Array 1 48401-49210 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAZG01000024.1 Hafnia alvei strain ATCC 29926 contig_24, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 48401 28 100.0 32 ............................ AGAGGCTCCAATAGCTAACACCAGTTCACCAT 48461 28 100.0 32 ............................ CACGGCATTGTTGGCGACCGTTATACTGTCAC 48521 28 100.0 32 ............................ CGCGCGATTGTTCAAGACTATTTCGCCGGGCT 48581 28 100.0 32 ............................ GACTTATCGCCGTTTATTCCCGATTTCATTTT 48641 28 100.0 33 ............................ CCCGAAAAAACCACATCAAAAGTCACGATCCGC 48702 28 100.0 32 ............................ GCTCTATTGAATACGTACCCGAGTACGCTAAA 48762 28 100.0 32 ............................ AGCACAACCTGTAAGCGAGCCTTACAAGTTGA 48822 28 100.0 32 ............................ CATATGTCGCGCGAATTTGGCTTTATTTCCTT 48882 28 100.0 32 ............................ ACGCTGTTGCTGTTGCGTCATAAACTGGCGCA 48942 28 100.0 32 ............................ CGAATAAATCTAATAATTCCTTCTCTCTGTCA 49002 28 100.0 32 ............................ CATATCTATTGCGTGCTCACATGACTCCTTGC 49062 28 100.0 32 ............................ AGTCCCCGTAATTACAGGAGCAGGAAACCAAA 49122 28 100.0 32 ............................ ATCAGGTAACACCGGTTCCATGCTATTACCCC 49182 28 92.9 0 .....................A..A... | T [49202] ========== ====== ====== ====== ============================ ================================= ================== 14 28 99.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TTGGTGCCGTAGTGGGAACGCTACTGGCGCTTGCTTCTGCACGAAGCGAATGGCCGATGGTAAGCTCCATGTTCCTGTGTATCTTTGCTGCCATGATGCTGTTCCTGTATGCCTCTAGACCTACTAAGGCCAGCAACCGTATCGATCCCGCCTAAGCGCTTTGGCTCCCCGCTGATAAAAATAGGCGGGGAGGCCATTAGCAATCGCCGCTCTTTATTTGGCATATGCAACAGACATATGTTTGCCTGTTCGCAGAGCGCTAGCAATGCAGGGCTCAGATGAGCTGAAAGCGTTAATCTGCCCCCCAACTTTCCTGTGGGATCCGAACGCCACTCTCTAGCGATTCCCCTAAATACGATAAGCTTCCACTAACCCTTTTTTTCGCCTATTTATAACCCTTTGATTTTATGTAATAGTTTATCACGAAGATAAAAAAGGGTAATGCAGTGAAAAATGAGTTACAGATCTGATTATTCGAAGCTTTATACGAATATTCTACA # Right flank : ACAAAACGGCATTTCTGCATACTTTTCTATTAATACCCATCATCGTAAACGGCTCCCATCAAATAAAAGCAAACGCTTTCCTAAATTATAAATTCCTATGAAAACATAATCATGCTAACTATATTTTTCGTGCGATTTTGTGATGGGTTTTTCATTTCGTTAACAGTATTTTTTACCAAAACAGATAGAAACCCTTAAAAACAAAGAAAACATTAAAACTATTAATTATTAACCTATTAATTAATATTGTTTTAAAACAAATGATTAGCTAATTTCTTTGATCGAGATTCAGGGAGTTATTGTATTTCTTATGTAAATTGAAAAATACGACAAAGTAATTAAAATGAAACAAAAATGGTTGTGGTAATAAAGAGAAAAGTATACATATAACCGCAGCAGCAGAAGTTCCTCCCATCGTGGTATTTCTGAAGAAAAAATGGGGTAGTGCCAGATTGATCGTTGTTTCGGTCGTTTTTACTTCGGTGTTACCGAAATGTAAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 220821-220193 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAZG01000011.1 Hafnia alvei strain ATCC 29926 contig_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 220820 28 100.0 32 ............................ TCATCAATAAGCCAGCGCCTTCCCTGCTTTAT 220760 28 100.0 32 ............................ AGTAGAAATTGACCCAATGGGTAATATTTTAG 220700 28 100.0 32 ............................ CGCAAACTAGCCCTACAGATAAAAATCACGGC 220640 28 100.0 32 ............................ TTTGTGCGGGTTAAAGCAGCACCATGCGGGGA 220580 28 100.0 32 ............................ AGCCGGACCCACAACGCACTGGGAGAATGAAA 220520 28 100.0 32 ............................ ACAAACACGATTCTAAAGCGTTTTTATAAAAC 220460 28 100.0 32 ............................ ACTGATGCTTCTTGTGTCATATCATTCTGATT 220400 28 100.0 32 ............................ TGTGAGGCTAGCGTATAGACAGCGTTCAAGAT 220340 28 100.0 32 ............................ AGGCACATGGAGAATACAAACAGCCAGTCTAG 220280 28 100.0 32 ............................ TTTAAACAACGGCTCTATCCCGGATGGACGAA 220220 28 67.9 0 .C.......T.......T..A.A.TTCC | ========== ====== ====== ====== ============================ ================================ ================== 11 28 97.1 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGATTCGATTGGGATACGCTTGGTCCGGTGTTAGGCAAGGTGTATGAGGAGATCGATGAAGTGATGTATGAGGCGCAGCAGGCCGTGGTGGATGAGGAAAAGCTAGGCGAAGAAATTGGCGATCTGCTGTTTGCAACGGTGAATTTATCGCGTCACTTAGGCCATAAAGCCGAAAACGCCCTACAAGCAGCCAACCGTAAATTTAAACGCCGTTTCCGTGCAGTAGAAGATGCGGTGCGCGCCTCCGGAAAAACCATGGAAGAAGCCACGCTTGATGAAATGGAAGCGCATTGGCAGCAGGTGAAAAAGGCTGAAGGTAAATAGTCAAAATCGCGTTGGTTAAAGTGAAAAGGGCTGACGTGCTGCGTTAGCCTTTTTTTTCTGCCTACTAGTAACTGATTGATTTTAAACAGGCTGAGAATAACGCGCAGAAAAAGGGTATTTTGAATTTATTGCGCGAAATCGCTTTATTTTCACTCAGCTAGTCATAAAATCCAGCA # Right flank : TCGCCACTCTATTTTTTACCATCTGGTTGCAAAATTCCTCGTGTGCCTAGTAGAAACAGCAACGTCATTAGTGCCATAGCCAGTAGACCTGCTTGGCTAACACGGGCTCGAGATTGTTGGTAAAGCTTGGTGATAGTGGGTAAGTCTTGTTTGGTTGCTCCAGACTGCACTAACAGGTTGCTGAATCCTTGATCGCTGAGATAGGGAAACACGGTCATATTTTGTATGGTAATGCGGGTCTGAGGTGTACCGGCGCTGGATTTGTTTCCCTTTGAAACTTGGTCACGTTTACAGAACCGTTTTTGGCGTAGAGAACCGATTCAGCATATGGGGTATGGCGATCCTGCCGGTGATATACAGCTTCGAGAATTGATTGCCCACTATTTGCGAAGTGCACGCGGATTGGCGTGCGATCCTGCACAAATTCTAGTCACACTTGGGGCACAGCAAGCCATCATGGTGTCTGCGGCGATGTTGTTGAGGGCTGAAGATGAAGTTGT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 19484-19033 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAZG01000018.1 Hafnia alvei strain ATCC 29926 contig_18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 19483 28 100.0 33 ............................ AACAAATAGAGCCTCCCGTCGCGGTTCCTCCTC 19422 28 100.0 33 ............................ CTGACACCAGTAGCGAAGCCCAAGAAGACAGCA 19361 28 100.0 32 ............................ TTTACGTATGAAGTCCTCATAGAGATCACGAT 19301 28 100.0 33 ............................ GGCGCAACAAGGTTTAGCCTTAAAATATTTAAT 19240 28 100.0 32 ............................ GATACACTGGGGCACCGCTTGGTAATTCATAG 19180 28 100.0 32 ............................ AGCATTTGAGATTTAGCGAGAATGAGATTTGG 19120 28 100.0 32 ............................ ACTACACGCAACGGATCATATCAGGAGGAATC 19060 28 92.9 0 .....................C..C... | ========== ====== ====== ====== ============================ ================================= ================== 8 28 99.1 33 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGTGACTTTCACTGGCAAGGTGCGCAACCATAATCTTGGCGATAACGTCAGCGCATTGACCTTAGAGCACTATCCTGGGATGACGGAAAAAGCGTTAAATGAAATTGTGGCAGAAGCCCGCTCGCGCTGGCCTCTACAGCGTATTTCGCTGATCCACCGCATTGGCGCCATGTATCCCGGCGATGAAATTGTATTCGTTGGAGTGACCAGCGCACATCGCAGCATGGCCTTTGATGCCGCCGAGTTCATTATGGACTACCTCAAAACCCGCGCGCCATTCTGGAAACGAGAAGCCACCGAGCAGGGCGACCGCTGGGTCGACGCCCGCGACAGTGACCAACAAGCGGCAAAACGCTGGTAAGTTCTTTCAACCCTTTTTTCTGCCCTCACGATAACTCATTGATTTTTCACTCCTCCAATGAACCGTAAGAAAAAAGGGTTAAATTCCCCAAAATGAGCTACCGATCTGATTAATCGACGCTTTCTGCGAATATCCTACA # Right flank : CTCACCATGGTTTGTGTTTAATTTTATTGGCTATGTATCAACCTTAAGCCGTTAAGCTGGTTATATTCCAAAATTAAGAATTACTGCATCGTTAAGTGTGATTTAAGTTAAATTTCCCTAATGTGTTGGGTGGTATTTTTGCATTGTCTCCAACGATGGAATAACGATGTGAACAGCAATGATTTCTCTCCCTCTGATCTGAAAACTATTCTGCATTCAAAACGCTCAAATATTTATTACCTCCAATATTGCCGAGTATTAGTTAACGGCGGTCGAGTGGAATATGTGACGGATGAAGGGCGCGAATCACTGTATTGGAATATTCCCATCGCGAATACCACCGTGGTTATGTTGGGCACCGGAACCTCGGTCACTCAGGCCGTAATGCGAGAGTTTGCCCGTGCAGGCGTATTGGTCGGTTTTTGCGGCGGAGGGGGAACGCCCTTATTTGCGGCGAATGAGGTTGAGGTAGATGTCTCGTGGTTAGCTCCGCAAAGCGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //