Array 1 265709-267506 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIAJ01000019.1 Escherichia coli strain 3-1BK entry19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 265709 29 100.0 32 ............................. CCTCCCCGCTCACGCCAACGTTAAACGTTATC 265770 29 100.0 32 ............................. ATCCCCCGGTTATTGACCCCAAAACTGGTGAG 265831 29 100.0 32 ............................. ACTCAGTCAGCGCGTTAACCCCTTCACACGAC 265892 29 100.0 32 ............................. GAACGGCGGCTATACGGATTCGACAGGTCAGC 265953 29 100.0 32 ............................. TAACCCGGATAACTGGCAGAGTGCGAATAAAC 266014 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 266075 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 266136 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 266197 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 266258 29 100.0 32 ............................. CCGCCGATTTCCCTGGCGTCAAAAGCGGTGAG 266319 29 100.0 32 ............................. CTCTTTCTCAGTCATCTGGCGCTCAACGCCGG 266380 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 266441 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 266502 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 266563 29 100.0 32 ............................. GCAAATTAAGCTGGCTGGCAATCTCTTTCGGG 266624 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 266685 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 266746 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 266807 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 266868 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 266929 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 266990 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 267051 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 267112 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 267173 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 267234 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 267295 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 267356 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 267417 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 267478 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 30 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 283008-284195 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIAJ01000019.1 Escherichia coli strain 3-1BK entry19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 283008 29 100.0 32 ............................. CTCCGACTTACCGTAGTGATGGCGCGCTGCCA 283069 29 100.0 32 ............................. AATTTCTGGAAAAAAACAAATTCAAAAAATTG 283130 29 100.0 32 ............................. TGACTGCGGTTCAAAATCTCCGGCACACGTCC 283191 29 100.0 32 ............................. GAAGTCATGAAGACTTCGACTATTTCTTGATA 283252 29 100.0 32 ............................. GAGAAAAATGCTACAAAAATGAGCTACGAAAC 283313 29 100.0 32 ............................. CCATAATCAAAAGCGGCCAGAACTGCCATTTC 283374 29 100.0 32 ............................. ACAAAACGCGATCAATACAGTTTTGTTTTGCA 283435 29 100.0 32 ............................. ATACCCCAGCGTTTCGTTATATGACGGAAGAT 283496 29 100.0 32 ............................. GGATTTGCATTAACGCGGCGTGAACATTATTT 283557 29 100.0 32 ............................. CTGCAATCACCAGCGGCGCGGCGTGGTTTGGT 283618 29 100.0 32 ............................. CGTCACCACGCGCGCTACAGGTAATGCAGCTC 283679 29 100.0 32 ............................. GGGATGAAATTGAACTTCCAGGCGACCGACAA 283740 29 100.0 32 ............................. ATTGATAACTCGCGCTCATCCATTTTGAATTA 283801 29 100.0 32 ............................. GTCTGTGATGGTCTGCTCGTGAGTCCGCGGCG 283862 29 100.0 32 ............................. TAAACACAAGAAAAGGGCGGCACGGAGCCGCC 283923 29 100.0 32 ............................. GATTTTTCGCGAACTATCCCGGCGTAATGCGG 283984 29 100.0 32 ............................. AAAATTCCATTTTATTACTGTCGGCAATTTCG 284045 29 100.0 32 ............................. GCATATTTCATGCAGCGTTCTGAATGAGTAAG 284106 29 100.0 32 ............................. GCGTGGCGCGGGGCGTATTCCCCGGCGAGTAA 284167 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 20 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //