Array 1 41863-42362 **** Predicted by CRISPRDetect 2.4 *** >NZ_QIBV01000006.1 Gordonibacter urolithinfaciens strain JCM 16058 JCM16058T_contig_006, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 41863 32 100.0 36 ................................ CAAGTATGTCCCCTGGCTGACAATGTAACACGCAAC 41931 32 100.0 33 ................................ CTGCTCGAATACCTATTGGCCCACATCCCCGTC 41996 32 100.0 37 ................................ CTGGAAGCCGGACACCTCGCCACGGCGGAACCCCGTG 42065 32 100.0 35 ................................ TCGCAGCAGGGCGGGGGAGTGAGGTGCATGCGCTC 42132 32 100.0 33 ................................ CAACGACTACCACGGCCCGTACGTAACCGACAC 42197 32 100.0 36 ................................ TGCGAGCCGCCCAAGGCCCCGGGGCAGCTGGTCGCC 42265 32 100.0 34 ................................ CGCTGAAGGTCGCCTCGGGAAGCGGTTCGTCGTT 42331 32 90.6 0 ...........C.........C........T. | ========== ====== ====== ====== ================================ ===================================== ================== 8 32 98.8 35 GTCGCGCCCCATAGGGGCGCGTGGGTTGAAAC # Left flank : GGTCCCTGCATCGGCTCGGTCGGGCTCATCCCTGACCCGCAGCGGCGCAACGTCGATGCCCTCATGTTGGGGTACTCCCTGGCGAAGCCCGCCTGGGGCCGGGGCTACATGACGGAGGCGTCGCGCGAGGTTATCCGCTACGGTTTCGAGGAGCTGGCCCTCGGCCTGATCTCCTGCACGCATTACCTGTTCAACGATCGCTCTCGACGCGTTATCGAGAAGTGCGGCTTCGAACGCGAGGGCATCATCCACGCCGCCGAGCCCGCCCCCGACGGCACCATGCAGGACCTGGAGACGTACTATCTGACGCGCGTGTCATGGGAGGAGGCCTCGCGCGAGAGCGCGCCGCTCTGCGCGAACCCGAAGCTCTGGCAGTCCACTCAAGAGGTTCGCGCAGAATGACACGTCCAGAGGGGTAGCTTGCTGGTTGCGCAAGGTGCTACGCATCTTGAAAAATGAATACTACAAGTGAAAAATGCACTATCCTGCATAAACTGCCA # Right flank : CATTCGAATCGTGCTCGCTAAATGGACGGCTAAACAACCCGAGAGGCATCCTCGTGCGAACTGGGTTGACGCCTCGCTCGCCGGTTCTTGGGCCGCATTGTCCCAGCTTGCCGCACTACCCGGCAGGCTCGCCTGTCTTGCCCGGCTTCCCCGGCTCGTCCGATCCCGCTGTTGCGTGCGTCTCGTTCGCCCCATACTTCTTTATCGTGCTCGCCATCATGTCAGAAGGGCGATACAGGAACGTGAAGCACTTCGGGCAGCTCACGGCGTTGTCGGGCACCGGCTCGCCGCATTCGGGGCAGCGGCCGTCGTCGATGCGCTCGCCGCTTCCGTCGGCCATGCATGCGCCGCACATCACGCAGGGGATGCACATGGGAAGCCTCCTTCCGCTTGCGGTTTCGCTATCTCCCCCGGCATGCCACCGATCTCGCTCGCGGCCTTCTCGACCTCCTGCCGTATGAGCGCGGCCAGGGAGTCATGCACCACGTTCTCGAAGGGGA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCATAGGGGCGCGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCGTGCGGGCGCGTGGGTTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.30,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 47002-47440 **** Predicted by CRISPRDetect 2.4 *** >NZ_QIBV01000006.1 Gordonibacter urolithinfaciens strain JCM 16058 JCM16058T_contig_006, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 47002 33 100.0 33 ................................. CTGCGCCTTTGGCGTCTTCGAGGGCCCTTCCGA 47068 33 100.0 35 ................................. GGTCAGGGCGCGAGCGTCATCCGCCGCAGCGGCCT 47136 33 100.0 36 ................................. ACCGCGCCCGCGACAGGCGAGAGCTTGGAAGACACC 47205 33 100.0 33 ................................. TCGAGCACGCCCAAACGAGCGATTGAAGCCATA 47271 33 100.0 35 ................................. AAGGTCTCAAAAAGGCTCACACGAGCTCTTCTAAC 47339 33 100.0 37 ................................. TGCCCTTAGTCCAGCAGCTCGGGTCGCTCATGCAGGG 47409 32 84.8 0 ..........-ATA..................T | ========== ====== ====== ====== ================================= ===================================== ================== 7 33 97.8 35 GTCGCGCCCCTCGCGGGGCGCGTGGGTTGAAAC # Left flank : GATTGGCGGCCGTGCCCGGCCGTCGCAGCCCGATCCCGCTCCTTTCCGCAAACGAGGCCCGCCTTCATGTTGACCGCCCGCCTGCCGCCGCCTGCGAGCGCAAACCTTCGGAAACGCCGTGGAAGTGCAACTAGGAAGTGATGTTGAGTGCAGTATGGCCGGCGCGGCGCGGTGGCGCCATGTCCAAAAGGGCGCAGGGGGATAGGATTGGGAATTCCGTGCTGATAGGGTAAGCGGTGGGCAGGAGAGGCTTCCTTTTGGGTGATGCGAACTCGTACATTCTTGCTTGTTCTATAATGAGCTTGAGTGAATTCGAGGTTGACGATGAGTCTGGGTGCCCTCGATCCGCTAGTGCGCGAACCCTAAGCTATGGGGATTCACACGTGAGGTTCGCGCATGAATCGAGTCATTTCGGGTCGATGGTTGCTAGGAGGGTTCTGAGGCAGCTTGAAAATTGCATATTTCATTCAATTTTATTCAGAATTATGCATGAATTGACA # Right flank : TGCCGCCGCGCTAGCTTCCGATAAAACGAGTGATAGGCCTCGGCCTCTGCGAAGCTACCTGATTTGTCACTGCTGCAGTTGCGAAAGGGGTGTGAATTGGGTGCGCACCGTCGCCGTATCGTGCTCTTAGCACCGGTTTCGACAGACATTTGCGCCCCCATGCTACAATGCGCTCATGATGCGCGAGAGCGACATATACGAGCTGCGGCTGTTCGATCGGATCCTGATCGTCTTTCGCATGTCGCGCGGCGAGTACGGCGATCTTTCAGTTGAGGTTGTCTCGGCAGACTCGTCGGCAAGCCGCCTTCTCCCGCTGTCGTTCGATGGAGAGACTACCGACGAGCGTCTCTTCGAATGGATTCGCCGACGGCGCATCCCGAAGAATCGCGCCTATGTTGACGAGATACTCAAGTCGTGCGGCATCGAGTCCGACGATGCGAAATCGATCATCGATGTGAGTAAGGGCCTTTCGCTCAACGATTCCTATTGGGTTGTTCCTC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCTCGCGGGGCGCGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCACGCGGGCGCGTGGGTTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.50,-11.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 56904-57595 **** Predicted by CRISPRDetect 2.4 *** >NZ_QIBV01000006.1 Gordonibacter urolithinfaciens strain JCM 16058 JCM16058T_contig_006, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 56904 31 100.0 34 ............................... CCATTAATAGATTACTACGGATAATGGACATGGT 56969 31 100.0 34 ............................... GAGTGCTTTGCGCAAGGCGAAGAGCGAGATGAGC 57034 31 100.0 35 ............................... CGCCCCTGCGACGATGCCGAACTCTTGCAGCCTCG 57100 31 100.0 36 ............................... CGTCTGGCCGGCTCGAAAAAGACCTGGGCGCTGCCC 57167 31 100.0 35 ............................... GGCCTCTCCGACGTGGCCATCGCTCCGCTCACCGG 57233 31 100.0 33 ............................... AAGGATCGGCCCAGAAAATAGCGGAGTGCATCA 57297 31 100.0 37 ............................... CAGGGTGATGAGCTGCGTGACGCCCTGGTTCAGGCTC 57365 31 100.0 36 ............................... TGGAAACAATCTAATCAAGGTTGGGAGGAGAAAATG 57432 31 100.0 36 ............................... GTCGATTCGGACGGTGAGGCCGTTGAGGGCACCATG 57499 30 77.4 35 ......T....-A....G.AT..A....... GAGACATCTTATATTTGCGTGGAGCTGGACGAGAA 57564 31 77.4 0 ....C.....TATT........C...A.... | C [57570] ========== ====== ====== ====== =============================== ===================================== ================== 11 31 95.9 35 GTCGAGCCCTCGCGGGCTCGCGGGTTGAAAC # Left flank : GTTCATTTGGAGGTAGCGATGTACGTGCTGGTGACATACGATGTGGAAACGGCGAGCCCGCAGGGAACCTGCCGGTTGCGTCGGGTTGCGAAGATCTGCGTGAAGTACGGCCAGCGCGTGCAGAACTCGGTGTTCGAGTGCTCGCTCGATCCGGCGCAGTTCGAGACAATGAAGAGCGAGCTGATGAAGGCGGCCGACCTGACGCGTGACAGCCTACGGTTCTACAATCTCGGGAAGAACTGGAAGCGGAAAGTCGAGCATGTGGGGGCGAAGGAGGCTTACGACCCGGAAGGGTTCCTGTGCGTGTGAGAGGAAATGCGCACCTTGACAATGTAGAAGCTCTATTGCGTGCTGCGCGAACCCCAAGCGATGGCGCGCCATTCGGGAGGTTCGCGCAGGTTTTAGGCTTCACAAGCCCGCTGATAGCTGTTCATGGGGCAGACTGATTGTCTAATATGAATATAATAATCAGAATATGCGTATATATGCATATTCTGACA # Right flank : CGAGCACTCCCGCAGCGATTTCTTGCAGAGCTGGTTGATCATGGCGGGCTCCTAAGTGAAAACGGCGCCGCATGCGTCGATGGACTGGACGGGTTATTTCCCTCCTAAAACGATGCGGCTGTCGAGGCGCGCCCGCCCGACTCCGCGCACATGCTATGCCGCACCCCTCGACGGGCGGTAGCGGTGAGCGGCGAGCCGGCTGGTGCGGTCCCGGCTACCTGCAAGGAGGCTCGACGAAGGTTGGAGCTTGCGGCGATCTCCAAGCAGTTGGTCTATAATTCTCGTTCGTAGAAAAACGGGAGAAGGGGATCCATGGCGTCGGAGAAGCAGCAGGCAGGGCGCGCCTTAAGGCGGTTGGCGCGGAAGAACCCGCTTGCCGCCCTCGCCATTGCGGCCGTGCTCGTGATCGGTGCCGCGCTTGGATGGTTCGGCGCTGCGGGCGGCGGGGTCGCGGAGGATGCCGCGCCGGGCCGAGACGGCCAAGCAACTATCGCCCCCGT # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGCCCTCGCGGGCTCGCGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.70,-8.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA //