Array 1 3100164-3101631 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033709.1 Yersinia pseudotuberculosis strain FDAARGOS_583 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3100164 28 100.0 32 ............................ GCATGATGTTGACCATGTCAATGGATGTAGAA 3100224 28 96.4 32 C........................... TGAAACAATAGCAAACAATAATTCAGGTATTC 3100284 28 100.0 32 ............................ TGCTGCATAAGCACTAAAAGTATTGTTTACTA 3100344 28 100.0 32 ............................ AATATCATTCGATGAACTAGCAGATAGAGTTC 3100404 28 100.0 32 ............................ CAGCTAACTCTATTGAGCGATGGAGTGCCGCA 3100464 28 100.0 32 ............................ TCTGCCGCACATCCTCGATTTCTTCCTTCACT 3100524 28 100.0 32 ............................ CATTGGTGACAACATTTCAGTTCGCATTTAGA 3100584 28 100.0 32 ............................ ATACTGAAATATATCCCGGTGTGGGAAGAGCA 3100644 28 100.0 32 ............................ GCTCGCTACCCGTCAGGAGTCACAGGTCAATG 3100704 28 100.0 32 ............................ CCTTGGCGAAATCCCATGCCTCATGCATCCTA 3100764 28 100.0 32 ............................ GACATTGATAAATGCATATCTGAGCTTGAGAG 3100824 28 100.0 32 ............................ TCAAACTCTTCCCGCGATTTAGTTATGTCCAT 3100884 28 100.0 32 ............................ TTGCACCGTTTCTAGATTTAATGCTTTTAATG 3100944 28 100.0 32 ............................ ACGCTAATCTCTTGCATAGTATCACCGAAGGG 3101004 28 100.0 32 ............................ AGCTTCTTCGTGACTCATCCCGCCGCCGACAT 3101064 28 100.0 32 ............................ TAACTCTTGGCGGTCTTCACGGATAGCAAAAT 3101124 28 100.0 32 ............................ AATAAGTATGCATAGCCTCAACCGCCAGTTCC 3101184 28 100.0 32 ............................ AGCCCGGACGCGATAGCGATCAATTCCAGCTC 3101244 28 100.0 32 ............................ TCCTCGCGACAGCGAGGAGGAGGAGGGAGAGC 3101304 28 100.0 32 ............................ ATGAAGCGCCAGCGCCACCCATTAATAACGGT 3101364 28 96.4 32 A........................... GCCTCGCTGATGGAGGAAAAGGTCGAAAAAAC 3101424 28 100.0 32 ............................ AGACACGCTAATGACTTCTATTACTTTATTTT 3101484 28 100.0 32 ............................ CAGCAAGGAACATCGTCAGAAAAAACACTCTA 3101544 28 100.0 32 ............................ GTTACGTGGCAAGTATCCGACCCGACGCTGGG 3101604 27 85.7 0 ...................-A.A.C... | T [3101628] ========== ====== ====== ====== ============================ ================================ ================== 25 28 99.1 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATTGCTGCCCACGGCGCTGGAGGGCGGCCAGAACTACACGGTGTAGCACCAGATGGATCATCACAGAAATCAATAATATTAGCCCAATCACCATCGTCAATGACATCACATTGGAGAACTCCATCCCCAATCTTTCCAGCCACTGGCTTATTCTTTGTTGCATCACTGCTCCTATAAAGCATCAATCTGACTAAAAGGCCTTAGCCTAAAGGCTATAGGCGCAGGGGGTGCACCTGTTTACCCTTTTTTACATTGTGGTTCTGTATCTTTGTTCGATTGTTGCCCCGCGAGGGGGGAGACATCTTTATAGGCTGTGGTTTATGACATGGTTTGTGGAATTGTACTGTGGTTTTATTATGAGTTATGTTCTGACCCTATTTTTTTAGCTACTGCTAACTCATTGATTTTACATTGTGGTTATCGGTGGTCTAAAAAAAGGGTTTTTTCCCCATTAGCGAAATAAGTATTTTACAAACAGGATGTTATCGTATTATCTTACT # Right flank : ATTCTGGACCATGCGTTGATGCTATTTGGGGAGCAAAATTGCGAGCGGAAGCGCATTTTGTAACTGACAACAGGGAGAATGGCATCTTTTATTACTGACTTTATGAGTATTAGAGTAGGGTAAATAGCAGGTAGCATATCAAGATATACCCGTCATACTTCAAACTGCATGTATGTTGGCTGCGCTCAATTATCCCGGTCACTTACTGGTGTAAGTGCTTGGGGATTTACTCAGTTGCTGGCTTCCTGCAACTCGAATTACTTTGGGTATAGAGAGAGTTATTTTTTGGAAGAATATCTGCTAATAAAGCGCTAACGGAAAAATAGCGCGGTGGATATCCCGCTAAGGAGTTTTTTGGCTATGGAAAACGCTATTCATTCCTCTGATTTGAAAACGATCCTGCATTCAAAACGATCCAATATTTACTATTTAGAATATTGCCGCGTATTGGTTAATGGTGGGCGAGTTGAATATGTCACCGATGAAGGTAAACAATCCCT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 4047506-4046338 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033709.1 Yersinia pseudotuberculosis strain FDAARGOS_583 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4047505 28 100.0 32 ............................ AACACGTTGGATGAATCACAACAGTTAATTAT 4047445 28 100.0 32 ............................ ACATTGGGATAAAATAACATTTCTCGCTAACA 4047385 28 100.0 32 ............................ TGCGACTAAGCAAGTTATTGAAAGCTATATGG 4047325 28 100.0 32 ............................ GGGATATATTTCAGTATGGCCTTTCCGCCTTT 4047265 28 100.0 32 ............................ CTTCAAAGGACATACCAGACTTGTGGCAAGAT 4047205 28 100.0 32 ............................ TCGTAAATCATTAATTAACATTCGATCTATAT 4047145 28 100.0 32 ............................ CTACTCCGAAACTACAGAGTGTGATTACATTT 4047085 28 100.0 32 ............................ TTCTAGCGAAACATCTTTTATGATTGCGACTT 4047025 28 100.0 32 ............................ GTGATGGGTAAAGTTACGGCATCAGGTGAGTA 4046965 28 100.0 32 ............................ AATCTGACCAGACATAGATGTATGTGCCCAAC 4046905 28 100.0 32 ............................ ATTGCGCGAAGTTGACCTACTGTGACGCCAAG 4046845 28 100.0 32 ............................ GTATAATTATTAGCATTATTTAATGTTGTTTG 4046785 28 100.0 32 ............................ ACGAGCGCCGCAGCTACAGCGTTGAAGAGTTA 4046725 28 100.0 32 ............................ TACGCAGCAGCAAGACCATTAGCAGCGGTTCT 4046665 28 100.0 32 ............................ TATGACTTTTCATCGCAGCGATACACTCAGTT 4046605 28 100.0 32 ............................ GATCTCGCCGTCCAATAGCTCGATAATTGAAC 4046545 28 100.0 32 ............................ ATGTTTGCTGACGTGCCGATTGAATAGTCACC 4046485 28 100.0 32 ............................ AACTTGAAACCTTCCCAGCAGTGACACTGGAT 4046425 28 96.4 32 A........................... TTACACGCTGGACGGCCAGGGAGACGAGAGCT 4046365 27 89.3 0 .....................CC.-... | T [4046340] ========== ====== ====== ====== ============================ ================================ ================== 20 28 99.3 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GTTATAAGGCAAGCTCACGCTCATCATTAAGTTTATCAATCCGGCACAGTCTCTGTTGCCGGATTTTTTGTATTCAGAAAACCAGGCCAGAGCGTATTGTCGTGCGGCTACAATCTCAATCGTGATTAGGCTAGAAAAATGAATCGAGGTGATGAACTCCAGCAGGCAGACCCTCAACTCGTCGTGGGAAAATACCGGATAGCGGATAATGCCGCCCCTAATTCGCAATAAACGATACCGAGTAACCGTACCCATTAGCCATAGTATTACTTTTTTAGTTATTTAATTTGGCAGGCCAGAAACATGGGCCACGCCACCCCCCCTCCTCAGAAGAGTAATCATTAGGGTTACGTCCCCCCCGATTCTTGTGACCCTCTTTTTTTCACTATGACTAACGTATTGATTTTTATGCTACTCAGGTATTTCACTAAAAAAAGGGTTTTTACGCATTTTGCGCCATTGCTCATTGATAAACATCGGGTTATCCGTATTATCTTACT # Right flank : TCTCAGCTCTCTGGCGGCGTTTTATCTGCAAATATTAACTCACTAATCCCTTGGCATATTCAAACAACGCTTTTAGCAGCGCAAGTTTCTCTTTATCGTCTTCATACTGGTTATAAAATTGTTCCAGTTGCAAAACATAATCTTGTACCCGCTCAGGGCTAAGCGCTTCACGGCGATGCTGTAACCAACGCTGTTGTTCACTGTTATTCAAGGTATTTGGGTAGTTACGGGCGCGGAAGCGGAATAGCAGGGCCTCCAACCGTGGGTCCTGAAATGTCAAATCCAGTGCTGGCAGATTTTGTGGCTCAGTTTGCTGGATAATCTTCATGGTGGCGCGGTCAGCATCACTGAAAAAGCCGTTATACAACTGTGTATCCACATCATCGGTAACCGCGAATGGCTCAGCTTGTGCAAACAGCGCGACCACTTTTTCACGCACCTGCGGGTTTTGCCGCAACAGTTGCAGATTTTGCAAACAACGCTGGCGATCAATCCCCAAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //