Array 1 297-662 **** Predicted by CRISPRDetect 2.4 *** >NZ_BEZO01000157.1 Helicobacter cinaedi strain P02D0213 entry157, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 297 36 100.0 30 .................................... AAGATTTGCACAGAGTAAAGAGGCAAAGAG 363 36 100.0 30 .................................... TAAACTTCTCCCTATTGCGTGGTGTTTTTT 429 36 100.0 30 .................................... GGTAGATTCTGCGATGCACGAGCATATCAA 495 36 100.0 30 .................................... ATGTGATATTGATGTAAGCAATCGTGGATT 561 36 100.0 30 .................................... ACTTCACTTAGGTTGTTTGCAGCACCAGAG 627 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 100.0 30 GTTTTAGTGGGACCCGATTTGTGAGGGGATTGCAAC # Left flank : CCTCATATACGAATCCACCAAACCCAAAAACTCTCATTTATAATTTTTATTAGATATTATAAAAATGTGTAAAAGAATAAAGCCTAAAATAAGATTCTCTATAAAATACCAAGATGATTTACTCTATTTTAACACCTTTTACCTATCATTAAGGCATTAAAAGCCCTTGTGGCATTCCCTAGTTAGGCGTTTTTTGACATTTTGGTATGACTTGTTTGGATAGAGTTGCGTGTTTTAGGATATTTCAAGCTTTGAAAACGCTCAAAGCACACACTAGAGCCGACTTGGAAAAGTCAG # Right flank : ACAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTGGGACCCGATTTGTGAGGGGATTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-5.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 1 15219-17782 **** Predicted by CRISPRDetect 2.4 *** >NZ_BEZO01000163.1 Helicobacter cinaedi strain P02D0213 entry163, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================= ================== 15219 36 100.0 32 .................................... CTAAGCGATGGCTTGAAATCCACGCTTATTGG 15287 36 100.0 30 .................................... ATTCAAACATGCTTCTGATACAGGAGATTT 15353 36 100.0 31 .................................... AGATTTTTTCCTTGATTTTCTCGTTAGCTCC 15420 36 100.0 30 .................................... TGGAATTGTTTCTTGGAGGAAAACTGGCAC 15486 36 100.0 31 .................................... CTGAAAAAACGCTCAATGAGTGGCTAGAGAA 15553 36 100.0 30 .................................... TTCGCACTCCTCTATTTTAAAATCGTTTTT 15619 36 100.0 31 .................................... CAAAAACTCCTTTGGGTTAAAAAAAAAAAAA 15686 36 100.0 30 .................................... CAGCAGCGGCAGTATTCTATGCAACAGAAT 15752 36 100.0 30 .................................... ACCTATGATTTTGATGTCGATAGCGAGGAT 15818 36 100.0 30 .................................... ACCTATGATTTTGATGTCGATAGCGAGGAT 15884 36 100.0 31 .................................... TCTTTCACTTGCATATGATGAATGGAGACCA 15951 36 100.0 32 .................................... TTCACAAAAAGCATTTAATGAAACTATGCTAA 16019 36 100.0 31 .................................... AGATTCACGATACAATAAAAGCAAGTCATTG 16086 36 100.0 30 .................................... TTTTTTCTTGTTTTCGTCCATAATATGTCT 16152 36 100.0 30 .................................... ATTGTTTGCCTCTTTTAAAGAATGAAGTTA 16218 36 100.0 33 .................................... TTTTGCTTTTAGATCTTATGCAAACACTTTTAG 16287 36 100.0 31 .................................... TCATTTTTCCACCTCCCCATTTTTTTTAGCT 16354 36 100.0 30 .................................... GTTATTCCCTCTGTCCATATATAAGCGTTT 16420 36 100.0 30 .................................... TTTTTCGCCTGTTACTTCACTCTCTAAAAT 16486 36 100.0 30 .................................... TTCAAATATTTGGATATATGGGATACTGAA 16552 36 100.0 30 .................................... CTCGGCCTCGGCGTAATCCCCGATGTCGTA 16618 36 100.0 30 .................................... CCCATGCCCTGTGGCAAGTGTCTTGCTTGT 16684 36 100.0 33 .................................... TAGTTTTGCTTGCTTAAAGTCTTTTAGGCTTTT 16753 36 100.0 30 .................................... CAACTCTCAAGGGGCGTTTTATTCCCCGGT 16819 36 100.0 30 .................................... CAACTCTCAAGGGGCGTTTTATTCCCCGGT 16885 36 100.0 31 .................................... TTGACTGCCACGATTACCGCGATATGAGCTT 16952 36 100.0 31 .................................... ACTTAAACACATCGTCCCCGGTGAAAGCGGA 17019 36 100.0 30 .................................... GTTTGGATATATGGGGGCGAAGGACTCAAA 17085 36 100.0 30 .................................... ATTCTTGGAGTCTTTCGATCACAATTTTGA 17151 36 100.0 30 .................................... ATTATTGGATTTCTTTCAATTCGCCCAGAG 17217 36 100.0 30 .................................... AGGACAGCCGCATACAACGCCCCGAATACC 17283 36 100.0 30 .................................... GGCAGCAAATCAATTCTCCAAATCAGTGAA 17349 36 100.0 31 .................................... TCAGAATCAAGCTCGAGTCCCTCGATTACGA 17416 36 100.0 31 .................................... AAAAAAATCGTAGAAATCATAGAGAAAATCA 17483 36 100.0 30 .................................... CTCTGAACCCTTTTTCTGTGACTTCAATAT 17549 36 100.0 30 .................................... ACAGGTTTTTCCACATTGGAGGAATTTTTT 17615 36 100.0 30 .................................... AAGCTAAGTTACAATGTGATTGTGAAGTAT 17681 36 100.0 30 .................................... TGTTTGCTAAATTTACTAATCCTTTATTTA 17747 36 97.2 0 ...................................T | ========== ====== ====== ====== ==================================== ================================= ================== 39 36 99.9 31 ATTCTAGCATATAGAAGTTTAAGAAGGGACTAAAAC # Left flank : CTTTTTTATGATGCAATTTAGCGTGTATATGAAAATATGCAAAGGGTTAAGCTCGGCAAAAAGCTCTCTAAATGTTGTAAAAAAGGTGCTTCCACCTTATGGTAATGTCCGCGCACTTATCATCACAGAAAGACAATTCGACAATATAGAAATATTATTAGGAAACCCATCATTTAATGAGAATGTTAATGAAGATAAAAATCTTGTGCTATTTGACTTTGACGAAAATGCGGGTGATTACCGCTATGGTATGGAGTATCAAAAACAAGAAGAATTGAATACAACTACTACACAACCAAAACAAAAAATCAAAAATAGGCAACCAAGCCTATTTGAATTCTAGGGTTTTGATAGGGATATGATTTACCCTGCGGAAGACCCCTTACTCCCTTATTTTAGTCCCTTCTTAAACTTCTATGTCGCGAATTATAAAGGATTTCAGGTAATTTCCAGCTTAAAATCCTTTGAAATCCCTATCTATAGGCACCAACAGAGAGCCT # Right flank : TTAGTGAGATTGAAGCCAATTGGATACGAATAATGGCAGAGCTAGAGACACAAGATGGCGATAGTAACACTTCATAGAGTGTGGTTGAGTCAAAGCAGAATTTTAATGCCCTAAATGACTTTAAAAGTTATGCTGATGAAAATCAAAAGCAAACAACAAATGGCTTTTCATTTGGCTCTGCGTTTTCTAAATTGAAAGAAAAGGGCATTGAAGCAAAAGAAGCCATTGAAAAAAAGCAGAATGCTAGATAAGGTTAAAGAAAAAACAAGTGAGCTGACAAACAAAGGACTTGAAAAAGGCAAAGGATTGATTGAATCTCAAAAACAAAAAGGGGCTAACAATGAGCGAGATTAAGAATAAAACATTTGAAGATAAGTACAATTTGTTGGGCAATACACTGCTAAAAGTTAATGATATTTTATCTAGTGATTTTAGGAGAGAGCTAGAATCTTTGAGTCCTTCTTCTATGAGTATGGATAAAAAACTTTTATTGTTTTCGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCTAGCATATAGAAGTTTAAGAAGGGACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 22-389 **** Predicted by CRISPRDetect 2.4 *** >NZ_BEZO01000023.1 Helicobacter cinaedi strain P02D0213 entry023, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================== ================== 22 37 100.0 29 ..................................... AACACCTGTCCAGCGTGTGTATGTCCGCA 88 37 100.0 29 ..................................... AGATTCTTTTACCAAAAGATAAATTTGTT 154 37 97.3 30 G.................................... TTTGGAAGCGTTGGTAAGCAATAATAATCC 221 37 100.0 29 ..................................... TATTTTTGTGCGTGGATTATACTTTAATA 287 37 100.0 30 ..................................... TCAATTTAGAGCTTGGCGGAAGCCTATTTG 354 35 83.8 0 A...................--.A.........T.T. | T [383] ========== ====== ====== ====== ===================================== ============================== ================== 6 37 96.9 30 TGTTTTAGTGGGACCCGATTTGTGAGGGGATTGCAAC # Left flank : TCAAAATAATGCGTAAAGAATT # Right flank : CACTCTAATGCTTTTACTTGTTGTATCAAAGTTTGTCTATCTTATGTCATTACTAGGGCTTTGCCAAAGTATATAATCCACACAAACAAAAATCCTGTTATTTTTCTACAAAGTCTTGTAAGATTCTTAAATTTAGCTAGAATGCTGTGTTAAAAAATGACATATTTAAAAGGAAATAGATGAATAACTTCAGTAAGATTGGCTTTGTTTTGGCGACTTTGGGTAGCTCCATAGGCTTGGGACATATTTGGCGGTTTCCCTATATGGCGGGGGAAAATGGCGGTGGAGCGTTTGTTATCTTTTATCTTATCTTAGCCATTCTCATTGGTGCGTCTATGCTGATGGCGGAAATGCTCCTTGGCAATAAGGCCAGAAGCAATCCTTTGGATAATTTTACTATCCTTAATAATCTTAATAAACTTCCACCAAACACGCCCACACAAGAGCATAACACCACAGATTCTAAATCTAGCTCATCACTTATGTGGCTTGGCTTTTCT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTTTTAGTGGGACCCGATTTGTGAGGGGATTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 371-4 **** Predicted by CRISPRDetect 2.4 *** >NZ_BEZO01000182.1 Helicobacter cinaedi strain P02D0213 entry182, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 370 36 100.0 30 .................................... TGGGGAGGATATGGCAAAGGGGTATTTTGA 304 36 100.0 31 .................................... AGGCGTTGTGCCTAGAATTTAATCATTATAA 237 36 100.0 30 .................................... ATTACACACCCCAGCAATTCCGCCAACCGA 171 36 100.0 30 .................................... AAGAGATTCCAGAATTTGCGATAAAAATGT 105 36 100.0 30 .................................... CTCTGGTGCTGCAAACAACCTAAGTGAAGT 39 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 6 36 100.0 30 GTTGCAATCCCCTCACAAATCGGGTCCCACTAAAAC # Left flank : CCACTAAAACAGATTCTAACGGGGGGGGGCAATACATT # Right flank : CAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATCCCCTCACAAATCGGGTCCCACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [5.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 1 157-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_BEZO01000076.1 Helicobacter cinaedi strain P02D0213 entry076, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================== ================== 156 37 100.0 30 ..................................... ATTCTTTACGCATTATTTTGAATGTGCTTT 89 37 100.0 29 ..................................... TACACTCGCCACGCATATATGCAGGGGAC 23 23 62.2 0 .......................-------------- | ========== ====== ====== ====== ===================================== ============================== ================== 3 37 87.4 30 GTTGCAATCCCCTCACAAATCGGGTCCCACTAAAACA # Left flank : CAAATCGGGTCCCACTAAAACATGCGGACATACACACGCTGGACAGGTGT # Right flank : G # Questionable array : NO Score: 4.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.37, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATCCCCTCACAAATCGGGTCCCACTAAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA //