Array 1 34-260 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAZY01000033.1 Thermoanaerobacter thermocopriae JCM 7501, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 34 30 100.0 36 .............................. GCACTTCATTTTCACGTATAACAAACTTCCGCCCAG 100 30 100.0 35 .............................. ACATTTTAAGTCTCCTCCTTTTATTTTTTATTTCC 165 30 100.0 36 .............................. ACAAGGTTCCTTACCCTTAACTCTTGTCCTACCCCG 231 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 4 30 100.0 36 GTTTTTAGCCTACCTATAAGGAATTGAAAC # Left flank : TCTCTGCTTCTAGCTCTCGAAGTTCTTTTGTTTG # Right flank : CAGCTCCTCGCGGGTATACTGGGATTTCATGCCCAGAGCGTTTTTAGCCTACCTAGGAATTGAAACTTGGAATGCTATTTACAGCAACTTAGCAAAACATGAGTTTTTAGCCTACCTATCCTGAAAATAGTGTCTCTCAAAAAGGCAACAAAAAACTAAACCATACCGATGTAAAAATATGGGATAAATGAATGGTTAATAAAGTAAAATAAAAAGTTAAGACGCTGCAGATTCGACCGTGACCTTAAGACCTAAAGACTCTAGCTTTTTTAAAGATTGACGAATAATCATATTACGCTTTTTTTCTTCATAATAAGTAGGACCTAATTCAATATAAGGTTGCTTTCGCTTGAGAATATGATAAACTATAATTAAAATGCTATGTTCCACTGCAACTGCTGCACGGTTTGCTCCTCTTCGAGCAGCGATGCGGTGGTACTGACTTGAGAGATAAGTTTCTTTTGCCTTTGAGGCAGCTAAGAACACAAATGGGCAGCAGA # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 1727-40 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAZY01000039.1 Thermoanaerobacter thermocopriae JCM 7501, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1726 30 100.0 37 .............................. CAAATTGAAATGCCTCCAGACCTGCATAACTACTATA 1659 30 100.0 35 .............................. ATTATTTCCTCTAATTCTGCTTCTGCAATTTCTTC 1594 30 100.0 35 .............................. CAGCAAAACTCAGCAACAATCTATATGGCTTCACA 1529 30 100.0 36 .............................. TGTTACGGCAGGGAAGCAGAGCGGAGATTGTCACTC 1463 30 100.0 37 .............................. GTCCCCCACCTGTCGGTATTTTGATTCTGTCAAACGA 1396 30 100.0 36 .............................. AACCTTTCACGACTGCCTGTTTCACCATGTCGATTG 1330 30 100.0 36 .............................. ACGAATCTCTAAGCTGAAATTTTACTTCAGAAACAG 1264 30 100.0 38 .............................. ATGTTTTGGTTGATTTCTTCTATTTCAAGGTAAATAAG 1196 30 100.0 34 .............................. GCACAAAAAATACAAGCAGCTGCAACAATATTTG 1132 30 100.0 37 .............................. ATTGGAAAATCGGTCAAATATGCTTTTCCGGTGTATT 1065 30 100.0 36 .............................. TGGCACTTTTGACAGTATTTCTCGTACAGTTTCACT 999 30 100.0 36 .............................. CACTGCTGTTGTCTTGGTTAATGCCCCTGTACCCTG 933 30 100.0 39 .............................. TACAAAGAATCCTACTACTGTATTTACAAAACCTTGCAC 864 30 100.0 36 .............................. CTGATGTGCCTTTGGCGATTCGGCAAGCCATATTGA 798 30 100.0 35 .............................. TTCTGCTAGCGAAGCGGCAGAAGGTATGCAAATTC 733 30 100.0 35 .............................. ACACGACCCATAAGGTAATCAATACTCACGTCGAA 668 30 100.0 36 .............................. CTTCCTGCGTAATGTTCTTGTACTTCCTTCTTAAGT 602 30 100.0 35 .............................. TGACATAGAGGGCTTTTTATCTTTCATGTACGAGA 537 30 100.0 36 .............................. ACTTTGGAGTAATCCGTACCAGTTTTAGCTAACTGC 471 30 100.0 38 .............................. ACTGCCTTTTGTAGAAAGCACTGTCATATCTGTTGCGG 403 30 96.7 35 T............................. ACTGCCCTTTGACTCTCAAGCCTTTGCCATCTTCG 338 30 100.0 39 .............................. TTTCCCGTTTTAGTTCAGGTGATAGCTTCCTTATATTTG 269 30 100.0 36 .............................. CTGCCCCCCTGCTCTCTCCTACCCTTGCAGTTGCTG 203 30 100.0 37 .............................. TGTTAAAGACGCCAAAAGTTGGAGTGCGAAGGAACTG 136 30 100.0 37 .............................. TTCTCTGAATCATCGGAGTAACTATAGGCAACAGTTT 69 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 26 30 99.9 36 GTTTTTAGCCTACCTATAAGGAATTGAAAC # Left flank : TGCCATAAGTAAGTTTTCTTTAATAGAAAACAATCCGGGGTATTTTGAAGCCTTCTTTATATATGACGATGTAGCAGAGGACATTTTTGCAAAATATTTAAAACTTTCAAATGTTAAGAATTTTAATGCTAGAAGAGAGGCGTATTTAGAAATTCAGAAAAATATAAGGGATTATATACTTTCTATTCCCAAAAAATATATTAACAATTTTCAACTAGACAAGGGTATTCCTTACTTACCTAAAGAAGGTATACAAGACATATATGATTTTAACACAGGATTTAAAAGAGATATAAATGATAAATGTATGATATTATAAATAAATGTCGTCGATGTCCAATAGTGCAAAAAATGCCTGGGGATCGACGACATTTTTATTTTTCTGATTTTCATAAAATAATTGATTTTATTGCACAATATGGTATAATAAAGTCAAGATACTTGACAGAAATTAAAAAATTGTAAGGTGTATAATGTGCTATTTATGCATGTTAGAATGA # Right flank : CTGCGACTGCACCTCCTCAATAAATTTTTCTCATACGTTT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 8662-11828 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAZY01000046.1 Thermoanaerobacter thermocopriae JCM 7501, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================== ================== 8662 28 100.0 38 ............................ GTAGAAAGAATATTAGTAGTCGCATAAGCACTTTGATA 8728 28 100.0 37 ............................ GCGCTGATTTTTGAACTTAATAATGTACCTGTAAGCC 8793 28 100.0 37 ............................ GAAAATGGGAAGGAAATATAGGAGTAGCCATCCTCTA 8858 28 100.0 37 ............................ GTGCTCCCGGAAATGTCTCCTCTAGTCCAATCATTTG 8923 28 100.0 37 ............................ GTATACAACACCAAAATTAGTTGATTTTGCGTAATTT 8988 28 100.0 37 ............................ GCCTAAAGCCAAATCCAGCAAAATAGAGCCAGAAGAG 9053 28 100.0 37 ............................ GACAAGTTGGAGTTATACTATAAAATTGCATGGTACT 9118 28 100.0 37 ............................ GGTAGCTATTGCGGGCATGGGCTTATTATTTACGTTT 9183 28 100.0 37 ............................ GTAGTAGTAAGCCTCCTTTATTCCTGAATTTTAAATC 9248 28 100.0 40 ............................ GGATAAGGTAAATCTTTCTCTCCTTAATGAACAAATAATG 9316 28 100.0 38 ............................ GTCTACATAGCGTACAATCCTTTTTCTTTTTCCTGTTG 9382 28 100.0 37 ............................ GGCCTTTCCCCGTAGTTCATAGTATTTACGATTTAAA 9447 28 100.0 37 ............................ GCGCTCCCGGTGGTACGCATAAAGCAACGTTTTTCGG 9512 28 100.0 37 ............................ GACATTTGGAACAGAATAGTTAGCACTATAAAGTCCA 9577 28 100.0 40 ............................ GTTGTACAGTCATACCAAGTCTGTCAATTATCCTATACCC 9645 28 100.0 37 ............................ GGAAAACATGATAAAGATGTACAAAGCGATGAAAGAA 9710 28 100.0 37 ............................ GGTTGGTTCTGGAAAGTCTTATCATGCGTTAAGGGAG 9775 28 100.0 36 ............................ GCAAAAAATAAGGTCGACCTTTTTGGTTGATTACAA 9839 28 100.0 37 ............................ GGAAATAGCCCAAGAAACGGGCTATTTCACAAGAGAA 9904 28 100.0 39 ............................ GTTGTGCAATCATGTCTTGGAATAAAGAAAAGACGCTGA 9971 28 100.0 37 ............................ GGCTTTTTATATATGCGGAAGGAGGATATAGATGGAC 10036 28 100.0 37 ............................ GGCACATTTGTGACCCACGGGTGATTAGCGATAAGGG 10101 28 100.0 37 ............................ GGTCGGCGCACAAGTGACAGTGCAAAGTGCCGAAGCT 10166 28 100.0 38 ............................ GACCGCGGATGATTTCAACAGGATTGAAGGGAATATCG 10232 28 100.0 37 ............................ GAAGCATCTGCCACCCTCACCTGCACCGCTCCGTAAC 10297 28 100.0 36 ............................ GTCAGAAAGCACATCTCCTTAAGGGGATTGGGAGGA 10361 28 100.0 36 ............................ TGATATGAGACGGAGGTTGAAGATATAAAAAACTAA 10425 28 100.0 36 ............................ TTCAGTAAACTCTTACAACTCTTTTACCTTTCCGAC 10489 28 100.0 37 ............................ TATAGGGTCTGTAGGCGACAAACACGCCTACATTTCC 10554 28 100.0 38 ............................ TTTACAACGGGCGAGCTGTGGATGCTTGCGGGTATCAG 10620 28 100.0 37 ............................ TGTATTACTTGAAGCGAAAACTTTGCGAAAAAGAGCA 10685 28 100.0 37 ............................ TAGCCATGCACGAATACGTCTGTTTTGTTTGAGTAGC 10750 28 100.0 37 ............................ TACACTATTAAAGCCCGGGGCGGAAAAAATTCTCATG 10815 28 100.0 37 ............................ TACATTATATCATAAAAGAGTGTATCATTGTGTATCA 10880 28 100.0 38 ............................ TTCTATATCTTCTAAATCTTCTACATCTTGTGTGAAAA 10946 28 100.0 37 ............................ TAGCTGTATCAGGAGCTACAGCAGAACAGATGGAGAA 11011 28 100.0 40 ............................ TGATATTTTGTACAAAGCTGGCTTACGTGAAGTTGGAGAG 11079 28 100.0 39 ............................ TAATTTGAAAAACGGAAAGTAATTCGGGTCACTTATTAC 11146 28 100.0 38 ............................ TGCTTTTGCAAATATGTCTGTGTTGCGTATGTCTGTAC 11212 28 100.0 37 ............................ TAAATATAATTGGGAAGAACTGAAAAAGGAATTTATG 11277 28 100.0 37 ............................ TGTTGTATTGACTTCAAATGTTGCACCTGTGACATTT 11342 28 100.0 37 ............................ TGAGATAAAGACAAAACAACAAGCTCTCTCCACCACA 11407 28 100.0 40 ............................ TTTTGCTGGTGAAAATGCTACATATGAAGATAACAACAAA 11475 28 100.0 36 ............................ TTAGTTTTGCTGTTGAGGATTCATAGTCTCATTATA 11539 28 100.0 38 ............................ TGGTAAAGAAAAATGCGCGTATTTCTGTATAATAAGCG 11605 28 100.0 37 ............................ TGTGTTTATTAAAAAGTGATGCGTAAATTCTGCTATA 11670 28 100.0 37 ............................ TGTGAAGCTATAGCAAAAGCTTTTGAACTTGCTTTTG 11735 28 100.0 38 ............................ TTTAGCTGTTGCAATCTTTGGTGCTTTGCTTGCTGTAA 11801 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ======================================== ================== 49 28 100.0 37 GTTTTATCTGAACTATGAGGGATGTAAA # Left flank : ATGAATTTTTGCCTAAAGGAGTGATTGAGAATATTTGTAATAGTCACATACGACATCAACGAAAAGAGAGTAAACAAAGTAAGAAAGATTTTAAAAAAATACTTTACATGGGTGCAAAACTCTGTATTCGAAGGTGAAATCACATTTGGGAAGCTTGAGAAATGCAAACGAGAACTGCTTTCAGTAATAAAAAGAGATGAGGATTCAGTATATTTTTATGAAATGGAGTTTAAAATTGTCTGCAACAAAAAGATATTAGGGCAAGAAAAAAATTATGACTCCATAATATTGTAATTATGACAATATAATCAATTTGCAGCGAACTTCGCCATAGGGTATACAACAGCAAGGCCTTGACATAACTAAAAAAAGAAGCTATTTAACAAAAAATGCTAAATCCAGACCACCCCTTCGCTGCAAATCATCCTTGTTGCAAATAATTTTGAATTTAGTATAATTGTAGATGATATCTGAATTTAATAGTTCTGTTATTAAAGTGG # Right flank : TTTAAATTGATAACGTATATAAGTTGTGTCTGTTACTGTAAAAGTCAATATATTTTGTACAAAAGTGGAATATAATTTTGTACAAAAATGTACTAAGATGCATTCGAAGAACTGTTAAAATATTCAACTTTTGACTTTAATCTATATGAAGGCCCTTTTATTGATATAACATGCGAATGATGAAGTAATCTATCCAATATTGCATTGGCTAATGTTGCTGATCCAAATACTTCTGCCCAATTAGAAAAGGGCATATTAGTTGTAATAATAGTACTATGCTTTTCATACCTTTTAGATATTAGCTGAAAAAATATATTTGAAGCATCTGTGTCTATTGGTAAATATCCTACTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTGAACTATGAGGGATGTAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [78.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 3552-4 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAZY01000061.1 Thermoanaerobacter thermocopriae JCM 7501, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 3551 30 100.0 36 .............................. ACTCTACTGTGTCCTCTAATATCGCTTCTCTCTTTA 3485 30 100.0 37 .............................. CTAAAACGCTTTGGGATGTGATAATATGGCGGAAATA 3418 29 96.7 38 ........-..................... TATCGGGTGATGATGTTATGAACGCGGGACAGTTGAGA 3351 30 100.0 37 .............................. TGCTTTGTGTATCCTGTGCAATGGCTTTTTCCTTATT 3284 30 100.0 36 .............................. AAAAAACAAATGGAAGCAGCAAGAATGATTGCCGAA 3218 30 100.0 37 .............................. TGCCGTACCAGTCATCAAGAGGATTAAACAGTTTCAA 3151 30 100.0 37 .............................. TCGCAAGTATCGTAGGACCCCATTTGCTGAAAAAGCC 3084 30 100.0 37 .............................. GCTTTTCTACATCATCAAGGCCAGCGAATATAATCTG 3017 30 100.0 38 .............................. TCAGCACCATATGGGTTTGTTTTTATTTTCATTCTTCT 2949 30 100.0 38 .............................. GCATCAATATGGCTTGCCGAATCGCCAAAGGCACATCA 2881 30 100.0 37 .............................. ATTATATCATTATCCCATTTTCTAAACGTGTCTATAT 2814 30 100.0 36 .............................. GAAGTATTTTAAGAAAAATAGAGGAGGAGGTGAAAT 2748 30 100.0 38 .............................. AAATTCGACATACCTAAAAGATTGTGGAGGAGCATTTA 2680 30 100.0 36 .............................. TCAGCCTGACTTGGGAAAGCACTCTTTACCTCGCAG 2614 30 100.0 37 .............................. ATGGTTGGCTGTGGAGGAGAGAAAAAAGAGACTGCTC 2547 30 100.0 34 .............................. GAAAGTCGCAGCGGGCGGCACTGGAAGCGAGAAG 2483 30 100.0 36 .............................. AAGGCAATCAGCAGGCCTTTGGAGGCATCCTTGGTA 2417 30 100.0 37 .............................. AATCAATTGCAAGCTCTATGTCTGTTTCCTGGGCAAC 2350 29 96.7 36 ........-..................... TCTGGGAGGTGACGACCGGTGCCGCTTAATACCAAA 2285 30 100.0 35 .............................. TGTAATCGCAATTCTAAAAGGCGAAGCAATAGCAA 2220 30 100.0 36 .............................. TTATTTCACCTTTATATTTCTTAATACTCCGGCTGC 2154 30 100.0 35 .............................. TCTTGTGGTACTAAACATTTTGCTGGTTTTACAAG 2089 30 100.0 41 .............................. TACTCGCCTCCCATTCTCTGTAAAGTTTAAACCAATCTTCC 2018 30 100.0 38 .............................. AGGAGTGTATGATATGGCAGTGCTGATAAACGGAATAC 1950 30 100.0 38 .............................. ATTTCTTCGTCATCCAAACCCCTAACACGGAAGGAAAA 1882 30 100.0 36 .............................. GGTACTGTGTTGTAAAGCAAAGGTTGAGTAGAGCAC 1816 30 100.0 37 .............................. AGGTCTATGCGATAAACATTTAGAGTGGCCATAGTAG 1749 30 100.0 37 .............................. ATCGTGAAGTCAACCGGATATTCGCCTCTTGCGCTAT 1682 30 100.0 36 .............................. CTATAAAGTCGTCTATATCAGGTATATCTTGAACCA 1616 30 100.0 34 .............................. ATTTCGGACAAGGTGGATACTACATCAGCAGAGT 1552 30 100.0 35 .............................. AGTCTTGGAATACTTGAGTAGAATTTTTCAAGACT 1487 30 100.0 36 .............................. CTTAAAACACCTCCATGATTTTGTTTTAGACGTATA 1421 30 100.0 36 .............................. TTTTTCTGCTATTTCTCTTTGTGTCAAATGTCCTTC 1355 30 100.0 37 .............................. TATTTACACACTCATAAGGACTTGGAAATCCTGTATA 1288 30 100.0 36 .............................. CCTGTTCTGGCCTATAGCTATCCATTTAAATCCCTC 1222 30 100.0 36 .............................. AGTGCTTTTTTATGAATCCTATGTATTTGTCTCCAG 1156 30 100.0 36 .............................. TTTTTAGCACTGTGTTATCAAGCGTATATGGGTCCG 1090 30 100.0 36 .............................. CATCCCTACTACCCGTTCTGCTTACCGACACAAGCG 1024 30 100.0 38 .............................. CTCGTTTTCCTTCTTTTGAAAACACCAGCACGTTTTCA 956 30 100.0 36 .............................. CAGAGACTAGTGAACTCTATGTCCTTGACTAGCACG 890 30 100.0 36 .............................. CTGAGAATAGCCGCCGACAGCGAAGCCGACCCCATG 824 30 100.0 36 .............................. ACCTCTTCCGGTAAGACCGCGTAGAGCGTATCACAC 758 30 100.0 36 .............................. TGCAAGACAGAGTTTACATGGCGGTGTTGATACTGA 692 30 100.0 35 .............................. AATATTTTGAGAGCAACAGACAAAAAGGAGCACTT 627 30 100.0 35 .............................. CTGCTGGCGTTGCGGGGGACATTCTACCGCCTCAG 562 30 100.0 37 .............................. CCACAGCAGAAACCCTGTCCTGCACCGCTATAATTGG 495 30 100.0 37 .............................. ATATGAACATTTTTATCCCTCCTCTTTAAAAGAAATT 428 30 100.0 35 .............................. AAAGAAAGGTAAAAACAAATACTTGCTTGTTGTCA 363 30 100.0 36 .............................. GCGAAGATTACGCAAACTACAGCTTTGAAGTAACAT 297 30 100.0 37 .............................. ACATGACTAGTTTTGTCGTCGATAAAGATGTTTAACT 230 30 100.0 35 .............................. ACGTAATCCAAACCTATCTTGTAAAAACAGAAAAA 165 30 100.0 37 .............................. GGCTATTGAGACATACAAAGGGGCAATGGGCCGGGCA 98 30 100.0 35 .............................. CGATATACTTCTTGCGATACATCTGGTCTCAATGG 33 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================= ================== 54 30 99.9 36 GTTTTTAGCCTACCTATAAGGAATTGAAAC # Left flank : TCTATCC # Right flank : CAAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [5.0-8.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,9.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 7-3691 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAZY01000008.1 Thermoanaerobacter thermocopriae JCM 7501, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 7 30 96.7 36 T............................. TTTCCGCTGCCATTCTTATTCCTCCTTATATCCAAG 73 30 100.0 36 .............................. CAGCTATTCATAGAGGATGTGCCTGAGGAAATAGAG 139 30 100.0 35 .............................. GTGTTAGCTGCTGGTCGTTGCGTATATTCCCTTTC 204 30 100.0 35 .............................. AATAATTCGCTATATTGTTCTTTGTATTCATCTAA 269 30 100.0 35 .............................. TATTTTTTTAAATTTTCTAAAGTAGGATTAATCAA 334 30 100.0 38 .............................. CTGGGATATGGATTGAAGAAGCCAGCGAGCTAGAACAA 402 30 100.0 36 .............................. TGGCTTAGACTTTGGTTACAACGACCCATCGGCATT 468 30 100.0 37 .............................. AGGGCTCTGATGGCGTAATCCGTGAAGGCTATAAAGC 535 30 100.0 35 .............................. CCTTATCGCCCTTACGTAAAAAAGGAAGGTCTGGA 600 30 100.0 38 .............................. TTTGCACGAGGATCGGCAAATATCTGATGGAACACTTC 668 30 100.0 39 .............................. TATCGGCAAGGGTGTCGCCTCTAAATACCTGCTTTGCAA 737 30 100.0 36 .............................. TCACCGCCTTTTAGGCGATTCGCAGCACTTGCCCAG 803 30 100.0 36 .............................. ATATGTGAGAGCATAGTAAATGAGACAATTTACTTT 869 30 100.0 37 .............................. ATAAAAATTTCTTTGATTTTCCACCCCTTAACATCAG 936 30 100.0 36 .............................. CGTGCAGTGTATGCACTATATGGCTGTTACTGGAGC 1002 30 100.0 38 .............................. GTATTTGAAGCGAGAGGATAAAAGAAGGAATTTTACTC 1070 30 100.0 38 .............................. TAAGCTTCACCCATTGCTCTGTTTGCTTCAGTTATTTG 1138 30 100.0 38 .............................. AATATAACCACACCGTTCTTCTCTATAAACCATCCTTC 1206 30 100.0 38 .............................. TAATTGAGTCAGAAGCGAGGGAAAAAGAAAATTAAGAG 1274 30 100.0 38 .............................. AAGTGAACGATAGGGATAAATCCCCATGGATTCCTTTC 1342 30 100.0 35 .............................. AGCAAATTTTCTGCTTTCCATGACAACTCACACAA 1407 30 100.0 37 .............................. CGGTCTAAAGCAATTGGAACGCAAGTTGGCAAGTATA 1474 30 100.0 37 .............................. GCGTAATTCCGTGGCGTCCATTGCGGTTGTCCTAATG 1541 30 100.0 36 .............................. CGCACTCTTAAAACAAGGTGCATTAAAAGGCTTGTC 1607 30 100.0 36 .............................. TTTTCACCTTCTGTAAATGGAATTTGCACAACTGAA 1673 30 100.0 35 .............................. ATGACCATGCAATGGCGGCTCTGCGATATGGAACA 1738 30 100.0 36 .............................. AAGCTGTAAAGGCAACATTACAGTTGTCGGCAGCTG 1804 30 100.0 37 .............................. TTGGTTGCCTTAAAAATGCTTGTGCAAGCACATCTTT 1871 30 100.0 35 .............................. AGAACTTAGAAAAATTCTAAAGGAGGTATCTTAAA 1936 30 100.0 36 .............................. TAGATTCTTACACGCTGTTTTAGAAACTGCTTACAA 2002 30 100.0 36 .............................. AAAATGTATGAAAATGATGAGCTTGAAAGGATGACA 2068 30 100.0 35 .............................. TAATATTCTGTGTAATGAAAAATACCGCGGTGTTT 2133 30 100.0 38 .............................. TACATCATTCATCACCTAAATGTGCGGTATTAAGCCTT 2201 30 100.0 35 .............................. CATTGATTGCAGAAGCAAAGAAATTTCAAAAAGAA 2266 30 100.0 37 .............................. TCGCCACAGACGGTAAAACTTATGGGTGGGTAATGCG 2333 30 100.0 38 .............................. AGCTTATAATAGCCGTCATAGTCTAAAACGAGAAGTGC 2401 30 100.0 34 .............................. CCTTACATTGCGGCGCTGAGGCTGCTACGGATTC 2465 30 100.0 34 .............................. TCCTATGTTCTTTTGTACAGTAGTTTTATTCGTC 2529 30 100.0 37 .............................. ATATTAAAAAACGCAATGCATTAGCAAGAACGATGCG 2596 30 100.0 36 .............................. ACAGAGAAAAGGCACAAAAGTTAGAGCAGATAACAA 2662 30 100.0 36 .............................. CATAAATATTTATACAGGAGATTGCGGAAGAGTGTA 2728 30 100.0 38 .............................. GACAGATTAAATGAGGAACTTGATAAATATCCTTTATT 2796 30 100.0 36 .............................. ATGGACCTTCAAATAAAAGTTTCAGAGCTAAACCTT 2862 30 100.0 37 .............................. AAGAAGGACTAAACTTCAAATTAAATGAAATAGTAGC 2929 30 100.0 38 .............................. TCTCCTTTTTAATTCTGTTATATTGCATAAAACATAAC 2997 30 100.0 35 .............................. CTATAGTTATAAGCCTTCCTGCTTTTGTCGTTTGT 3062 30 100.0 37 .............................. AAAGTATATTTGCATTTTAGCATATCCACAATTATAA 3129 30 100.0 37 .............................. CCTCCTTCCCCATAAGCCATTTTTCTAATGCTTGCAC 3196 30 100.0 38 .............................. TCCGTACCCGGAATAACTCCGTAGTCTTTCTTTTCTTT 3264 30 100.0 36 .............................. CGTTGACATAAAACAAGAGGTACTTGATAATGGCAA 3330 30 100.0 36 .............................. ACTGCTAATTTGCCATTAACAGAGCTATCTACTATA 3396 30 100.0 36 .............................. TATATTTCTTTACCACAATATTTACATTTGCCTAGG 3462 30 100.0 37 .............................. TGCCATGTCCCACGAGTTATCTTACCTTCGCTATCTT 3529 30 100.0 36 .............................. CGGCATTTACCTTGGTCCCTCCCCAACTGCTGTTAC 3595 30 100.0 37 .............................. TGTAAAAACAGGTATTATCGAGGATGGAAAGGAGGAA 3662 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 56 30 99.9 36 GTTTTTAGCCTACCTATAAGGAATTGAAAC # Left flank : TGATGGT # Right flank : CATTGTAGTAATTTTTTCAATTTCTACTACCACATTAGTTTTTAGCCTACCTATCCTGAAAATAATGATCCTCAAAAAGGCAATAAAAAACTAAGCCCATACCGATGTAAAAATATGGGATAAATATGAAACTAAATGGATATAGCTATATAAATAAAATATAAAAAGTTAAGACGCTGCAGATTCGACCGTGACCTTAAGACCTAAAGATTCTAGCTTTTTTACAGATTGACGAATAATCATATTACGCTTTTTCTCTTCATAATAAGTAGGACCTAATTCAATATAAGGTTGCTTTCGCTTGAGAATATGATAAACTATAATTAAAATGCTATGTGCCACTGCAACTGCTGCTCGGTTTGCTCCTCTTCGAGCAGCGATGCGGTGGTACTGACTTGAGAGATAAGTATCTTTTGCTCTTGAGGCAGCCCTGGCAGCTTCAATAAGAGAGCTTCGCAATTTTTGGTTACCTTTTCGAGTTTTGGCAGACTTTTGTTTAC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [5.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.68 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //