Array 1 1975683-1974514 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012716.1 Fusobacterium nucleatum subsp. nucleatum ChDC F316 strain KCOM 1322 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================================================================================= ================== 1975682 30 76.7 109 ..AA....G...A.T...A..........G AAATAAAAAATTGTAAGAAATTAAAGTTTTTTATTTTTTAGTAAAAAAACTTACATTGACAAAAAGATATAAAAAAAGTATTATGTAGGAGTAGTTTTTTTAGCTAGCT AC [1975659] 1975541 30 100.0 35 .............................. TAAAAAAAATTCAAAATGATGTATATAAATTAAAA 1975476 30 100.0 36 .............................. AGCAAATGATGAAAAAGTTATATAATCCAGATTTGA 1975410 30 100.0 36 .............................. CAAGGTTACACATTTAGCCGTGATTGTGCTTGTGTT 1975344 30 100.0 37 .............................. GAGCAAAGGAACTTGTTAATCAAATTAAAATTTGATT 1975277 30 100.0 36 .............................. TAAAGTAAATTTACAATCTTCATCTATACATTTATA 1975211 30 100.0 37 .............................. GATGATTACATAACTCTTTCAACTTCTGAAATCTTTA 1975144 30 100.0 37 .............................. CAAGGCATAAAAGAAGAATTAAACAAGCATTTAACTT 1975077 30 100.0 35 .............................. TTCAAAAATTAAGTATTTTAGGTAGCTTGTTCCAA 1975012 30 100.0 37 .............................. TACATCATTTTTATATGAACCTTTTCTATATTTTTCT 1974945 30 100.0 36 .............................. GGTGTTAATAACAAAAATACTCAAAATAATGTAGCA 1974879 30 100.0 38 .............................. TATCTCTTTTCACTAATAATTGCTCTTTTATATTTTGA 1974811 30 100.0 38 .............................. GTGAGTGTGAATAATTGGACTTATGAAAGATTTATAAA 1974743 30 100.0 37 .............................. CAAGGCATAAAAGAAGAATTAAACAAGCATTTAACTT 1974676 30 100.0 36 .............................. AAAGATGACTTTATAGATTTATTAAAATCTGAAAGA 1974610 30 100.0 37 .............................. AAAGCAGCAAAGATAACAACAGAATCTCGTCCTGTTT 1974543 30 96.7 0 .............................A | ========== ====== ====== ====== ============================== ============================================================================================================= ================== 17 30 98.4 41 ATTTATGTATTTCTATATTAGAATTTAAAT # Left flank : AACTTATTGTCCAAGAATTTGAAGATAGATTAAAACAAATAATAACTCATAAGGACTTAAATAGAAAAATATCTTATCAATATTTAGTGAGGCTAGAATGTTATAAACTTATTAAACATTTATTAGGTGAAAAGAAATATAAATCTTTTCAAATGTGGTGGTGATAAAATGTATGTAGTTGTAGTGTATGATATTTCATTGGATGAAAAAGGTAGTCGGAATTGGAGAAAAATTTTTGGAATTTGTAAAAGATATCTTCACCATATTCAAAATTCTGTCTTTGAAGGAGAATTATCAGAAGTTGATATTCAAAGATTAAAATATGAAGTTTCAAAATATATTAGAGATGATTTAGATTCTTTTATAATTTTTAAATCAAGAAATGAAAGATGGATGGAAAAAGAAATGCTAGGTTTACAAGAAGATAAAACTGATAATTTCTTATAAAATTTATTGTCTACCTCTGATAATGTAAAATTACTGAAAGATTGACAAAAGTT # Right flank : TGTACTGACCCCAAAAAGTCGGACAAATTTAATTTAACTTACTAATAAGGATTGACTTCTGTAAGAAGCAGGAGTTAATCCTTTTAATTTTTCTGTTACTTTTTCTTCCTCTATAAATCCTATGCTTATCTGAGTTCCCTCTATATCACTTTCTTTTTTTCTATTCCATATTTTTTCAAGTCAATTTTTGCAATGCAACTATTTTCAAAATTTTTAAATTTTGTATATCCTATTGAATTTCCTGTAAGACAATTATAGGTTTTCTAAATCTGAAATATCTTTCTTTAATTCATCAGGAATTTTAGATGCATCTGTTACTCTATAGATTGCTTTATATTTTTTCTTTTTTAAATTACAATTTCTACAAGCAATAATTAAAACATTTCCAATGTAATTTCCTTTTTCCTCAGGAGTAGTTCTTAGTATAGAAGATGGAGCATAATTACTTGTATTTTCCTCTTTTTTTATTATTCTAAAAATGATTGATTTTTTGTTTCTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTATGTATTTCTATATTAGAATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:90.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.10,-1.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //