Array 1 755539-757156 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP054517.1 Flavobacterium columnare strain F9R56 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 755539 36 97.2 30 ......A............................. ATTTTAAAAAGACAGATTAAATCGGCTGGG T,TATAA [755540,755548] 755611 36 100.0 30 .................................... TGACTAAAAAAGCCATTGCAAGCGCTACAG 755677 36 100.0 29 .................................... CGATTTGGTTACACGAAGGTATTTTCGAG 755742 36 100.0 29 .................................... TTTTAAATTTGGCGGTTGACCATAGATCG 755807 36 100.0 29 .................................... ATTGTAAGGTATTTCAAGTGGACACCGCA 755872 36 100.0 30 .................................... ATTATATTTGTGTTACATGGTGTAGTTAAA 755938 36 100.0 30 .................................... TTCAGAAGGAATTTAGAAGCTTCTGTTCCT 756004 36 100.0 30 .................................... TATAAAGCAAAACTAATTGATTGATAAACT 756070 36 100.0 30 .................................... GAAAGCTATGCTGCCATATAAACAGGATGG 756136 36 100.0 30 .................................... TTTGAAATAATTTTTAATTTTATAACATTA 756202 36 100.0 30 .................................... TCTACAAATACCTGAATTAACTCTAAACTG 756268 36 100.0 30 .................................... AAAATAAGAAGAGATAGTAACAGAAACAAA 756334 36 100.0 30 .................................... GCATTTCAAGATAGTAGAGAATTTAATCAG 756400 36 100.0 30 .................................... AACTTGCAAACAATACCAGACTATCAAAAA 756466 36 100.0 29 .................................... CTTATTTTTCAAGTCCGTCGGGGTCGATG 756531 36 100.0 30 .................................... GATGCTGAAGAAAAACACAAAAAAGAACAA 756597 36 100.0 30 .................................... TTATAACCTTTTTACTATTTCATTTAGCTT 756663 36 100.0 30 .................................... AGAATTTCGGTTGGATACTCAAAGCAATTG 756729 36 100.0 29 .................................... GGTTATAAAATTGATGAAGAAATAGGCTA 756794 36 100.0 30 .................................... CGACCGCAAACATACGATAGTTACTTTATA 756860 36 100.0 29 .................................... GTTATTCAAGATAATTGCAACATAGGGTA 756925 36 100.0 29 .................................... TACTCATTCTCACTAAAAGAAATAGCTTA 756990 36 100.0 30 .................................... ATGTTCTATCGGCGTAAAATAAGTTAGCAG 757056 36 100.0 29 .................................... TTAATTAAATCACAAAAAATGACAAGAGA 757121 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 25 36 99.9 30 GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT # Left flank : AAATGCTTGCCGAATTTAAAAAACGATTAAATGTATAATTATGATTTAAGCGAACAAGCTAAAATAGATTTGTTGCGTATTTATGAATATGGAATTGGTCAGTTTGGTCTAGACCAAGCTGATAAATATTTTGACATGATGCACGATTGTTTTAATAAAATTGCTAAAAATCCATATTTATTCCCTTTGGAATCAAATATTAAGTCAAATTATTACAAATGTGTTTGCGGAATTGACACCATCTATTATAAAGTTGTTACAAATGGAGTTATCATTACAACAATAGTTGGAAGGCAGGATTTTGAAATTCAAAATTTAGTTCATTGACATACACTATCAAATCGCAAATAACCAAACCTCATACTGATTGGTTTGATTAAAGATTAGAAACCGAGGGACGAGGTTCAACGAAGTCAAAACACGATATTATTTGGTTAAAAATTACGATTGTAATTTCAGTTGTGGTTTACAAACACCAAGTCAATATTTGTTATAGGTGT # Right flank : TAGCTAACAGCTTAGTTCTTAAATATCAAAGCATTAAGCCGAAATATCGTTAAAAAAAATGCTTCTTTTTTGGCACGTTATACCAAGATTGAAGCATTTTTTTATTTCTAAAACAGTTCCAGTTGGGTGGGTTGTGGTGCTTTAGGGGTTTCTACTTTACCCCAAAAGTTTTGTATGTTCCCAAATTGCTTGTCTGTAATTCGTAACATACTTACTTTTCCTGAAGGAGGCAGGAGTTTGTGTACACGTTTTTCATGTACATCGGCACTTTCGCTACTGGCACAATGCCGTATATATACCGAGTATTGCATCATACTAAAACCATCTTTCAAAAGTTGGTTCCGAAATCCAGAAGCATTTTTTCGGTCTTTCTTAGTCTCAGTAGGCAAATCAAAAAACACAAACAACCACATAATTCGATACCCGTTTAAATCCATAATTTTGGGTATTTTATCTTTTTACGATCGCCCGAAAAACACTGTTGTAAGGAACTTGCCGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 1284413-1285497 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP054517.1 Flavobacterium columnare strain F9R56 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1284413 36 100.0 30 .................................... TATTCTAATGGATCAATTAAAAAAGCAAGA 1284479 36 100.0 30 .................................... TCGAGAGGTGTTAATGAAACGAACATAGTT 1284545 36 100.0 29 .................................... AATTACTGCTAAATGATACAATGTGTTTG 1284610 36 100.0 30 .................................... GGTAAATAATTTATCTCTAGATTATAGTAT 1284676 36 100.0 30 .................................... GCTATGCTACTTATACAGATGCACAACATC 1284742 36 100.0 30 .................................... TGGTTTTCCGTAATGATATAAATAGAATTT 1284808 36 100.0 29 .................................... CGGTTTGTCTGCATTTGAAACTCCAGCAC 1284873 36 100.0 29 .................................... TCGCGGGAAAAGTTGAAAAAGGATTAAAC 1284938 36 100.0 29 .................................... GTTTTAACCAAACATTTGCCAGGGCATAA 1285003 36 100.0 30 .................................... AGTGCGGAAAGCCCGGCTTTAGAACGCCCA 1285069 36 100.0 30 .................................... GGAGACATCCATCCTCTATCTAAACGTAAA 1285135 36 100.0 30 .................................... AATGAAGAAGTTTATTTAGAAAACCAAAGA 1285201 36 100.0 29 .................................... CAATCTCAAAGTATAATTGATAAATAGGC 1285266 36 100.0 29 .................................... TTCTAGCTTTGGCCACCTCATCTTTTGAA 1285331 36 100.0 29 .................................... TTGTCGAACTTTTCTTTTTTATAATGCAA 1285396 36 100.0 30 .................................... CATATTCTTCTTCAAAGTGATGTTTGTAAT 1285462 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 17 36 100.0 30 GTTGGGAAAGCCCTTATTTTGAAGGGTATCTACAAC # Left flank : GAGTACGCAAATACATCCAGCCGATTTTGAAAGAGAGGGCAATCCAAATTTTAAAAAATATTTAGCCCATTCTATTTTAGAAAACGAAGATGATCTTGATAAACTGCCTGAAAAAGCAGAAGCAATGAGGGAACTGGATGAAACAATTACTAATCCAATCATTAAAAAAGCGATTGTGTTAATTATCATTCGCAACAAAATGGCGCACAATCAATATCCACCTAAATTTATTTACGATTTAGCGAATCGTTTTGTCCCAAAAAAAGAAGAAGAATACTTTGCGACCTATTTCAACCGAGTTTTTGAAACCATAACAAAAGAATTATGGGAAAACAAAGAGAAAAAAGATAAAACACAGGTCTAAATACAATTGCTCTTTGACATTTTAAATTAGGATTAAAAAAATGACTACATTTGCAGTGATTAAAACAAAAAAAGTTCATTTTTTATAAAGAAAAATTGTAGTAATCCCTTACTATGAGAGGCTTACCAGCGTTTAG # Right flank : CACCCTTAGAATCTTCACCGTACCAATACCTGTTAGCCCTTATTTTGAAGGAGGGACGAGCGTTAAAAAATAGTCCAATGGACTATTTTAGCGAAGTAGCCAGGAGGTGCGTGGGCGTTTAAAACCGAATTCAATTTTTTTGAAGGAGGGACGAGCGTTAAGGAAGCTGTCCAAAAAGTACTAATTCAACATCCAGTTTGTCACTCCTACGTAAGGAGGAGTCTCATAATCAATAGTATGTAATTTCTTCCTTTGGTCAAAATCACAAGATTGCGAACTTTTTGGACAGTCTCTAGCAAAATAGCGAGCAGGCGTTTGAAACCAAATTCAATTATTTAAAAAATAGATAAACCATAATTCTTATTCATAGAAATACCTCTTTTTTTAAAATAACAAAAACAAACCTATAACACAATCAAGTAAATATGATCTGTATACTACCTCCTAAACTTCCTTATAATTTAACCTCAACACCTAAGATATTTTTGTAAATTTGAATC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGGAAAGCCCTTATTTTGAAGGGTATCTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA //