Array 1 4935-4317 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABPRH010000019.1 Haloferax sp. KTX1 isolate KTX11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 4934 30 100.0 37 .............................. GCGCCTCGGTCGGCGTGAGGACGTTCGTCGTCTTGCC 4867 30 100.0 35 .............................. CTCAACTCCGCCGCGCCCGCTATCATGGCAACGTC 4802 30 100.0 36 .............................. GTCCTATCGCCGATGTCGATGGTCTGTCCGTCAATC 4736 30 100.0 35 .............................. CTTCGGGAGAAAGCGGAGGCCGGCGGTGCCGAGTG 4671 30 100.0 33 .............................. CAGTGTTAACCTCACACGAGTCGACCGCGACAA 4608 30 100.0 37 .............................. TGTTGTTATCGGCGGTGTCTCGGTGCTCTCCCCGCAC 4541 30 100.0 35 .............................. GCCGTTCGTGAGCGCGCCGAACGTGAGCGTGGCGG 4476 30 100.0 35 .............................. GCGTGCTGCTTGCTTATCGAAGTACCAGAACGCCA 4411 30 100.0 35 .............................. ATCTTGATGACGAGATATGCGTCTTCAGTGGCGAG 4346 30 86.7 0 ...............G......C..A..A. | ========== ====== ====== ====== ============================== ===================================== ================== 10 30 98.7 35 GTTTCAGACGAACCCTTGTGGGATTGAAGC # Left flank : TCCCGCTCGTCGGCGACTCGCTCACCGACTTCCGCGGCGTCGTCTACGCGCCCTCCATCATCGACAACTTCGAGGCGCTCCGCGCCGGCGAGCGCTCGTTCGAGGAAATCGCCGCGCCGACGATGACGCTCGCCGCCGACACGAACGTCAGCGACGCGTTCGACCAGTTCCAAGCCGAAGACCAGGAACTCGCGCTCGTCCTGCGAGACGGCGAGGTCGTCGGCCTCCTCACCGCAACCGACGCCCTCGAAGCGGTCATGGGCGAACTCGACGACCCGCTGGACTAGCGCCATCGACTCCGCCTTCGGTTTTTTCAGCGTTCGGTCGAGGCTCACTGACGAGACGGACGCATGACGCATCTCTCCGGAAGTGGCTCTCAACCGCCGGTGCTGAACCGTCGTTCCGTCGACCCCCCGGGGGGCTCGGGGGAATTGGGGGTCGACGGAAACGTTGATGTGAGTTCGCCATGTACAGCCGCCTACCCCCGTGAATTCGGGCTG # Right flank : GAGTGTGCAATCAGGAGACGACGTCGTGACTCCCGTATCAGTCGGCCACGTACTGAAATCGAAGAATGCCCGGGGTGGGCTCCGAACCCACGATCTCCGCATGTCCCAGGTGCGAGGCCGGCATGACCTCGCGGGGGGCGGAGGCTTCCAAGGCGTTCCGCACCGATTGTGAAACCCTATGAGTGCGGCGCTATGTCCAGCTAAGCCACCCGGGCTCAACTTCCCGTTGTGTGCTGGTTGTATTTAAGCTTCTCATCTTCGATGGCCGCGGGGCGAGTCACCACGCCACTCGATTCGAGTCATCACCCGCGGATTTATGTCCCAACACCGGATGCACACACGCATGAGCCAACCGGAGATCGTCCAGTCCGTCCTCGGAGAGGAAGACGTGGTGACCCGCGTCCACCTCGGGGGCGAGGACGAACTGTTTGTAACTCCGACGCGGACGCTCGTCTATCGGGCCGAGGGCCTCCTTTCGGACGAGTCCGTCGACGAATTCT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGATTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.20,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 3943-2303 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABPRH010000001.1 Haloferax sp. KTX1 isolate KTX11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 3942 37 100.0 33 ..................................... CCACCCGCCGAAGCCGCCGCGACACACAGCCGG 3872 37 100.0 35 ..................................... GGAGCCGCTCCTGATACCACGCGTCAGCCTCGTGG 3800 37 100.0 36 ..................................... CAGAGGTCGACGCGAGCGTCACGAACGCGACGACGA 3727 37 100.0 35 ..................................... CTGTCACAAGCACTCCCGTCCCGAGGCGAGTCATC 3655 37 100.0 37 ..................................... TCGGAGTGTCGTGACGCGGCGTTTTGGCTCTTGGAGC 3581 37 100.0 35 ..................................... AAACACGATACTGTGGCGCAATGCCTGAAGAAGTC 3509 37 100.0 37 ..................................... ATTTAGATGGACATCGGCGGCAACCAGAACGAGCAGG 3435 37 100.0 35 ..................................... CGCTTGACGTCGACGACCTCGCTGAAGTCGCGAAC 3363 37 100.0 36 ..................................... AAAGAGACCTTGCCGTGTCCCACGGCCTTCTGCCCG 3290 37 100.0 38 ..................................... TCAACGTAATGGCAACACGTTCTGCGTCCGATGGCAAC 3215 37 100.0 33 ..................................... TGTCGAAGACACCTACGGTGTTACCGTCGATGC 3145 37 100.0 37 ..................................... AATGTGTTCGATGTGGACTACCAATAACGGTCCAAGT 3071 37 100.0 38 ..................................... GGAGCCGAAGAGCGCAAAGCCCGCTGGTTCCTCATCGG 2996 37 100.0 37 ..................................... GCCGAGCAAGGCCGTCGTCACGCAGAGCGCGCCGAAC 2922 37 100.0 36 ..................................... TGAGAGATGGGCGAGGATGTCTGTGGGTCTGAAACG 2849 37 100.0 36 ..................................... TGGGTCCGCTTGGTTTCGATGTCGCCATCGGGCGTT 2776 37 100.0 37 ..................................... TCAGAACTCATAGGTAAGAGACTCCAGTGTCGCCGTT 2702 37 100.0 36 ..................................... TCGACGAAACGGGAGAGGTCCATGAGTTGCTACCTC 2629 37 100.0 37 ..................................... TCCTCGAACGTGGTACAAATCGCCCCCGACCCCGCAG 2555 37 100.0 34 ..................................... ATGTACGCTCCGAGCTCGCGCCGGTCACCGTTGT 2484 37 97.3 34 ....................................A TCGTCACTCATTGGGAGAACACCCGAACCGTTCC 2413 37 94.6 37 ..T.....................A............ ACTGCCGGTGAGCGAGCGCGTCACGGTTCGGACCGGC 2339 37 86.5 0 ..T...................C.T.A........C. | ========== ====== ====== ====== ===================================== ====================================== ================== 23 37 99.1 36 GTCGCAGTAGGGAGAAAACCTAGACCGGGATTGAAAC # Left flank : CCGTGCAGCAGAGGGTGAGTTAGTCGTCAATCTGAGTGGCGGTGCACGTGACGTGTTTCTTCCGTTTTCAACGGCTGTACTGTCGGAGTTTGGTCGAGTAAGTCGGACACTCTGTTTTAGCGACATTGATGGGCGTGTGCGTGAACTGAACCTCCCCAATCTGTCTGTGGAACTGTCGGACTCCGTTGCGAAGACACTCATCGCTATCGAACAGCTCGGTGGAGAGACTTCCATCCCTGAACTTACTGAGACCAGTGACCAAGCCAAGAGCACGGTTACTCGGCACGTTGCCGAGTTAGAATCGTATGGTGCTGTTGTGTCCGAAAAAGAGGGGAAAGTCAAGCACGTCTCGATGACGCTGACGGGGCAGTTGTTGGCCGGTCGGCGTTGATTTCATGGACCATTATTAATACGCTGTACAGCCCCAGTCCATGATCTGACATCGGCTTCTGGACTCGTCACAAAGCATTATAGGCTCTGAGCCGTGATTTTCACCCCCT # Right flank : GCGAAGTCGTCACCGAACGCGGTGCGGTTGTGTCGCAACCGCCCCGAGTATCGACGCCGTCACCGACCGAATCCGGTTGAGCCGTTCGAGGACCGACTCTGCCTCCTCGTCCGCCCATGCAGCGAGATAGAACGCCGAATTGCTGACGTCCAGCCCGAACTGGCGACCGACGAGATACGCGACCGCTTCGGCTTCGACTTCGCGCAGCGACCGCTCTGGCAGGCTCGTCCGGTCTGCGTGCAGCAGTCCATGGGCGAACTCGTGGACGAGCGTCGTCGCCATGTCCGCCTCATTCGGCCGCTGTCTGACTTCGATGTTCGGCCGCTGTCCACGAGTGAACGTACACACGCCGCGCGCAGCGCCGTGGGACCACTCACTCGGAGAAACGAGCGACACGTCCACGCCGAGCGAGTCCGCTGCAGCACAGAGCACGGAAACGAGGTCGACTGCATCACCGTACGTCTCCGTGGGTAGCGATGGAAGCGGCTCGCCAGTCGTCT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAGTAGGGAGAAAACCTAGACCGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,13] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.90,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : NA // Array 2 14212-16439 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABPRH010000001.1 Haloferax sp. KTX1 isolate KTX11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 14212 37 100.0 36 ..................................... ACTTCCGCGGTTATGACCTGGACGAGTACTTCGAGG 14285 37 100.0 37 ..................................... ATTCGGTACAGCCCCTTCACGACGCGCTCGACGAGGC 14359 37 100.0 37 ..................................... ACTCCGTTTAGAGTCCGGTCGCTCCCCGACCCGTGCG 14433 37 100.0 35 ..................................... AGCGCTTGCTGGCGGTTTCGGTTGACGTCCGGCGT 14505 37 100.0 36 ..................................... CTCATCTGGCTTGAGTCGGAGTGGGACACCGCCAAC 14578 37 100.0 36 ..................................... AGCGTGTTCGGGTTCGAGACCGTAAGGGCGTCCTCG 14651 37 100.0 36 ..................................... AAAGACGAACTCTTTGTGCTCATTGAGGCGGTCCTT 14724 37 100.0 36 ..................................... GTCGACCGGCGGACGCGGTCATGCACGTGCAAGGAC 14797 37 100.0 36 ..................................... GCCAGGTCCCAGCTGGCCAGACCATGGGCGTCGAGC 14870 37 100.0 36 ..................................... TTTATATTAACTTGAGATACGCAAGTGGCGGTTCGT 14943 37 100.0 36 ..................................... GTCGCGGTCGAGGGCCGCGCTCGCTTGTTCAGTGTC 15016 37 100.0 37 ..................................... GTTTCGAGCCGCTTGGTCGAGTCAAGCGATTCAATAT 15090 37 100.0 37 ..................................... ACGGTACTCGTCGGGTCCGACAGTTGCGAGAGCACGT 15164 37 100.0 37 ..................................... ACGGTACTCGTCGGGTCCGACAGTTGCGAGAGCACGT 15238 37 100.0 36 ..................................... AACTGTAAATCGTCAGGGGTGGTAGCCTCCGTGACT 15311 37 100.0 37 ..................................... CTGGCTGATCAGCCCGCGCATGTCCTGGCGGAGCGCT 15385 37 100.0 38 ..................................... TCGTCAGTCATAGGTAGCTCACTCCAGATGAGTCGCCC 15460 37 100.0 36 ..................................... CCGTGATTCCGGGACCAAATTAGTGGGGACAGGAGT 15533 37 100.0 36 ..................................... AGGTCCGACCACGTGCCTCCGGTTTTCTCTTGCCAT 15606 37 100.0 36 ..................................... GCAAGAATCCCAACTGAGTCTGTTAAACTCAACCAC 15679 37 100.0 38 ..................................... ACGGCATCGACCGACGCCGTCCGCGGGCCAACGTCGTT 15754 37 100.0 37 ..................................... TCATCTCAGGTCCTCGTTGAGTTTGTCGACAAGCGCC 15828 37 100.0 33 ..................................... ATGGGACGGTCCCAGACGATTCCCGACTAAAGC 15898 37 100.0 36 ..................................... ACGACGACGTAGCGCCGAAGTTCGACGCATCGTAAT 15971 37 100.0 35 ..................................... TTGTCGAGGACGTCGCGTCGACGAGATACGGCGGC 16043 37 100.0 33 ..................................... TCCGCGGTCCGCTGGCCGGGATAGGTAACGACG 16113 37 100.0 36 ..................................... ATTTCGAGCGCGCCCGCATCGGTTTCGAGGACGAGT 16186 37 100.0 35 ..................................... CGGTGCTGGGAGCATCGAATCGACCTGCCCAAGCA 16258 37 100.0 35 ..................................... TTATCCTCGTGACGCAACTGGAGGCACCTCGCCTC 16330 37 100.0 36 ..................................... TCGTGACAAACGAGATAAACAATGGCGGAGCCGACA 16403 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 31 37 100.0 36 GTTGCAGTAGGGAGAAAACCTAGACCGGGATTGAAAC # Left flank : ATTTCGACTATCGAGTCACACGACGAGAGGCAATCCGGCAACAAACGATTCTGCTTCGGAAAGCAATGACGGATGAGTTAGACGACTACCACGCACTGGAGTTCGATCACTAATGCACCTCGCAGTCACGTACGACATTAGTGATGATAGCCGTCGTCGACAAGTATATCAGACACTCGAACGGTACGGTGCGTGGCGGCAGTATAGTGTGTTCGAGCTCAAGATCACGAAAGCACAGCGTGTCGAGCTAGAATCCGAATTAAAAGGCACGATTACGCCAGCAAAGAGTGACCGAATTCGGATTTATCGACTCTGTACTGCGTGTCAAGACGATATTACTGACCTCGGTGACGATCCACCTGATGAACAGTCAAACGTGATCTGAGTCAGTTTTCATCGACCCTTATTAAATAACTGTACAGCCCCAGTCGATGAACGATGCCGGTGATTTCATTGGCAGAGAAAGCACTATATTGTCTCAGGGCTGAATTTCACCCCCT # Right flank : CACGCCCACATCCGACCGCGACCAGCGACCACTCACCGAGGTCTGCCGAACGGTGACGGACAACGTCGGAATCCGCTTAGAGTACGAAGGAGCGTTCGACTGGGTTGCGTTCGTCCCGAAGCGTGACTCCGTGGAGGGTACCCTCACCAAATACTTCGGCAAGTACACCGAGCCAACAGCGGCTGGGTCGGCGTACAAATACCGAGGCATCGAGTGTCGCCAACAGAGCACCCCGCCCTTCGTTGGGAGCGTCCAGAAAGAACTCATTCAGACGTTCGACCAGTACCGCAAGCCTGGGCCGGTCATCGACAACCTGGCCGGTCATATCGATGCGTTGCACGCGGGTCGTGTCGACCCCTCGGACCTCGTGATCACCACGCGAACGTCGAAGCCGCTTACCGAGTACGACCAGGCGACCCAGACGGTTGCGGCGCTGCAGCGAGCGGACGGACTGTATGACGACGACCAGCCTGCAGGAAGCACGGTCGAGTACGTCGTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGTAGGGAGAAAACCTAGACCGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [51.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : NA // Array 1 13-346 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABPRH010000380.1 Haloferax sp. KTX1 isolate KTX11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 13 29 96.6 32 ............................A GTGGCACTAAGCCGCTGATTTGAGGGATTTGT 74 29 100.0 32 ............................. TTACACTGTAGAAGAGATGTCATGGGATGACG 135 29 100.0 32 ............................. GTTGCCGAGGCTTTGAGCGTAATTCTTTCTAT 196 29 100.0 32 ............................. GAAAAGGCTGAGATTCGCCGGGAAATCATTGA 257 29 100.0 32 ............................. CGGATAACCCGCCCTTCCTGGTCAAAATGGAA 318 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 99.4 32 CCGTTCCCCGCATGCGCGGGGATCAACCG # Left flank : GTGTGGGCCTGCC # Right flank : TCGCGATTGCAGGTCGCGGACTTCGCGCTTGACC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTTCCCCGCATGCGCGGGGATCAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CCGTTCCCCGCAGGCGCGGGGATCAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [5.0-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.68 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //