCGCTCCGTCCGGGGCGGGCGGTGGTTGGGATTTAACGGCCCGCGCGATTACGAAAGTGCTCGATGAGACGGGGCTTGTCAAACAAACCATGACGGTTGAAAACAAACCGGGCGGCGGC # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //